Lhum009570.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:607288-613012[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.15 9.1 6.3 3.1 1 23 399 421 399 421 0.97 2 19 0.018 1.1 9.1 0.8 2 23 458 479 457 479 0.96 3 19 0.0018 0.11 12.3 1.6 1 23 550 572 550 572 0.98 4 19 0.00099 0.062 13.1 1.1 2 23 576 597 575 597 0.96 5 19 4.6e-05 0.0029 17.3 1.1 2 23 645 667 644 667 0.96 6 19 0.00022 0.014 15.2 1.5 1 23 671 694 671 694 0.94 7 19 0.00053 0.033 14.0 0.8 1 20 700 719 700 724 0.94 8 19 4e-05 0.0025 17.5 0.7 2 23 798 819 797 819 0.95 9 19 0.00016 0.01 15.6 5.0 1 23 872 894 872 894 0.97 10 19 0.00015 0.0093 15.7 1.0 1 20 899 918 899 920 0.95 11 19 0.038 2.4 8.1 0.3 2 23 931 952 931 952 0.97 12 19 2.3e-05 0.0015 18.2 0.6 2 23 991 1012 990 1012 0.97 13 19 5.2e-05 0.0033 17.1 2.0 1 23 1017 1039 1017 1039 0.95 14 19 9.5e-05 0.0059 16.3 2.8 1 23 1045 1067 1045 1067 0.98 15 19 3.7e-06 0.00023 20.7 0.4 1 23 1083 1105 1083 1105 0.95 16 19 3e-07 1.9e-05 24.2 0.6 1 23 1111 1133 1111 1133 0.99 17 19 2.9e-05 0.0018 17.9 0.6 1 23 1139 1161 1139 1161 0.97 18 19 0.019 1.2 9.0 6.9 1 23 1167 1189 1167 1189 0.96 19 19 0.0042 0.26 11.2 0.6 1 20 1195 1214 1195 1216 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAATACGTCGGATCCGCCACAGAGCGAGGACGCGACCGCATCCGGGATATGCCGCGTATGTTTACTGGACAATCTAATAATGCGCGACCTCTTCTTCGAGAGCGATGTCGCGTCTCTGTCGACGAAGGCGATGAGCTTCGCCAACGTTAAGatgttACCAGGTGATGGTCTACCAACACAGGTATGCTGTGTATGTGCTGATAAGCTAGAGTCAGCATATGAATTCAAGTTACAAGTGGAACAGGCTGACATTGTTTTGAAAGAGAGACTTGTTGGAGGAATAATTAAAGAGGAATTGTTTCTCAATGAAGTGGAGATAGATTTGGATGATGAACGGAATGACATTGAGGAAGAAACAGTTGACAGTGATAATTATGAATCTACTGCTGATGTTTTGACAGAAGAGTCAAATACCGacaagaattttttgaaagacaAGTTAATTTCATCAGATGAAAAATTGACAAAGACAAAAAGAATGCAACAAAatccAGAACAAAGTAATTCACAAGAAATTAGTCAAAGCATTGCGGAAGAATTGCAGCAAGAATTATCTAAGACAGAGGACAGTGGCATGTCAAGTACGATTAACGAATCTAGGGATCAAGAACTTTTCATGGAGAAAAATACTCCAAGTTGTCCAGACATGATTCCAACAGAGgaacacaattatattatgcagCAACAATGTATATTGTCCGCTGAACAATTACCTTTGCAGGAAAAAACGCAAGAGAACGTGCCACAAATTGAAAGTGAAGAAAATCAAACTGAGGAAAACCAGGACATTCAAGTTGAGCTAGATCAAAAGTATGAAATTGAGCAAACTCAAGACGATGGAATTGAGGAAAGTGAAGAAATTCAGGCTGAACAAGTGGAACAGCTGGAAAATCGAGTTGAGGAAATTGAAGAGAACAAAGTTGAGCTAGTTCAAGAGAATGAAGTTGAGCAAAATCAAAATGATGAGAAATCTCCCTTGGAAGAAACGGCCAACGCTGACGTAAACGAGCCAGCGATGGAACAAGATTCATCTCAGAACGAAACTAGAAGGAGTAAACGCAGATCAACTCGCCGGACATTCGCCGAACGGGATTCCGACGAGGCGAGCTATTTTGAAAACCTGAATCTCAGTTCCCGTATGAAGAAAGTACAGGCGGACAAGACTGAGAAGATCTTCTTTATGTGTTACTTGTGCGACAAACAGTTCCTGTCGAAGAGCATTCTGAAGGAGCATATGCACTCTCACGAGGAAGTGAGAAAAACACTGTCCCTGCAGAAAACACCAGAGAAGCCGCAAAAGGTACAGATCAGCGTCTCCGTCGCGAAGACGCCGTCATCTGGAAAGAAAGTCAACAAGTGCCCTTATTGCGGTAAGGAGTATCTGTACATAAACTCGTTTAGTAAACACATTAAGCAACACGAATTGGAGCAAGAGGAGACGAAAGAGGAGCCGATGCCTCTCGAAGTATCATTCCAAGAGGATGAGTGCAGTCTGGATTTCGATAACGACAATAACTCGGATGCGGAATGCAGGAGGCGAATAAAGAGGGGAAGTGCGCCCGATGAAAACGAGGACAACGCGAGCGACGACGAACAGGATAAGAGAAGGAAGCGGAGTCGCATCGAGGAGTTTGTGTGCGACAAATGTCCCGAGAAATTCTATTTGAAGCAAGAATTTCAAAAGCACTCGCTCACGCATATTAATCTTCAGTGCAGCGTGTGTAAAGAGGAGTACAACACTCTGGAACAACTGAAGAATCACCGAACGAAGCACGTAGTCGAAGGAGTGCTCACCGAGCAGGATTTAGAGGAGGATATGAAGCAGATGGTGAAGAACGTCGATAATAACGAGGAGAACAAAGGCGACAATGAGGAAGAGAACAACGGAGAATCCAACGAGAACACCAGCGAATTGAAGTGTCCGAAGTGTTCGATGACGTTTGCGCGCAAAAAGTTTCTGTCCAGGCACCTGGAGACGGCACATTCCGGCAGCTACGACTGCAAGATATGCCGTCAGCAGTTTCAGCGGAAGGATCTCTTACGCAAACATATCGAGCAGCAACACGCGCGGATGAAGACCTACAAGTGTACCCAGTGCAACAAGATCTTCGGCAACGAATTCACTCTGAGGAATCACCTGGTCGCCACAAATCACAAAACGTTTGTACACGGGAAGGAGTACGATCCGAACAAGCGCATAAAGCGCGTGGCCGCGAGAGCGGCGCAGAAGATCATCTCGGATAAGATCAAGACTGAGCTGCTCGGTCTGGAGAATTACGACGACGATGATACCGATTACGACGCGAAAATAGACGGATCGGGTTACCGTCGCAAGCGCGACGTTACAccaaagtataattataagaaagaTTTGGAATGCGCGACATGCAACAAGAGGTACAGCTCGAAGCAGGCGTTGACGAAGCACATGGAGCTGCACGTGAAAAACGAGAAAGCGGAGAAAGCAGCGGAGGCGGACAAGTCGAAAAAGGCCACTCCGGAAAAGAAAGATGCGCAGAAGACGAGCGGCGTGGgtgacaacgacgacgacgacgactcgGACTTCGAGAGCGGCCTCGACTGGCCGATGGATAGCCACGAATGCACCACGTGTAAAAAGCGTTACAGCACAAAGAAGTCGCTGCTGCGGCACCAGCTGCTGCACGAGGAGCCCAACTTCCAGTGCGACATCTGCAACGTTAAGTTCTACCGCAAGGACAAGCTGAAGGCGCACTACGACAAGTGCTCGGAGAAGAATCCCGATCAGGTGCGAAAGTGCAACATCTGCGGCGACAGTTTCGAGAATAACGAGATTCTGCGGGAGCACAGGGCCAAGCACGTTACCGAGGGCATCCTCACCGAGGAGGATTTGAAGGACATCGAGCCGAAGCCGGAAGAGAAAAACGCGGACAAGAAGATCGGCCGTAAGAGGAGGACCGACATCATCGGCCTCGAGTGTACCGAGTGCAACAAGCAGTACACTTCCAGGAAGGGTCTTCTGCGGCATATTCAGGTGCACGAGGGCAAGAAGTATTTGTGCGACATGTGCCCGAAGAAGTTCTACCGGCGAGAGCATTTGAAGATCCATGTAGCCAAGCACAACATGCCAAAGGCGTACAAGTGCACCCGCTGCACCAAACGCTTTGTGAAGGAGGAACAGCTGAACAATCATCTATCGAAGCACGACCGCACGTTCAAGAAGAACAAGGAGACTGACAGTTCGAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTTACGCAATCGACGACGCTGATAGCGCACTTACGCGCCCACAACGGCATCAAGCCGTACGTATGCGAAGTGTGCTCCAGACCGTTCACCACGAATGCTTATTTGAAGATGCACATGCGTACGCATACTCAAGAACGACCGTACATCTGCCATTACTGCTCGCGAGCGTTTGCCCGGGCCGACACTCTAGCGAACCACGTAACATCGCATACTGGTGAAGCCAAGTACCACTGCAAGTGTTGCCCGAAGAACTTCCGGCGACTCAAATCGCTGAAGGAGCACATGTTCATCCACACGGGCCAGCGACCCTACGAATGCCCGACCTGTGACCGGAAGTTCAACAACAACGGCAGCCGCTACGCGCACAGCAAACGCTGCAAGCAGAATCTCCTACAGAATCAGAATCGCGCGCAACAGacgcagcagcaacaacaacagcagcagcagcagcagcagcagcagcaacagcaacagcagcagcagcagcagcaacagcaacagcaacagcaactTCAACAGCAGACGGTGCTAACGGTCCAGCAACCTCAAGAGTTGCAGCATCCAATGCAGATACAGGTACAGCCGCAAACAGTCACGTTGCCGCCAAACATCAAGACAATTGCTATCGCGAGACCGATCGAGTCAATGGTGGCAACGCAACAAGTGATAGTCCCGCAGCCGCAGGAGATATTGATGCCGCTGATTTTACCGCTCACTGTCACCCTCACCGACGTCGGCGAGGAGGTGATACTACCCGAGGGTACGAAGATATACACAACTTCCTAA
- Protein Sequence
- MDAVEINTSDPPQSEDATASGICRVCLLDNLIMRDLFFESDVASLSTKAMSFANVKMLPGDGLPTQVCCVCADKLESAYEFKLQVEQADIVLKERLVGGIIKEELFLNEVEIDLDDERNDIEEETVDSDNYESTADVLTEESNTDKNFLKDKLISSDEKLTKTKRMQQNPEQSNSQEISQSIAEELQQELSKTEDSGMSSTINESRDQELFMEKNTPSCPDMIPTEEHNYIMQQQCILSAEQLPLQEKTQENVPQIESEENQTEENQDIQVELDQKYEIEQTQDDGIEESEEIQAEQVEQLENRVEEIEENKVELVQENEVEQNQNDEKSPLEETANADVNEPAMEQDSSQNETRRSKRRSTRRTFAERDSDEASYFENLNLSSRMKKVQADKTEKIFFMCYLCDKQFLSKSILKEHMHSHEEVRKTLSLQKTPEKPQKVQISVSVAKTPSSGKKVNKCPYCGKEYLYINSFSKHIKQHELEQEETKEEPMPLEVSFQEDECSLDFDNDNNSDAECRRRIKRGSAPDENEDNASDDEQDKRRKRSRIEEFVCDKCPEKFYLKQEFQKHSLTHINLQCSVCKEEYNTLEQLKNHRTKHVVEGVLTEQDLEEDMKQMVKNVDNNEENKGDNEEENNGESNENTSELKCPKCSMTFARKKFLSRHLETAHSGSYDCKICRQQFQRKDLLRKHIEQQHARMKTYKCTQCNKIFGNEFTLRNHLVATNHKTFVHGKEYDPNKRIKRVAARAAQKIISDKIKTELLGLENYDDDDTDYDAKIDGSGYRRKRDVTPKYNYKKDLECATCNKRYSSKQALTKHMELHVKNEKAEKAAEADKSKKATPEKKDAQKTSGVGDNDDDDDSDFESGLDWPMDSHECTTCKKRYSTKKSLLRHQLLHEEPNFQCDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLKDIEPKPEEKNADKKIGRKRRTDIIGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDMCPKKFYRREHLKIHVAKHNMPKAYKCTRCTKRFVKEEQLNNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICHYCSRAFARADTLANHVTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQQTVLTVQQPQELQHPMQIQVQPQTVTLPPNIKTIAIARPIESMVATQQVIVPQPQEILMPLILPLTVTLTDVGEEVILPEGTKIYTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -