Lhum002331.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:5061-7291[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 9.9e-05 0.015 14.6 1.3 3 28 13 36 11 52 0.85 2 6 1e-05 0.0016 17.7 0.5 4 27 116 137 113 152 0.87 3 6 3.6e-11 5.6e-09 35.2 3.7 3 44 192 230 190 230 0.95 4 6 0.059 9.1 5.7 0.6 4 32 246 270 244 288 0.73 5 6 1.2e-05 0.0019 17.5 0.5 4 27 293 316 291 331 0.89 6 6 1.3e-06 0.00021 20.5 1.3 3 27 371 393 369 394 0.93
Sequence Information
- Coding Sequence
- ATGTCTACATCactaaataatgcatataaaaaacatgTGTGGGAATATTATGTGAAACTATCGGATTTTGAAGCACAGtgcaaattttgcgaaaataaatatatatatttaagagatGAATACTTAAAACCACATATGgcaataaatcatataaaaatttggaaatacgaagaagagaaaacaataataaaaggGCCATGgatgtttttcaaatatttaaacaaatcttGTTTACAATGCGTTATCTGTGATACACATGTTCTGTCTACGTTCGAATATGTAGAAAATCACTTGAGTACACATACTGAAAAACAACGGGAAAATCATACATTTCGCAGTTGGCCATGGAAATATTTGACAAAGAGAGATGATTTTGTAGcggagtgtaatatttgtaataagaatatatctCTTCAAGTTTATGATTACTTGgttattcatataaaagtgaaacattgggacaaattaaaaaatacgcaagaaaCACATGACGCAGTTGGTTCATCACAATGCGTTTCATCACTTCAAACAAACACATCGTCAAAGTCACTAAAAATTGTAACTAAGAAACAtctgtggaaatattttgttaaacttCCGGATTTTAAAGCGCAGTGCATGTTTTGTaagaacaaatataattatataagcaCTATAAATTTCCGTAATCATATGGAAAAGtatcataaaaaaactttgataTACGAACAAGAAAGAAAACTAATGAAATTGCCATGgatgtattttaagtatttaaacaaATCACATTTACAGTGTATTATTTGTGACGCAAATGTTCTGTCTACATCCGAATCTGTAGAAAATCATTTGAGTTCACATTCTGAAAAACAACGAAAGAATCATATCCTTAGCAGTTGGCCATATAAATATTCGAcaaaaaaagatgattttgtagcggagtgtaatatttgtaataaaaatatatctcttcaGGTTCATGATTACTTggatattcatataaaagtgaaacattgggacaaattgaaaaatacgcaagaaTCACGTGACACAGTTGATTCGTCAGAACGTGTTTCATCACTTCAAACGAACACATCGTCAAAGTCACTAAAAATTGTAACTAAGAAGCAtctgtggaaatattttgttaaactgCCGGATTTTAAAGCGCAGTGCacgttttgcaaaaaaaatattgttatataa
- Protein Sequence
- MSTSLNNAYKKHVWEYYVKLSDFEAQCKFCENKYIYLRDEYLKPHMAINHIKIWKYEEEKTIIKGPWMFFKYLNKSCLQCVICDTHVLSTFEYVENHLSTHTEKQRENHTFRSWPWKYLTKRDDFVAECNICNKNISLQVYDYLVIHIKVKHWDKLKNTQETHDAVGSSQCVSSLQTNTSSKSLKIVTKKHLWKYFVKLPDFKAQCMFCKNKYNYISTINFRNHMEKYHKKTLIYEQERKLMKLPWMYFKYLNKSHLQCIICDANVLSTSESVENHLSSHSEKQRKNHILSSWPYKYSTKKDDFVAECNICNKNISLQVHDYLDIHIKVKHWDKLKNTQESRDTVDSSERVSSLQTNTSSKSLKIVTKKHLWKYFVKLPDFKAQCTFCKKNIVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00898939;
- 90% Identity
- -
- 80% Identity
- -