Lhum005501.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- TEF
- Assembly
- GCA_000217595.1
- Location
- NW:2676228-2680128[+]
Transcription Factor Domain
- TF Family
- TF_bZIP
- Domain
- bZIP domain
- PFAM
- AnimalTFDB
- TF Group
- Basic Domians group
- Description
- bZIP proteins are homo- or heterodimers that contain highly basic DNA binding regions adjacent to regions of α-helix that fold together as coiled coils
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-13 7.8e-11 41.1 7.7 1 65 143 207 143 207 0.98
Sequence Information
- Coding Sequence
- ATGAGTTCGCACTCTCATGCGAGGACGATGTGCACCGGAAACGCAGTCTCTGGCGCATTTTCCGCGTTGCATCTCTTGCGAAGTTACAGTCTCTTCGCTCCGAGTTCAGatctGTACAGGTACGAAGCGTATCCGTCTCGAGACTATAGCTTCGAATCGGATATCTTATCGAATTCCATGGCAGCAGAGTCTCCATCCTCGCCGTTAAGACCCTCTTCTTTGTCGGCAACGTTTTCACTTCCCGGAACTCTGCTTCAGCCACCTTTTTTAGCGGCAGTGCCGCCCTTGATGCAATCCTTGAGTGTGCCTCAGCCGCTTTCAACTTCCCCTACTggTTCTATGAATCGTCATTTTATCACCACGAATGGTATAACTAGTTTACACAAAAGACCTAGAAGCGAAAAGAAACCTATCCCGGACGATCAGAAGgacgaaaaatattacgagaGACGTAAAAGGAATAATCAGGCGGCAAAGAAGTCGCGAGATGCTCGCAAAATCAGGGAGGATCATATTGCTTTAAGGGCGACGATGCTGGAGCACGAGAATGCGATTCTGAAGGCGCAGATAGTGACCCTTCGAGAGGAAGCACAATCCCTGCGGCATATGTTGATCAAACACGCCCCGGCGATACAATCGATCGAACGATCACTCTCCTCGATGACACCGGTAACTCTTTCTCCCCCACACACGACTCCGAATCTAGATTGTTAA
- Protein Sequence
- MSSHSHARTMCTGNAVSGAFSALHLLRSYSLFAPSSDLYRYEAYPSRDYSFESDILSNSMAAESPSSPLRPSSLSATFSLPGTLLQPPFLAAVPPLMQSLSVPQPLSTSPTGSMNRHFITTNGITSLHKRPRSEKKPIPDDQKDEKYYERRKRNNQAAKKSRDARKIREDHIALRATMLEHENAILKAQIVTLREEAQSLRHMLIKHAPAIQSIERSLSSMTPVTLSPPHTTPNLDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01244979;
- 90% Identity
- -
- 80% Identity
- -