Laur003998.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- nfxl1
- Assembly
- GCA_951813805.1
- Location
- OX638391.1:5891979-5905105[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 2.8e+04 -7.9 5.6 15 19 176 180 175 180 0.81 2 20 0.36 5.1e+03 -1.7 0.2 4 10 211 217 211 217 0.93 3 20 1.4e-07 0.002 18.7 17.3 1 19 225 242 225 242 0.99 4 20 2 2.8e+04 -4.3 1.5 6 10 268 272 268 272 0.95 5 20 2.2e-09 3.1e-05 24.5 15.0 1 19 278 296 278 296 0.98 6 20 2 2.8e+04 -4.1 1.6 6 10 321 325 320 325 0.89 7 20 1.8e-06 0.026 15.2 11.9 1 19 331 349 331 349 0.97 8 20 0.00064 9 7.1 15.8 1 18 384 401 384 402 0.97 9 20 3.4e-06 0.048 14.3 15.6 1 18 436 453 436 454 0.98 10 20 3e-10 4.2e-06 27.3 12.9 1 19 463 481 463 481 0.99 11 20 2 2.8e+04 -4.8 1.8 1 6 510 514 510 515 0.78 12 20 0.0032 45 4.8 4.9 9 19 529 539 527 539 0.90 13 20 0.0014 20 6.0 5.6 1 12 548 558 548 558 0.96 14 20 0.66 9.4e+03 -2.6 5.8 14 19 586 591 586 591 0.90 15 20 1.8 2.5e+04 -4.0 0.5 9 12 608 611 608 611 0.75 16 20 0.00098 14 6.5 6.7 1 12 627 638 620 638 0.91 17 20 0.004 56 4.5 15.1 3 19 667 683 666 683 0.92 18 20 2 2.8e+04 -4.1 1.4 8 13 688 693 687 693 0.72 19 20 2 2.8e+04 -5.1 2.1 6 10 718 722 717 722 0.81 20 20 6.3e-07 0.009 16.7 11.3 1 16 728 742 728 748 0.91
Sequence Information
- Coding Sequence
- ATGGCTGACAAATCAAAAAAGAATCCCTGGCATTCAAAAGCCAGGGACAAAACTGGTGCAAACTCAAACACCAAAAGTGGAACTGCAGTTGCTGTTCCCAAACAGACAGCACCCAAAGACACAAATACCAGGTTTCAGGAAGCCAGCGCCAAGATGCAGGCTTCAGTGCAACGTCATATTCAGGAATATGAGTCTTCTTCGGAAGAAGAAGACTTGGAAGATGGAAAAATTCTAGattccGTTATGGTCAACTATAAAACCAGCAGCAAGGATGCAGATTTGGGCAGGACCAAAGAGTTCCTGGAACAATCTTTTCACTCTGGTGCAGTCATTTGCCTTGTATGCATCGCCTCAGTTAAGAGAACACAAGCTATATGGAGTTGTGAGTCTTGTTACACGGCATTCCACTTGCTGTGTATACAACGTTGGGCTAAAGACACGGTCTATCAGCAAGCTCAAAACATGGAACCTAGCCTGGGAGAGTTACCCGTTCGTGATAAGTCTTTCAAAAAACTTCAATGGTGCTGCCCCAAATGCAGATCCCCGTACAGCGAGgctGAGGTTCCCAACAAATATCAATGCTTCTGCAAAAAGACGTACGATCCGGTATTTCATCCCTGGGCAGTTCCGCATTCCTGCGGAGATATCTGTAACAAACCATTACAACAGAATTGTGGTCATCAGTGCCTGTTATTGTGCCATCCAGgGCCATGTCCACCTTGCCCGAAGATGGTAAGCCTGCCCTGCGCCTGCGGGCAGTCCAAGCCCAAGCCAGTTCGCTGCAGTGTGTCCAGTTGGTGCTGCACTCAAGTGTGCAACAAATCGCTGGATTGTGGCCAGCACAGGTGCAATAAAAAGTGCCATACCGGCGAATGCGACCCCTGCTCCAAATTCAAAGAGCAATATTGTCAGTGTAAAGGCAGTAAAGACAAGATTCCATGTTCTCAGACAAGTTGGCAATGCAccaagGTTTGTGGTAAACGATTGACTTGTGGCTACCATACATGTGAGAAAGTTTGCCACACAATCACCTGCGGCCAATGTCCCTTCACTGGCTTCCAGAAGTGTCCGTGCGGCGCGGTGCAGAAGGAGGTCACCTGTCCCACGGATGTGTCCTCCTGCGGTGGAAGTTGTAATAAAGTTTTGCCGTGTGGGAAGCACATCTGCCCACACAAATGCCACAAGGATAAATGCCCGCAGtgTTTGGAGCTGGTAGACAAAAAGTGCCGCTGTGAAATGCATACGAAACAGCTGCCGTGCAGTAAGCAATACCTCTGTGAGACCAAATGCAAGAACGTGAAAGAGTGCGGCCGCCATCCGTGCAACAAGAAGTGCTGCAACGGAGACTGTCTGCCGTGCGACAAGGTCTGCGGCAGAAGTCTGCAGTGCGGCAAACACAAGTGCATCTCCATCTGCCACCGTGGCCCTTGCTACCCGTGCCCGCAGTTGGCCAAGGTGCCTTGCCGCTGCGGACGCACTTTCTATTCAGTGCCTTGCGGCAGGCAGAAGAAGGCCAAACCGCCCAAATGCTCCCATAACTGCAGAATACCAATACCGTGCAGCCATGTTAAAGAAAACACGCACAAGTGCCACTTTGGCACTTGCCCCCAGTGCAAGGAGAAGTGTGGAAAGCTCCTTTATTGCGGGCACTCCTGTGTCGCCGTGTGCCATAGCTGTGTGCCCGTTGTGTTGTCCACAGTTAAAGCTGATACTCCTTGCGAACTTCAACAGCCAAAGGTGGAGGTTCGAGCTTTGCCTTGCCCACCTTGCAAGAAGCCAGTGCAACGGAGCTGCTTGGGTGACCACGAGATTACGGAGTGGCCGTGTCACTCGGCGCGTGTGTCTTCGTGTGGAAGGAAGTGTGGTCGCCCATTAGCCTGCACCAACCACAAGTGTTCCAAAGAGTGCCATCCTGTCGCCGATGGACAGTCTTCACAGATTGCAACAGACTGCGAGAAGTGTGACGAGCAGTGCAAGCTTTCACGTCCACCAGGCTGCACGCACCCGTGCAAGAAGCGCTGCCACGCTGCGCCCTGTGAGCCCTGCCAGCAGTTCCTGAAGCGCAGCTGTCACTGCGGTCTCACAGAACTGTTCCTGCAGTGCAACCTCTTCACCGCCACCGACGCGGCACAGAAGGAGAAGAGCCTGTCGTGCCAACAGCAGTGTATCCGCCTTctGGACTGCGGACACAGGTGTCGTTCTACTTGTCACTCTGGAGATTGTCCAAAGGAAGAAATGTGCACGCGGAAATCAAGAGTATACTGTCCTTGTCGCAGAATCAAGAAAGATGTAGCTTGTCATTTGgTGCAAGACAACACCCTTTCGTGTGACGAAGCGTGCCTACTAAAAAAAGCTGAAGATTCTCAGATCCAACAAGAAGAAGAAAGCAAACGATTGCTTGAAGAACAAATTAAGAACAATCGTGAAATTGCCGAATTTGAaaagaaatttggcaaaaagaaatacaaacagcGCAAAACAGTCCAGAACGAAGAAGATGACAGTTCCGACCCAGATTCGATAAGTGCTTCAGTCACTGAGAAAGAACTGCTTCGACAATGCATCAGAGGAATGGCTGAGGGAGATAGTGCCGACCTTGTGAAAATGGCAGGAGGTTAA
- Protein Sequence
- MADKSKKNPWHSKARDKTGANSNTKSGTAVAVPKQTAPKDTNTRFQEASAKMQASVQRHIQEYESSSEEEDLEDGKILDSVMVNYKTSSKDADLGRTKEFLEQSFHSGAVICLVCIASVKRTQAIWSCESCYTAFHLLCIQRWAKDTVYQQAQNMEPSLGELPVRDKSFKKLQWCCPKCRSPYSEAEVPNKYQCFCKKTYDPVFHPWAVPHSCGDICNKPLQQNCGHQCLLLCHPGPCPPCPKMVSLPCACGQSKPKPVRCSVSSWCCTQVCNKSLDCGQHRCNKKCHTGECDPCSKFKEQYCQCKGSKDKIPCSQTSWQCTKVCGKRLTCGYHTCEKVCHTITCGQCPFTGFQKCPCGAVQKEVTCPTDVSSCGGSCNKVLPCGKHICPHKCHKDKCPQCLELVDKKCRCEMHTKQLPCSKQYLCETKCKNVKECGRHPCNKKCCNGDCLPCDKVCGRSLQCGKHKCISICHRGPCYPCPQLAKVPCRCGRTFYSVPCGRQKKAKPPKCSHNCRIPIPCSHVKENTHKCHFGTCPQCKEKCGKLLYCGHSCVAVCHSCVPVVLSTVKADTPCELQQPKVEVRALPCPPCKKPVQRSCLGDHEITEWPCHSARVSSCGRKCGRPLACTNHKCSKECHPVADGQSSQIATDCEKCDEQCKLSRPPGCTHPCKKRCHAAPCEPCQQFLKRSCHCGLTELFLQCNLFTATDAAQKEKSLSCQQQCIRLLDCGHRCRSTCHSGDCPKEEMCTRKSRVYCPCRRIKKDVACHLVQDNTLSCDEACLLKKAEDSQIQQEEESKRLLEEQIKNNREIAEFEKKFGKKKYKQRKTVQNEEDDSSDPDSISASVTEKELLRQCIRGMAEGDSADLVKMAGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -