Lhum001781.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:217-2174[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.5 5.5e+02 -0.0 1.0 35 44 47 56 15 56 0.77 2 9 0.00053 0.083 12.2 0.2 2 40 69 107 68 110 0.74 3 9 1.8e-05 0.0029 16.9 0.4 3 39 125 162 123 167 0.87 4 9 1.2 1.9e+02 1.5 2.1 17 26 205 214 195 229 0.80 5 9 0.23 36 3.8 0.0 3 23 246 266 244 276 0.92 6 9 0.0061 0.96 8.8 0.6 13 44 301 332 288 332 0.83 7 9 0.008 1.2 8.5 0.0 6 43 358 392 355 393 0.80 8 9 0.036 5.6 6.4 0.1 4 26 413 438 411 442 0.75 9 9 0.17 27 4.2 0.2 13 44 465 496 454 496 0.82
Sequence Information
- Coding Sequence
- ATGTGTTGGGAAAAACGAGTTCACCCCATGATAGCGGAATgttatacaaaaaagaaaaattttcgagCACAGTGTCGAGATCCGTCTTGCAAACACATCTATAGATACGTGCAGTTTACAGTTTGCAAAGATCCTGAATTTAAGAAACACATACAAACAGAGCATCCAGATTTTTATCAGCATGaagagaataagaaaaaaaacgaggcCTGGAATTATTTTAGGCTAACAACAGAAAAAAACGAAGCATGTATTATATGTGATATAAGTGATACcccaattaaattttcacaaaatgaaaacttatcgaaacacataaaaaaacattcggAACTAGAAAAAAAGCTTGCACACCAACAGAAAGAAGATTGGGTTTGGAAATACCTGGAACAACTTGAAGATTTTTCTGCTAAATGTAAGCTTTGTGtgaatgaaacaaaaaaaataaaattaaaattaacaacacaatttttacaaaagcaCATGGCTAAGCATGGAAAAAAGTTGCCAGAAATAAAGTCACAGATAAACAGAGATAAACagtctttaaaatatcatactGAAAAGcagtacttttttaataaatgttatacaaaGCCTGTGAATTTGCGAACAGAATGTCGATTTTGCGAACGTAACTTTGAATGTGTCTCCTATAAATCGTTTCAGCTACACATAAAgaaacatacatttatttggAACAATGAAGAATCTACAAAGAAAGCACATGACGAGAACTGGTTATATCTTAGGTTTACGAGCGAAGAAGCAGAAGAaatagaatgtattttatgtaaaatacctGTGCTAAATGACCAAATAAAGAATCAcacaaaatatcatattaaaaaaggtCCATCCTATATATATCAACATTGGTCACGTAAATACGTAAGACAAGAAGAAGATAATATGATATGTATAAtttgtgaagaaaatataaacgttaattttaacaaagcgAAATTAAAAAGCCATATCTCTGATACACATAAAGACGAGATGAAAAGAATAaacgaagaagaaatattttggaaatcgcaaactgaaaaaaaaagctgGTTGCAAGAATATTATACAGATGCTGGTGATTTTCGAGCAGAATGTAAACTTTGCGAACGCAAAGTAGTATATATCAAAgaaacacaatttaaaaaccACGTAAACGACGTGCATTATGAAGTTCACCATCTTgaagaacataaaaaatatccacAGAATAAGTACCTAGAACAGTGGAATTATGTAAGGTACACAAATGACATTGAATCGGAAGAACCAAACACAGAATGCATGATATGTCAAAAAAATGTCACACTACCTCACATAGATCATAATCCACGCGAGATAGAAAACTATGATTATCATTGGGCACTTAAATACGCGAGACAAGATGGGAATCTTGCGGAATGTACGATATGTCAAACACCAGTAGACTTTGAATGTGACATGCACAATTTAGAAAACCACGTATCATCTGTACATCAAAAGGAATTGAaaagaagacaaaaaaaagaacaaaagataGAACAAATAGAACAAGGAACAGCACACGATGAAGCTACACCGTCGACAAGCtacgcaaattaa
- Protein Sequence
- MCWEKRVHPMIAECYTKKKNFRAQCRDPSCKHIYRYVQFTVCKDPEFKKHIQTEHPDFYQHEENKKKNEAWNYFRLTTEKNEACIICDISDTPIKFSQNENLSKHIKKHSELEKKLAHQQKEDWVWKYLEQLEDFSAKCKLCVNETKKIKLKLTTQFLQKHMAKHGKKLPEIKSQINRDKQSLKYHTEKQYFFNKCYTKPVNLRTECRFCERNFECVSYKSFQLHIKKHTFIWNNEESTKKAHDENWLYLRFTSEEAEEIECILCKIPVLNDQIKNHTKYHIKKGPSYIYQHWSRKYVRQEEDNMICIICEENINVNFNKAKLKSHISDTHKDEMKRINEEEIFWKSQTEKKSWLQEYYTDAGDFRAECKLCERKVVYIKETQFKNHVNDVHYEVHHLEEHKKYPQNKYLEQWNYVRYTNDIESEEPNTECMICQKNVTLPHIDHNPREIENYDYHWALKYARQDGNLAECTICQTPVDFECDMHNLENHVSSVHQKELKRRQKKEQKIEQIEQGTAHDEATPSTSYAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -