Lhum003822.1
Basic Information
- Insect
- Linepithema humile
- Gene Symbol
- ATFC
- Assembly
- GCA_000217595.1
- Location
- NW:4934924-4943366[+]
Transcription Factor Domain
- TF Family
- TF_bZIP
- Domain
- bZIP domain
- PFAM
- AnimalTFDB
- TF Group
- Basic Domians group
- Description
- bZIP proteins are homo- or heterodimers that contain highly basic DNA binding regions adjacent to regions of α-helix that fold together as coiled coils
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8 3.5e+03 -2.6 0.1 38 52 122 136 117 145 0.66 2 2 2.7e-15 1.7e-12 46.5 12.7 2 64 295 357 294 358 0.96
Sequence Information
- Coding Sequence
- ATGTCGAGTCAAGATCAGGAGATGTGGTTATGGAAGTACGAGCCGGTGTCTCCCAGTGGGACACCGCCGCTAGAGATTGATAATGATTGGCTTTTATTCGATGACAAGTCTACAGAACTTTCTAAAAATGCTGCGGAGCCTGTTATGTATGATGATCATCACCCCTCCCGTGCCCAAGTAGCTAAAAAACTCTTAGAAGAATTGGACGAATGGATCAAAGAAGAACCCTTCTCAGATTGGCTTGAAGAGAAGATCGAGCTGCCTATATTCGATCAAATATCCGTTTCTGAGAACGGCCAAAATAAACCACCGCAGCCGCCGCCGATCGTCTATCCGACTATCGTGAAAgtgcagcaacagcagcaagaTGACACGCAAACTCTTTTACAAGAATTTGAAACTGTCTTGGGAGATGTCGAAGCTTGCCATCAGATCATTCCGCCAACCAGCTCCACGCTCACTCCTCCGCAATCACCCCCTCATAAAGCAATCAATGTTGACACGCAGCTGTTGGTCACCCTACAGCCCGTTCAACCTCTGTACACCGCCGGTCAACCCATTTACAATATGGTCGTTCCAGCGGAAGAATCGCTGTACGCAAGCGATTCGCCGCGCCAATGGAACCCCGAGAATATATCGCTAAGTCCGCTCGGCGGGGATGTTGCGAATGACTTAGCGGTAGTGGATGAATATGTTCGCTCACACGCTGAGGACATACCGTCACCGTCGAGTCCGTGCACCAGCTCCGGCGGCAGTTGCATCTCGAATGAAGATTCCGCCGATGATCCCGATTGGAGTTTTGAGTCTGAGAGACAAAGTTTGAAACATTCAGTTTATGATTCATCGAAGAACCGTCACAAACCTTATTCTCGACCATCTGTCGAGGACAAGAAAGTACGAAAAAAGGAACAGAATAAGAACGCGGCTACGCGTTACCGTCAGAAGAAGAAGCAAGAAATTAAGGAGATAGAAGGCGAGGAGCGCGAGCTTACCGAGCATAACGAAAAGTTGAAAACTCAACTGGAGGAAGTGCAGCGCGAGATAGGATATCTGAAAGGATTGATGAGAGAGCTGTTCAAGGCTAAGGGTCTTCTTAAGTAA
- Protein Sequence
- MSSQDQEMWLWKYEPVSPSGTPPLEIDNDWLLFDDKSTELSKNAAEPVMYDDHHPSRAQVAKKLLEELDEWIKEEPFSDWLEEKIELPIFDQISVSENGQNKPPQPPPIVYPTIVKVQQQQQDDTQTLLQEFETVLGDVEACHQIIPPTSSTLTPPQSPPHKAINVDTQLLVTLQPVQPLYTAGQPIYNMVVPAEESLYASDSPRQWNPENISLSPLGGDVANDLAVVDEYVRSHAEDIPSPSSPCTSSGGSCISNEDSADDPDWSFESERQSLKHSVYDSSKNRHKPYSRPSVEDKKVRKKEQNKNAATRYRQKKKQEIKEIEGEERELTEHNEKLKTQLEEVQREIGYLKGLMRELFKAKGLLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01098946;
- 90% Identity
- -
- 80% Identity
- -