Lhum003205.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:8197-84186[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.16 26 4.3 0.3 16 44 25 57 18 57 0.72 2 9 0.00072 0.11 11.8 1.5 1 39 69 106 69 110 0.68 3 9 1.7e-05 0.0027 17.0 2.1 4 43 125 164 124 169 0.93 4 9 0.00042 0.065 12.6 1.1 17 43 201 226 190 227 0.86 5 9 0.00064 0.1 12.0 0.7 4 26 244 266 243 277 0.92 6 9 0.049 7.6 6.0 0.1 5 38 295 325 290 328 0.75 7 9 0.016 2.6 7.5 3.7 14 43 364 392 356 393 0.88 8 9 0.0021 0.34 10.3 0.2 4 25 413 437 411 438 0.87 9 9 0.005 0.79 9.1 0.0 5 44 459 495 456 495 0.88
Sequence Information
- Coding Sequence
- ATGAGTTTTGAAGAGCGAATTCAAAAAAGGCACCCCTGGGTAGAGCAATGTTTTACTAAACAGGCCAATTTTCGAGTACAGTGTCGAGAACCATCttgcaaaaaaatctataaatacgtgaaaagtaacaaatatcttgaaattgaaaaacacaTAAAAAGAAAGCATCCAGATATTTATCAGCATGAAAAGAATAAGAGCGAAAGCGAAACCTGGAAATACTTTAGgctaacaaaagaaaaaaacaaagcatgtattatatgtgatatatgtgatagaattcaattttcacaaaatgaaAACTTATTGCAACATGTAAAAAAGCATTCAAAATTAGAACGAGATCTAGGACGTCAAAAAGAACAATGGGGTTggaaatatttggaaaaaaaggaCGATTTTTCTGCTACATGTAAgctttgtacaaataatacaaaaagagaatttaCTGTAGACATTAATCACATGAAAGAGCACATCTTAAACAAACATGAAGAAAAGAAGCACTTAATAGATCCACGATATAAACAATCTTGGgaatttcaaattgaaaacaaCTATTGGTTGATTAAATGTTATAGAAAGCCGGTGGATTTTctaacaaaatgtaaattttgcaacaaagaATTTGCATATGTCCACTATACAAACGCTCAGAAACATATGAAGGATACACATGAACTAATTTACGAAATTGAAATGTCGAAAATGAAAGAAGGTAACATAGACTGGCAATATTTAAGGTATACGGatgaacaattaaaaaaaatacaatgtatgATATGTTGTAAAACTATGCCAAATATACGCGAAGCAAAAAGTCATGTACAAGATGATATTAAACGCGGTCTAAGActaagtacaaaaaaaaattgggcTTTTAAATACGCAAGACAAAACGCAGATAATGTGACATGTACGAtttgtgaagaaaatgtaacaattagggcaagaattattgaattaaaaaaacatgcagatacacatgaaaaatatatggaaaaaaTAGCCGAAGAAAACCTATTATGGGGTACAATAATAAGGACTGTACAATGGATCTGgttgaaaaaatgttatataaatgttgaaaattttcgagcacaatgtaaattttgcgaaCACAAAATACCATAtatcacacatacacaatttTTGGAACACATAAAGAACAAGCATACTGCTCTTCACTcgcttgaaaaagaaaaaattttacctgATATCTTCGACGAACATCAGTGGAATTATATAAGGTATATAGATGGTTTAAtattagatgaaaaaaatctagAATGCAtcatatgtgaaaaaaaagacgaaCTACCTCACACAAATCATTTTCCACATGAGCTGAAATTCGTTTCTCATTGGGCACTAAAATACGCGagacaaaatgtaaaagttgcaaattgtactttatgtaaaaatgaagTAAACTTTGAATGGGCCCcggaaaatttagaaaaccaCATAACATCTGTACATCCAAAGGAGCGGGAAAAAATACGTCAAATAGATTTGGTACAAAGAACAGTACACGACCAAGCTACACCGTCGACGAGCTACGCaagttga
- Protein Sequence
- MSFEERIQKRHPWVEQCFTKQANFRVQCREPSCKKIYKYVKSNKYLEIEKHIKRKHPDIYQHEKNKSESETWKYFRLTKEKNKACIICDICDRIQFSQNENLLQHVKKHSKLERDLGRQKEQWGWKYLEKKDDFSATCKLCTNNTKREFTVDINHMKEHILNKHEEKKHLIDPRYKQSWEFQIENNYWLIKCYRKPVDFLTKCKFCNKEFAYVHYTNAQKHMKDTHELIYEIEMSKMKEGNIDWQYLRYTDEQLKKIQCMICCKTMPNIREAKSHVQDDIKRGLRLSTKKNWAFKYARQNADNVTCTICEENVTIRARIIELKKHADTHEKYMEKIAEENLLWGTIIRTVQWIWLKKCYINVENFRAQCKFCEHKIPYITHTQFLEHIKNKHTALHSLEKEKILPDIFDEHQWNYIRYIDGLILDEKNLECIICEKKDELPHTNHFPHELKFVSHWALKYARQNVKVANCTLCKNEVNFEWAPENLENHITSVHPKEREKIRQIDLVQRTVHDQATPSTSYAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -