Lhum008050.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:96750-105457[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 5.5 8.6e+02 -0.6 0.1 35 44 50 59 18 59 0.74 2 8 0.00031 0.048 13.0 0.8 4 40 74 108 71 122 0.78 3 8 1.7e-05 0.0026 17.0 0.2 3 44 126 166 124 166 0.93 4 8 0.15 23 4.4 0.1 3 22 182 201 180 216 0.90 5 8 8.4e-06 0.0013 18.0 7.6 15 44 240 269 212 269 0.92 6 8 0.024 3.8 6.9 0.7 7 44 297 331 293 331 0.84 7 8 0.0007 0.11 11.8 3.0 6 38 360 388 355 394 0.78 8 8 0.0028 0.44 9.9 0.0 6 44 406 443 401 443 0.87
Sequence Information
- Coding Sequence
- ATGAATTCTGGAGAGCGAATTCAAAATTGCTACCCCTGGGTAGAGGAATGTTTTATTGAAACTGACGATTTTCATGTACAGTGTCGAAATTTATCTTGCCAATCAAGCAAAGGAAGATTTAAATACGTGGAGCTTAAAAATGCTAAATTTAAGAACCACATACGTGACACGCATCCAGATTGGTATATGTATGAAGAGAGAATGGCGAAAAACAAAGACTGGAAATATTTTAGGCTAACAATAGACAAAAAGAAAGcatgtattttatgtgatattgccggaaagaaattttcacaaaatgaaAACTTATCGGAACACCTAAAAAATCATTCAAAACTAGAACAAAATTTAGGACGAAATAAACATGAAGCTTGGTATTGGAAATACTTGGAACAAACTGAAGATTATTCTGCTAAATtacaatgtaaaatttgcggggaaaaaattacatatgtcaAATCTGAAAGCATTGAGATTCATATGCAGAAAGAACATCCATTAATTGCCGAAGAGGAGAGACCTAAACATGAGGCACGCAACATATACTGGCAACATTTAAGGTTTACGGATGCATTATTATCAGGAATACAATGTATGAAATGTTTTCAACTTATACGAAGTGACGAAGCAAAAATTCATGTACAGCATCATTTTACAGACGGTGTAGAACTAGGTACAAGAACACATTGGACTTGTAAATACGCAAGACAAAACGCAGATAGTGTGACATGTAAGATTTGTGAAAAAACATTAACCCTTTCGGCGAGAACTACTCAGTTAAAAAGGCATATACATGATTGTCATAATGAAGTTTTGATGACAATAGCCAAAGAAAACTTATTATGGATTCAACTTATAAGTGAACAATGGAAGTggttggaaaaatattatataaatgttgtaAATTTTCGAGCAGAATGTAAACTttgcaaatacaaaatacCATATATCAAGCATGAACAATTTAAGAAACACATCCAAGATAATCATTCTGTTGTTAAAAATCTTGAAGAtgcaaaagaaacaaattttgcaacaaatctGAATATTTCGAAAGCTCAGTgggattataaaatatatttacatgatacaacattaaaaaaatcaaacataGGATGCATGATATGTAACAACAAACTACTTAATCATAATCACACAAGTCATGTAATCACAAATCATGATCCACATGAGCTGCTATTCGATTCTCATTGGGCACTTAAATACGCGATACAGAATGGACAAGTTGCAAGTTGTGTTCTATGTAAAGATGAAGTAAACTTTAAATGGGCCCcggaaaatttagaaaaccaCATGACATCTGTACATCCAGAGAAACGGAAACAAATACGTCAAATAGATTTGGTACAAGGAACAGTACACGACCAAGCTACACCGTCGACAAGCTACGCAAGttga
- Protein Sequence
- MNSGERIQNCYPWVEECFIETDDFHVQCRNLSCQSSKGRFKYVELKNAKFKNHIRDTHPDWYMYEERMAKNKDWKYFRLTIDKKKACILCDIAGKKFSQNENLSEHLKNHSKLEQNLGRNKHEAWYWKYLEQTEDYSAKLQCKICGEKITYVKSESIEIHMQKEHPLIAEEERPKHEARNIYWQHLRFTDALLSGIQCMKCFQLIRSDEAKIHVQHHFTDGVELGTRTHWTCKYARQNADSVTCKICEKTLTLSARTTQLKRHIHDCHNEVLMTIAKENLLWIQLISEQWKWLEKYYINVVNFRAECKLCKYKIPYIKHEQFKKHIQDNHSVVKNLEDAKETNFATNLNISKAQWDYKIYLHDTTLKKSNIGCMICNNKLLNHNHTSHVITNHDPHELLFDSHWALKYAIQNGQVASCVLCKDEVNFKWAPENLENHMTSVHPEKRKQIRQIDLVQGTVHDQATPSTSYAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -