Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.7e-05 0.0027 17.0 1.7 17 44 33 59 22 59 0.86

2 6 0.0008 0.13 11.7 0.9 3 23 75 95 73 100 0.93

3 6 0.0063 0.99 8.8 0.4 5 38 123 153 117 156 0.83

4 6 0.0066 1 8.7 4.2 14 44 192 221 185 221 0.88

5 6 0.009 1.4 8.3 0.4 4 28 242 269 239 274 0.79

6 6 0.0032 0.5 9.7 0.0 5 44 288 324 285 324 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.7e-05	0.0027	17.0	1.7	17	44	33	59	22	59	0.86
2	6	0.0008	0.13	11.7	0.9	3	23	75	95	73	100	0.93
3	6	0.0063	0.99	8.8	0.4	5	38	123	153	117	156	0.83
4	6	0.0066	1	8.7	4.2	14	44	192	221	185	221	0.88
5	6	0.009	1.4	8.3	0.4	4	28	242	269	239	274	0.79
6	6	0.0032	0.5	9.7	0.0	5	44	288	324	285	324	0.88

Coding Sequence: ATGAAGAAAAGAGCCACTTATAAACAATCTTGGgaatttcaaattgaaaacaaCTATTGGTTGATTAAATGTTATAGAAAGCATGTGGATTTTCTAAcagaatgtaaattttgcaacaaagaACTTGAATATGTCGACTCTACAAACGTTCAGAAACATATGAAGGATAAACATAAAccaatttacaaaattgaaaaaagtaaaatgaagGCAGGTAACATAGCCTGGCAATACTTAAGATTTACGCatgcacaattaaaaataatacaatgtatGATATGTTGTGAAATTAAACCAAATATACACGAAGCAGAAAGtcatgtacaaaattattatctagaaccacaaaataaaaattgggcTTTTAAATACGCAAGACAAAACGCAGATAATATGACATGTAcgatttgtaaagaaaatgtaacagTTAGGGCGaacattaatcaattaaagaaGCATGCAGATacacatgaaaaatatatggaaaaaaTAGCCAAAGAACATCTATTATGGGGTACAATAATAAGGACTGTACAATGGATCTGGttggaaaaatgttatataaatgctgaaaattttcgagcacaatgtaaattttgcaaacacaACATACCATAtatcacacatacacaatttTTGGAACACATGAAGAACAAGCATAGTGCTCTTCACTcgcttgaagaaaaaaaaaatacacttaaTTTCTTCAAACACAAACCTCACTGGAATCATATAAGGTAcataaatgatttaatattaaatagaaatgttCTAGAATGCATCATATGTCTAAAAAAAACCAGACCATCTCACACAAATCATTTTCCATATGAGCTGAAATTCGTTTCTCATTGGGCACTAAAATACGCGagacaaaatgtaaaagttgcaaattgtactttatgtaaaaatgaagTAAACTTTGAATGGGCCCcggaaaatttagaaaaccaCATAACATCTGAACATCCAGAGGAACGGGAAAAAATACGTCAAATAGATTTGGTACAAAGAACAGTACACGACTAA
Protein Sequence: MKKRATYKQSWEFQIENNYWLIKCYRKHVDFLTECKFCNKELEYVDSTNVQKHMKDKHKPIYKIEKSKMKAGNIAWQYLRFTHAQLKIIQCMICCEIKPNIHEAESHVQNYYLEPQNKNWAFKYARQNADNMTCTICKENVTVRANINQLKKHADTHEKYMEKIAKEHLLWGTIIRTVQWIWLEKCYINAENFRAQCKFCKHNIPYITHTQFLEHMKNKHSALHSLEEKKNTLNFFKHKPHWNHIRYINDLILNRNVLECIICLKKTRPSHTNHFPYELKFVSHWALKYARQNVKVANCTLCKNEVNFEWAPENLENHITSEHPEEREKIRQIDLVQRTVHD

Sequence clustering based on sequence similarity using MMseqs2