Lhum002872.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- dnajc2
- Assembly
- GCA_000217595.1
- Location
- NW:442026-460881[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0001 0.069 12.6 0.0 3 31 490 522 488 534 0.86 2 2 1.3e-12 8.6e-10 37.9 0.0 3 44 609 654 607 656 0.92
Sequence Information
- Coding Sequence
- ATGCATTACgcattatgtaaaagcttgtgctctcggcttgaCTGTCATTCTATGTGTGATTCATTAACAAGGTGTGATCGTAGCAAGAATGACCGTAGAAAGAAAACAGCAAAATCTGCATggaaatatatacttaattgCAGAGAAGGAGGGCAACAGAGATTTTCCAATTCTTCAAGTAATAAAGATTGTGCaaAGCCAACTAAGACTAATACGAGCACAGCGGGTCCAGTAGTTCTATATTCAACTGCACAAGCATGGAGACTCCAGTTCCACCGCAGTCTCACACGTGCCAGTATCTCGGAATCCTCAGATGAAGAAGAGGATTTATCTCAATATCAGTTTGAGGATGATCTTGAATATCTTAGGTCGCTGGATCCGAGAGACTGGAAGGATCAGGATCATTATGCTGTGTTAGGCTTGAAAAATCTTAGGCACAAAGCAACAGAAGATATCATCAAAAGAGCTTACaagcagaaaatattaaagcacCATCCTGATAAACGCAAAGCGATGGGCGAGGAAATTCGGCCGGATGATGACTATTTTACATGTATAACTCGTGCTTGGGAGACTCTTGGAAATCAGATAAAAAGGCGAAGTTACGATAGTGTAGATccttattttaatgataatctTCCGGATGAAAAAGACTGtcgaaataatttctacaGGATGTTAGGTAAAGCATTCAAAGACAACTCACGTTGGTCTGTGAAAAAGCCTGTGCCGCTATTAGGTGGGCCATTCACACCGCGAGAAAAGGTCGAGAAATTCTACTCCTTCTGGTATGACTTCGATTCCTGGCGTGAATACTCATATCTTGATGAGGAAGACAAGGAAAGTGGTCAAGAccGAGATATGCGCAAATGGATCGAGAGGAAGAACAAAGCCACAAGAGCGAAACGGAAAAAGGAGGAAATGACACGGATACGTACTTTAGTAGATATGGCTTACAACATAGATCCTAGGATAAAGAAATTCCAACAAGACGATAAGGATAAGAAGAACGCTGCGAAAAGAGCGAAGCAAGAAGCAGCGAAGGCCAGACAgcaggaggaagagagagtaGCTCGCAATGCGGCTGAAAAGGAAAGattagagaaagaaaagagagaatccGAGGAGAGAGTAAAGCAAGAAGCGCTGAAACAGGAGCGAGAGGCGCAGAAAAAGGCATTGCGTAAGGAGAGAAAGGCACTCAGAGACTTCTGCAAagcgaataattattttgctgaaaattcGTCAGAGAGTCTTCGACACATGGAAAACGTGGAAAAAATCTGTGAGTTGTTTAAACTAGTGCAATTTGAGGAAGCGATGAAAAGATTGCAGACTGAGGGGAGAAGCGCGTTTTTGAGCATTATCGAGGAAACGGAGCGGAAGATTGAGGCGGAGCGTCGCATAAACGTAATCAATAATGATACACGAAACACGCCTGAGAAACAAACCAAGACTTGCACCGCGCCTTGGAGCGAGAACGACTTGCAGCTATTAATAAAAGCGGTTAATCTTTTCCCCGCCGGCACTAATCAACGTTGGGAAGTGGTGGCAAATTTCATCAATCAACATAGCAGTTCCACCAGCGGAGTCACCCGTGACGCCAAGGAGGTTCTAGCGAAGGCTAAGAGTCTGCAATCAACCGATTTCAGCAAATCAAGTCTGAAAGAACAAGCAAACAAAAAGGCCTTCGACAATTTTATCGCTGAGAAAAAGAGCAAGGATGCGATCGAGGAAAGAATGCCTGCTGTTACAGAGCGCTTAGATCATCCAATCGCAAATGGCGTCGCCGCTGAGCCGAAAGAGACGAAGAAAGAATCGTCGCCGTGGACACCAGTGGAGCAGAAATTTCTGGAACAAGCGCTGAAAACTTACCCCACCACGGTTCCGGACAGGTGGGATCAGATAGCAGCGTGTATACCCAGTAGAACGAAAAAGGAGTGCATGAGAAGatataaaGAACTAGTTGAACTTGTGAAAGCAAAGAAAGCGGCgcaaatgacaaaataa
- Protein Sequence
- MHYALCKSLCSRLDCHSMCDSLTRCDRSKNDRRKKTAKSAWKYILNCREGGQQRFSNSSSNKDCAKPTKTNTSTAGPVVLYSTAQAWRLQFHRSLTRASISESSDEEEDLSQYQFEDDLEYLRSLDPRDWKDQDHYAVLGLKNLRHKATEDIIKRAYKQKILKHHPDKRKAMGEEIRPDDDYFTCITRAWETLGNQIKRRSYDSVDPYFNDNLPDEKDCRNNFYRMLGKAFKDNSRWSVKKPVPLLGGPFTPREKVEKFYSFWYDFDSWREYSYLDEEDKESGQDRDMRKWIERKNKATRAKRKKEEMTRIRTLVDMAYNIDPRIKKFQQDDKDKKNAAKRAKQEAAKARQQEEERVARNAAEKERLEKEKRESEERVKQEALKQEREAQKKALRKERKALRDFCKANNYFAENSSESLRHMENVEKICELFKLVQFEEAMKRLQTEGRSAFLSIIEETERKIEAERRINVINNDTRNTPEKQTKTCTAPWSENDLQLLIKAVNLFPAGTNQRWEVVANFINQHSSSTSGVTRDAKEVLAKAKSLQSTDFSKSSLKEQANKKAFDNFIAEKKSKDAIEERMPAVTERLDHPIANGVAAEPKETKKESSPWTPVEQKFLEQALKTYPTTVPDRWDQIAACIPSRTKKECMRRYKELVELVKAKKAAQMTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733895;
- 90% Identity
- -
- 80% Identity
- -