Lhum006932.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- -
- Assembly
- GCA_000217595.1
- Location
- NW:20137-27791[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1e-05 0.0049 16.2 2.2 14 43 26 54 16 55 0.84 2 12 0.0028 0.43 9.9 0.2 4 41 69 104 68 107 0.94 3 12 0.00024 0.037 13.4 2.8 4 44 120 157 118 157 0.87 4 12 4.3e-10 6.7e-08 31.8 2.8 2 43 195 233 194 234 0.95 5 12 0.0012 0.18 11.2 1.6 4 41 250 285 249 288 0.91 6 12 0.022 3.5 7.1 3.5 4 43 301 337 300 338 0.86 7 12 3e-06 0.00047 19.4 6.6 2 44 374 413 373 413 0.95 8 12 0.011 1.8 8.0 1.7 3 38 428 463 427 471 0.86 9 12 0.0013 0.2 11.0 2.6 15 43 487 514 477 515 0.86 10 12 3.2 4.9e+02 0.2 1.0 1 23 552 572 552 591 0.82 11 12 0.016 2.5 7.5 0.5 2 40 608 642 607 644 0.84 12 12 5.2e-05 0.0082 15.5 0.8 4 44 659 696 658 696 0.95
Sequence Information
- Coding Sequence
- ATGTCGGACGTAATATCAAAtctaaaaatcataataaataaaaaaaagttgtcgcaatattatatacaattattgaattttgaagCAAAATGCAGGTTttgcgaaaagaaatattgttacgTTACAAACAAAACTTTCAATATGCATATAAGAAGAATGCATGAACAAGTATTTAAGTATGAAGAAAAAGGACAAGATTGGCCGTGGAGATATTTCAAGTATATAAccgaattattattacaatgtgTCATCTGTGGTACATATATTCTGTTTAACAATCAGTCCGAACCTTTAATATATCACTTAAGCTCGCATTCTAAGAAACAATTGGAAGATCATACATTTAGCAGTTGGCCatggaaatattgtataaaatgtgGTGATTTTGAGATAAAGTGTATTATTtgtcacaaaaatttatctcttgTTATTGAACGAAAATTGGATCGTCATATGAAAATTGCACATCCGGGTATGTTGGAAAATACGGAAGAAACATACGAAATAGCTGGTTCATCAGAAGACGAATTATCACTTGAAATGGACACAAAGTCTCTTTCACTAAATGTCGCAAATAAAAAGCGgctgtggaaatattttataaaattgccaaattttaaagcaaaatgCAGGTTttgcgaaagaaaatattgttatatcagCTTGGCAAACTTTGTTGCGCATATAAAAAGAATGCAtgaacatatatttaatcatgaagaaaagagaataCAACAAAAATGGtcgtggaaatatttcaagtatttcaataaagaatttttgcaatgtattatctgtaaTGGATATGTTCTGTCTGGCAATAAGACTGACCTTTTAGTACATCACTTAAGCACGCATTCTAACAAACAATTGGaggattataaatttaatacttggccatggaaatattgtaaaaaatgtggTGATTATGAGATAGAGTGTAGTATTTGTTATAAAGTCTTATCTCCTGCTATTGAACAGAATTTGAATTGtcatataaaactaaaacatTCGGAGATTTTTGGAATTACGCAAGAAACAAGCAACACAATAGAACAACGCGTTCTTTCAcctgaaataaatacaatgtcTATGTCATTAAATATCGCAACTAAAGAGCGGCTGTGgctgtattatataatattatcagattttaaaataaaatgcagatcttgcaaaaataaatattgttacatcaACATTACACATTTTCGTGTACACCTAAagaaaaagcataaaaaagtttttaaatacgaagaaaagaaaaaattaaaagaatggCTGTGgagatatttcaaatatttcaacaaattattcttacaatgtattatctgtaGTGTAAATGTTCAGTCTAAATTTGAATCTTTGGTTAATCACTTACGTTCGCATTCTAAGAAACAACTGAAAGATCATGTATCACATAGTTGGCTAcggaaatattgtataaaaagtgGTGACTTTGAGATGAAATGTAGTATTTGTCGCAAAAACTTATCTTCCTCTATTGAACGGAATTtgaattatcatttaaaaatcaaacatCTGGACATTTTGGAAAAAACGCAAGAAACATGCGACACAATTGGTTCGTCAGAACGCGTTCTCTCACTTGTAACGGACACGATGTCTATGCCATCGAATACCACAAGAAAAAGTGAGCTGTGgcaaaattacacaaaattactcgattttcaattaaaatgcgGGATATGCAAATTAAGATATTGTTACTTCTTTATTATGGAATTCAAtcaacatgtaaaaaaaatacatgaaaaaatttataaatacgagAACGATAAATACAGAGAACGACAAAGCAAGCCAtggatatatttcaaatatttcaacgaaTTACActcacaatgtattatttgtggTGTAACTGTTCCGTCTAATTCTAACTCTTTAGTAAAGCACTTACGCTTGCATTTTAGTAGCACACTGGATAATTATAAGTACCGTGGATGGccttggaaatattttacaaaatgtgaTGATTTTGAGGTAGAGTGTAGTATTTGTTTCAGTAACTTACCTTCTTATACTATGTCGAGTATAAGCCatcatatgaaaaatatacatccaGACATGTTTGCAAATACGATAAAAACGTGA
- Protein Sequence
- MSDVISNLKIIINKKKLSQYYIQLLNFEAKCRFCEKKYCYVTNKTFNMHIRRMHEQVFKYEEKGQDWPWRYFKYITELLLQCVICGTYILFNNQSEPLIYHLSSHSKKQLEDHTFSSWPWKYCIKCGDFEIKCIICHKNLSLVIERKLDRHMKIAHPGMLENTEETYEIAGSSEDELSLEMDTKSLSLNVANKKRLWKYFIKLPNFKAKCRFCERKYCYISLANFVAHIKRMHEHIFNHEEKRIQQKWSWKYFKYFNKEFLQCIICNGYVLSGNKTDLLVHHLSTHSNKQLEDYKFNTWPWKYCKKCGDYEIECSICYKVLSPAIEQNLNCHIKLKHSEIFGITQETSNTIEQRVLSPEINTMSMSLNIATKERLWLYYIILSDFKIKCRSCKNKYCYINITHFRVHLKKKHKKVFKYEEKKKLKEWLWRYFKYFNKLFLQCIICSVNVQSKFESLVNHLRSHSKKQLKDHVSHSWLRKYCIKSGDFEMKCSICRKNLSSSIERNLNYHLKIKHLDILEKTQETCDTIGSSERVLSLVTDTMSMPSNTTRKSELWQNYTKLLDFQLKCGICKLRYCYFFIMEFNQHVKKIHEKIYKYENDKYRERQSKPWIYFKYFNELHSQCIICGVTVPSNSNSLVKHLRLHFSSTLDNYKYRGWPWKYFTKCDDFEVECSICFSNLPSYTMSSISHHMKNIHPDMFANTIKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -