Lhum000546.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- Myb_1
- Assembly
- GCA_000217595.1
- Location
- NW:660674-691859[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8e-15 5.5e-12 44.9 0.2 1 45 162 211 162 212 0.89 2 3 6.1e-22 4.2e-19 67.7 2.1 1 46 218 264 218 264 0.98 3 3 6.2e-22 4.2e-19 67.7 0.3 1 44 270 313 270 315 0.96
Sequence Information
- Coding Sequence
- ATGGATCACAGCATCGGGGGCAATGATACATTTGTGATCCCACTTGTCAAATCCGTCAAGCTCGACGCGGGACGCAATCGATCGACGAATTCGTGGTGCACGAGTGAGTGGGATCGACGACGCTTGACAGCGTCCGAAGAGACGAAAAAATTCCTCAGCACGAGAATCGCCTATCCGTGTTCTTGTCAATCAAGGGTGACACCGGCCATATTGTTTAAATCATTTAGCGCCCATAGCTCACGCGAGTTATGTATCCGACATAGATATTCACCCCTCAACGATGCAGCTATGAGCAGTATGTCTACTGATGGCCAGAGGTCTCGATCTGGTTACGACTCCACTAGCGGCGGAGATTCTGACATCGAGTACGGTACGTCGATCAACCAGGAGAATCAAGTACAAAGTCAAGTGCAAAATCAAGCGCCAAGCCAAGTGCAAAATCAAATATCGACTGCGAGTCACAATCAAGGGAAGCATATAAATAAAGGAAGATGGACCAAAGAAGAAgACGCTTTATTGAAGCAGTTAGTAAGCAACGCGGAACAGCTTGGCACTAGTCTACGGTGGGACGTTATATCCAGTCACTTTCCAGATCGGAGCGATGTCCAGTGCCAGCAGAGATGGGCGAAGGTCGTGAATCCGGAGCTGGTCAAGGGCCCATGGACGAAGGagGAGGATGAGAAAGTGGTTGAGCTTGTAGATAAATACGGTCCGAAAAAGTGGACATTAATAGCGCGACATCTGAAGGGTCGGATCGGTAAGCAGTGCCGAGAGCGATGGCACAATCATTTGAATCCGGGGATAAAGAAAACCGCGTGGACAGATGCGGAGGATAAGATAATTGTCGAGGCCCATCGTAAGTACGGCAATCAATGGGCGAAGATTGCCAAGCTTTTGCCGGGTAGAACTGACAATGCAATTAAGAATCACTGGAATAGTACGATGAGGAGGAAGTATGAAGGTGAAGAAGGAAGAGCTGCGATCAAAGGTAGAGGTAAAAGAAAAAGCACAGAAGGCGCCACTGTCATAAGAGATTCTCTTCTTCTGGAAGATAGTATTTGCGGCCagagtgaaataaaaattacctcGATTAGCGGCAACGATTCGGCGATTCTAACGGCCGGCAGCGTGTCGCAGACTTTCGATATCGACCAACTAGACTGGATCAAAACTTTGGGATCGCAGCATGCTGTCACGAGTTACCAAGATTCGTTGCACATAAACAGACGTACACACGGCAATGAAAAGCACGTGCAGTCTCCATCGAAGAGAGGATCCTCTCGAACGAAAACCGAAACAGTTTCATCATTTCCTAAATATTACAACCTGCAACAAATACAGAACGAAACGTCCGATGCGAAGAGCTCGGAAATAAGATTGATGCCGATGCCCGATCTGGAGGATCTAACTGAGCACGTAGAGAAGAAGAGCAGTCCGCCTCCTATATTGCGTAGACGAAGGAATGTTCATACTCTACCGCAGAGGATAGACACCCCAGACAGTGGAAACCACTCGGATTACATCATAATGAATCAAGCGTTGCAGACGGGAAACACCACTCCTTCGACTCCTATCAAGCAACTTCCATTCAGCCCTTCTCAGTTTTTGAACAGTCTGAGCCCGGAAACGTCTTGGCCATGCGCAAGTACTCCTAAAGGCAGCAGTCCCGGTCCACTTACGACTCCGCAACCGACCAGTTTTCGACGAAGTCAGAACGGATACAACAATTTCTATCAATACTTTGTATCAGACGGTAATACACCGAGGACGCCGACGCCATTCAAAAACGCTCTGGCTGCAATCGAGCGACTTAGCGGAACGGTACAGTTACCTGATACTCCTAGTCGGCTGGACGCTCTGACCGAGATAATCAAGCAGGAAACTGATTGTGAGAGTTTGGCCGGAACGAGTACGATCCTGCAGGACTCGGGCTACAGTACAATACGAAGGCGCGGTAAAGAGAACAGTGCACCGGGGGGAAAACGGGCGCGCAAGGCTCTTTCTCAGGCTTGGTCGAATACAGCCCAGGATAACTCTGACATGAGTTTTCTTGTGGAAACACCGAGTAAGAGTTTGGACACCTCTGCACTGTTCTCGCCTGCATCCATGGCGTTGGAAGATAGTTTCTTGACGGCAGGGACTAGTCCCGTGAAGACTCCTCACGACTGTACGTGTAtacaacaacaacaacggaAGCCTAATGCCAAGAGGGCAATCACGTTCGACACGTTAGACAGTCCTTGTTTTCACATCAGCCCTCTGCCCCTCAGGCCGGTAAAACGCGCTAAGTATTTGGAAACGCAATGGACAACAGTGGCGTGTGGTCGCACGCGCGATCAGATTGAGATGACCCGCGCTGCCCGATTTTTTTTGAGCAGTCACGGATTCCCGTTGCGTCCACGCTATTTGAACTTCTGA
- Protein Sequence
- MDHSIGGNDTFVIPLVKSVKLDAGRNRSTNSWCTSEWDRRRLTASEETKKFLSTRIAYPCSCQSRVTPAILFKSFSAHSSRELCIRHRYSPLNDAAMSSMSTDGQRSRSGYDSTSGGDSDIEYGTSINQENQVQSQVQNQAPSQVQNQISTASHNQGKHINKGRWTKEEDALLKQLVSNAEQLGTSLRWDVISSHFPDRSDVQCQQRWAKVVNPELVKGPWTKEEDEKVVELVDKYGPKKWTLIARHLKGRIGKQCRERWHNHLNPGIKKTAWTDAEDKIIVEAHRKYGNQWAKIAKLLPGRTDNAIKNHWNSTMRRKYEGEEGRAAIKGRGKRKSTEGATVIRDSLLLEDSICGQSEIKITSISGNDSAILTAGSVSQTFDIDQLDWIKTLGSQHAVTSYQDSLHINRRTHGNEKHVQSPSKRGSSRTKTETVSSFPKYYNLQQIQNETSDAKSSEIRLMPMPDLEDLTEHVEKKSSPPPILRRRRNVHTLPQRIDTPDSGNHSDYIIMNQALQTGNTTPSTPIKQLPFSPSQFLNSLSPETSWPCASTPKGSSPGPLTTPQPTSFRRSQNGYNNFYQYFVSDGNTPRTPTPFKNALAAIERLSGTVQLPDTPSRLDALTEIIKQETDCESLAGTSTILQDSGYSTIRRRGKENSAPGGKRARKALSQAWSNTAQDNSDMSFLVETPSKSLDTSALFSPASMALEDSFLTAGTSPVKTPHDCTCIQQQQRKPNAKRAITFDTLDSPCFHISPLPLRPVKRAKYLETQWTTVACGRTRDQIEMTRAARFFLSSHGFPLRPRYLNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -