Lhum001495.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:79262-81532[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.1 3.3e+02 0.7 0.1 30 40 26 36 2 39 0.80 2 9 0.024 3.7 7.0 0.4 4 39 53 84 52 91 0.84 3 9 8.8e-05 0.014 14.7 0.7 8 43 105 139 101 140 0.76 4 9 1.4e-09 2.1e-07 30.1 3.7 2 40 176 211 175 215 0.95 5 9 0.053 8.2 5.8 0.7 4 39 228 259 227 263 0.81 6 9 0.36 56 3.2 0.4 9 43 282 315 276 316 0.76 7 9 3e-09 4.7e-07 29.0 2.5 2 40 352 387 351 391 0.95 8 9 0.048 7.5 6.0 0.3 4 28 404 426 403 442 0.81 9 9 0.0002 0.032 13.6 2.9 9 43 458 491 452 492 0.76
Sequence Information
- Coding Sequence
- ATGTGTgggaatattatacaaaagtgTCGGACTTCAAAGCGAAATGCAAGTATTGCGAAAATAACATATCTTTATAAAGACTCGTCAAACTTCaaaacacatataaaaatacataaagaaatttcgGAAGACGAAGAAAAGACGAAACTAATACGATGgaagtatttcaaatatttaaaccaATACTCTTCACAATGTGTTATCTGTAATACAGAAGTTCCGTCTACAACTGAATCTGTAGAACATCATTTAAGTTTGCATTCTGAAGAAcaacaaaagaataatatatatggaaCAGATTGGACATTGAGATTTCggacagaaaaaaatgataatatagtggaatgtaatatttgtcataaagATATATCTCTTTCTATTCTAAAAAGTTTAGATCGTCATGCAAAAAATCAACATttggacaaattgaaaaatacgcaagaaGCATACGACACAGTTGGTTCGTCAGAACGCGTTTCATCACTTCAAACGGACACAATGTCTCTAAGCATTATAACTAACAAGAATGTGTgggaatattatacaaaagtgTCGGATTTCAAAGCGAAATGCAAGTCTTgcgaaaatacatatttttataaaaactcgTCAAACTTCaaaacacatataaaaatacataaagaaatttcgGAAGACGAAGAAAAGACGAAACTAATACGATGgaagtatttcaaatatttaaaccaATACTCTTCACAATGTGTTATCTGTAATACAGATGTTCCGTCTACAACTGAATCTGTAGAACatcatttaaatttgcattctgaagaacaacaaaagaattattatgtatatggAACAAATTGGACATTGAGATTTCGGacagaaataaatgataatatagtggaatttaatatttgtcataaaaatatatttctttctatttcaaaaagtttagATTATCATAcaagaaataaacatttggacacattgaaaaatacgcaagaaGCATACGACACAGTTGGTTCGTCAGAACGCGTTTCATCACTTCAAACGGACACAATGTCTCTAAGCATTATAACTAACAAGAATGTGTgggaatattatacaaaagtgTCGGATTTCAAAGCGAAATGCAAGTCTTGCGAAAATACATATCTTTATAAAGACTCGTCAAACTTCaaaacacatataaaaatacataaagaaatttcgGAAGACGAAGAAAAGACGAAACTAATACGATGgaagtatttcaaatatttaaaccaATACTCTTCACAATGTGTTATCTGTAATACAGATGTTCCGTCTACAACTGAATCTGTAGAACATCATTTAAGTTTGCATTCCGAACAGcaacaaaagaattattatgtatatggAACAAATTGGACATTGAGATTTCGGacagaaataaatgataatatagtggaatgtaatatttgccataagaatatatctctttgtttttcaaaaagtttagATTATCATAcaagaaataaacatttggacaaattgaaaaatacgcaagaaGCATACGACAGAGTTGGTTCGGCAGAACGCGTTTTATCACTTCAAACGGACACAATGTCTGAGTAA
- Protein Sequence
- MCGNIIQKCRTSKRNASIAKITYLYKDSSNFKTHIKIHKEISEDEEKTKLIRWKYFKYLNQYSSQCVICNTEVPSTTESVEHHLSLHSEEQQKNNIYGTDWTLRFRTEKNDNIVECNICHKDISLSILKSLDRHAKNQHLDKLKNTQEAYDTVGSSERVSSLQTDTMSLSIITNKNVWEYYTKVSDFKAKCKSCENTYFYKNSSNFKTHIKIHKEISEDEEKTKLIRWKYFKYLNQYSSQCVICNTDVPSTTESVEHHLNLHSEEQQKNYYVYGTNWTLRFRTEINDNIVEFNICHKNIFLSISKSLDYHTRNKHLDTLKNTQEAYDTVGSSERVSSLQTDTMSLSIITNKNVWEYYTKVSDFKAKCKSCENTYLYKDSSNFKTHIKIHKEISEDEEKTKLIRWKYFKYLNQYSSQCVICNTDVPSTTESVEHHLSLHSEQQQKNYYVYGTNWTLRFRTEINDNIVECNICHKNISLCFSKSLDYHTRNKHLDKLKNTQEAYDRVGSAERVLSLQTDTMSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -