Lhum008045.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:147015-148953[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.1 4.9e+02 0.2 0.1 33 44 48 59 40 59 0.89 2 9 0.11 17 4.9 1.9 4 40 74 108 71 111 0.76 3 9 0.0028 0.43 9.9 2.0 3 43 126 167 124 168 0.84 4 9 0.00051 0.079 12.3 0.8 13 44 200 230 193 230 0.85 5 9 0.18 28 4.2 0.0 3 22 246 265 244 271 0.93 6 9 1.9e-05 0.003 16.8 1.1 9 43 301 332 294 333 0.88 7 9 0.01 1.6 8.1 0.1 6 43 360 394 358 395 0.85 8 9 0.093 14 5.1 0.1 10 26 421 437 412 442 0.75 9 9 0.0041 0.63 9.4 0.1 6 44 457 494 452 494 0.86
Sequence Information
- Coding Sequence
- ATGAGTGTTGAAGAGCGAATTCAAAAATTCTTCCCCTGGGTAGAggaatgttttattaaaactgaCAATTTTCGTGTACAGTGTCGAAATTTATCTTGCCAATCAAAcgaagaaagatataaatacttGGAGTTTAAACGTCATACATTTAAGAACCACATACGTGACACGCATCCAGATTACCATCAGCATGAAGAGAAGATGGCGAAAAACAAAGACTGGAAATGTTTTAGGCTAacaaaagacaaaaagaaagcatgtattttatgtgatattgcccgaaagaaattttcacaaaatgaaAACTTATCGGAACACCTAAAAAATCATTCAAAACTAGAACAAAATTTAGGACGAGATAAAAATGAAGCTTGGTATTGGAAATACTTGGAACAAACTGAAGATTATTCTGCTAAATGTAAGCTTTGTACACATAAACCAAAAAcagatgaatttattataaatcttgagaaaatgagaaaacacATCTTACAACATCATAAAGAAAAGAGccgcttaataaatttacaatataaaaatacttgggaatttcaaattgaaaacCACTATTGGttgaataaatgttataaaaggcctaaaaattttctagcgcaatgtaaattttgcgagaaaaaaattacatatgtcaAATCTGAAAGCATTGAGATTCATATGGAGAAAGAACATCCATTACTTCACAAAGAGGAAAAACTTAAATTTCAGGCATGCAACACATACTGGCAACATTTAAGGTTTACGGATGGATTATTAACAGGAATACAATGTATGAAATGTTTTCTACTTATACAAAGTGACGAAGCAGAAATTCATGTACAGCATCATTTTACAGACGGTCTAGAACCAGGTACAAGAAAACATTGGACTTTAAAATACGCAAGACAAAACGCAGATAGTGTGACATGTgtgttttgtgaaaaaaatttaacccTTACGGCGAAAATTACTGAGTTAAAAAAGCATGTACAAAATTGTCATATAGAAGATATGAATACAATAGACAAAGAAAACTTATTATGGACTCAACTTATAGGTGAACAATGGAAGTggttggaaaaatattatatgaatgttgcaaattttcgagcagaatgtaaattttgcaaacacaAAGTACCATATATCGAGTATACACAATTTGAGCAACACATGTGGGATCAACATTTTGTTATTGCCTGCCTTGAAGAatcaaaaatgataaaaatctgGAAAGCTGAGAAATATGTAAGATACACAAATAATGTAACAGAACATACATTAGACGTAGAATGCAtcatatgtgaaaaaaatgtcgcACTACCTCACACAAAACATTCTCCATATGAGCTGCTATTCGATTCTCATTGGGCACTTAAATACGCGATACAGAATGGACAAGTTGCAAGTTGTGTTCTATGTAAAGATGAAGTAAACTTTAAATGGGCCCtggaaaatttagaaaaccaCATGACATCTATACATCCAGAGAAACGGAAACAAATACGTCAAATAGATTTGGTACAAGGAACAGTACACGACCAAGCTACACCGTCGACAAGCTACGCAAGTTGA
- Protein Sequence
- MSVEERIQKFFPWVEECFIKTDNFRVQCRNLSCQSNEERYKYLEFKRHTFKNHIRDTHPDYHQHEEKMAKNKDWKCFRLTKDKKKACILCDIARKKFSQNENLSEHLKNHSKLEQNLGRDKNEAWYWKYLEQTEDYSAKCKLCTHKPKTDEFIINLEKMRKHILQHHKEKSRLINLQYKNTWEFQIENHYWLNKCYKRPKNFLAQCKFCEKKITYVKSESIEIHMEKEHPLLHKEEKLKFQACNTYWQHLRFTDGLLTGIQCMKCFLLIQSDEAEIHVQHHFTDGLEPGTRKHWTLKYARQNADSVTCVFCEKNLTLTAKITELKKHVQNCHIEDMNTIDKENLLWTQLIGEQWKWLEKYYMNVANFRAECKFCKHKVPYIEYTQFEQHMWDQHFVIACLEESKMIKIWKAEKYVRYTNNVTEHTLDVECIICEKNVALPHTKHSPYELLFDSHWALKYAIQNGQVASCVLCKDEVNFKWALENLENHMTSIHPEKRKQIRQIDLVQGTVHDQATPSTSYAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -