Lhum007100.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- Xbp1
- Assembly
- GCA_000217595.1
- Location
- NW:565515-569585[-]
Transcription Factor Domain
- TF Family
- TF_bZIP
- Domain
- bZIP domain
- PFAM
- AnimalTFDB
- TF Group
- Basic Domians group
- Description
- bZIP proteins are homo- or heterodimers that contain highly basic DNA binding regions adjacent to regions of α-helix that fold together as coiled coils
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-13 1.3e-10 40.5 15.3 2 62 87 147 87 150 0.94 2 3 0.00054 0.33 10.3 2.5 30 57 129 156 127 163 0.89 3 3 1.8 1.1e+03 -1.0 0.1 35 49 238 252 233 260 0.76
Sequence Information
- Coding Sequence
- ATGAGCACTTTAAAGAGCGTCATCATCACCCTGCCTAAGGGACTGCCCAAAGCGATCTCGGCGAACGAATTCGCGTGCGCGACGACGCCCAGGCTGAATTTCGTCGCATCACTTTTGACAGATAAAGCGAAGATGGACGCCAGGAAGGTGACTGTCAGGCAGCAAGAGGAGGTGCACGATGATGGCGTCACGACTCTCATCAAGACCGCGGATGGCTGCGTACGCGGAAAGAAACGTCGGCTGGATCATTTAACGTGGGAAGAAAAATTGCAGAGAAAAAAGCTAAAGAACCGTATGGCAGCACAAACCTCACGGGACCGGAAGAAAGCCAGATTGGACGAGCTGATGGAGACGGTAAACACGCTAACGGAAAAGAACAAGCTGCTCACGCAGGAGTGCACAATGCTGAGGACACAGAACGAATCGCTATTGAGCGAAACAAAGAGactgaagagagagagggacaCGAGGACCACCATGAATGAAGatcagcagcaacagcagtaCTGCTCGATGTGTCAGACTCGTGTCGGCTGCGCTGTACCCTCGCTGGGATCTGCCGTATCCCCTGACGACCCTCTGCCGCAGGGTGGGACAGCACAGCCGGCATCGTGCCTGACGCTGACGCCAGGAGGCCGTCCTGCTGAAGATTCTGACCCTCTACCTCCTCTCGAGGAGCTGTTTAGCGACCTCCAAAGTGACGACTACATCGAGCGACTTGAGGAGCTTGCCGAAAGCCTTCTGCGAGAAGTTACCGCTGAAATGGAAGCAAATCCTCATAGATCAAATGAACAAGTGTCCAATAAGGAAGATTCCGTTAAGAAACCTGACCATTCAGAAACAGTGGTGGGGCAGGCATCAGAAAATGTGGAAGCCGATCGAGTTGGTGGAAGCGTAAACGGCGCTTCTTATTTACGAGGTTCAACCGATTGGCATCCCATCGTCTGCAGCACAGCGAGCACAGCAGTCGCACCGTCCACACTGATCAAGACCGAGATCGAGATCAAGGAGGAATCCGAGCCGACACCAGACCTTGAGACCGTTTATGGCACGTACGACGAGGCGACCAATTCCATCACGATTATCTATCCGGGCGAGGAGAACGGCGAGTGCGTGGGCATTCAGGAATGCGTGCAGGAGGTGGTGAGCACCGTGGAACAcggcggcggcaacggcgTCTGCCACGTTGCGGACGACGGCGTTGTCGCGCGCCTCGCTGTACCCTCGAGTACGCATCTTGGCTACCCAGCACAGTTTTCACCGGCGTACACCGACACCATGTCACCCGCGATGAGCGACATACACTCAGACGCGGATAACTACGGCGTTTCCGCAAAGCTGGATTGCACCAGTCTGTCGGACGGCGGCTACGAGTCGCACGATTCTCCGGAGCCGCGTCGGTCGAACTCCCTGGCCGATCTCTGGCACGAGAGTTTCACAGAGCTGTTTCCAACGCTGGCCTGA
- Protein Sequence
- MSTLKSVIITLPKGLPKAISANEFACATTPRLNFVASLLTDKAKMDARKVTVRQQEEVHDDGVTTLIKTADGCVRGKKRRLDHLTWEEKLQRKKLKNRMAAQTSRDRKKARLDELMETVNTLTEKNKLLTQECTMLRTQNESLLSETKRLKRERDTRTTMNEDQQQQQYCSMCQTRVGCAVPSLGSAVSPDDPLPQGGTAQPASCLTLTPGGRPAEDSDPLPPLEELFSDLQSDDYIERLEELAESLLREVTAEMEANPHRSNEQVSNKEDSVKKPDHSETVVGQASENVEADRVGGSVNGASYLRGSTDWHPIVCSTASTAVAPSTLIKTEIEIKEESEPTPDLETVYGTYDEATNSITIIYPGEENGECVGIQECVQEVVSTVEHGGGNGVCHVADDGVVARLAVPSSTHLGYPAQFSPAYTDTMSPAMSDIHSDADNYGVSAKLDCTSLSDGGYESHDSPEPRRSNSLADLWHESFTELFPTLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -