Basic Information

Insect: Limnephilus auricula
Gene Symbol: stc_1
Assembly: GCA_951813805.1
Location: OX638399.1:20155256-20171790[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2 2.8e+04 -4.4 1.6 15 19 571 575 570 575 0.81

2 12 0.11 1.5e+03 -0.1 0.4 4 10 604 610 603 610 0.94

3 12 1.3e-06 0.018 15.7 13.6 1 18 616 633 616 634 0.95

4 12 1.8e-07 0.0025 18.4 13.9 1 19 670 688 670 688 0.99

5 12 3.1e-10 4.4e-06 27.2 16.9 1 18 729 746 729 747 0.98

6 12 0.0022 31 5.4 23.7 4 19 794 809 787 809 0.89

7 12 0.0086 1.2e+02 3.5 13.1 1 11 849 859 849 871 0.78

8 12 4.1e-09 5.8e-05 23.7 14.0 1 19 876 894 876 894 0.98

9 12 2 2.8e+04 -6.2 11.1 8 18 939 951 933 952 0.72

10 12 4.7e-08 0.00066 20.3 13.5 1 18 988 1006 988 1007 0.93

11 12 0.13 1.8e+03 -0.3 12.4 1 19 1017 1038 1017 1038 0.94

12 12 0.1 1.4e+03 0.0 0.2 7 13 1053 1059 1053 1060 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2	2.8e+04	-4.4	1.6	15	19	571	575	570	575	0.81
2	12	0.11	1.5e+03	-0.1	0.4	4	10	604	610	603	610	0.94
3	12	1.3e-06	0.018	15.7	13.6	1	18	616	633	616	634	0.95
4	12	1.8e-07	0.0025	18.4	13.9	1	19	670	688	670	688	0.99
5	12	3.1e-10	4.4e-06	27.2	16.9	1	18	729	746	729	747	0.98
6	12	0.0022	31	5.4	23.7	4	19	794	809	787	809	0.89
7	12	0.0086	1.2e+02	3.5	13.1	1	11	849	859	849	871	0.78
8	12	4.1e-09	5.8e-05	23.7	14.0	1	19	876	894	876	894	0.98
9	12	2	2.8e+04	-6.2	11.1	8	18	939	951	933	952	0.72
10	12	4.7e-08	0.00066	20.3	13.5	1	18	988	1006	988	1007	0.93
11	12	0.13	1.8e+03	-0.3	12.4	1	19	1017	1038	1017	1038	0.94
12	12	0.1	1.4e+03	0.0	0.2	7	13	1053	1059	1053	1060	0.83

Sequence Information

Coding Sequence: ATGGCTAACTGGAATAACAATGGGTACTACTCAGAGGGCTGGCAAGGGGAGCAGCAACGTTACCCCCCGGGAGCCCCTTCCGGCCAGTACGTGGGATTCAATGACTTCCTTCACCAGTTTCAGCAACTGCCGGCCAATTACCCGGCCTATCCTCCGCCAGCCATGGGGGCCCCATTCCAGCCCGCCCCGGTGATGATGCCCGTCCCTGGGCCCTCCTACCCTCCAGGGGGATATATCGCCAATAATTCTCAGACTGAATACCCTAGCCCTAGTAATAATTACGATAAAGAAAATACTAGTAATAATTCTTCCTCGAATCACTTTTCCAAACATAATAGAAGAAATGATAAAAAGAAACCCCTTCAGCAAGAGGAATCTGGCAATGCAGGTGCGAGGGAGGAGGTTACTTCACACTCCAAGTTAGTGGCTACAGCTGAGGAGTTTATCCCTCAGAGTGCCCGGACAATCCCCGCTCAGGAGCCTGCACGGGGGGAGGCGATCACCCTCACCCCTTCCATCCCCGCTTCCGACACTAGCAGGAACCAGGCCAGATCCGGCGGCTCCCAGAAGTGGAAATCTAAAAACACTCCCAAGGAAGCTATCAACAGCACCAACTGGAGAAGCAGGAATGAGGAGGAACCATGGGAAGCAGAATCTACTGCCAGTGTGGAGCAGACTTCCTTCACTGTGTACAATAGCAACAGGCCACCCAGTCAGGAAGGGGGCCCCTCCAGGGCTTCCCCCACCACACAAGGCCCCAGGCAAAGAAGAGACAACACTAACAGAAATTCCAATGTCAATGAGAAAGGCAGATTTAACCAAGCTGATAATCGCAATAATGTTAACAATACAACTTCCGAGACTGATAGAAGTAAATCTAAAATGTCTTTTAATGTTAACGAGAGTTTTGGCAGAAGCAACCAAGTCGTAGCGGAAGAGGGAAGGAATGGGCGAGGGGATAGGAGGCAACAAGATGATAGGGGGCAGCAAGAAGACAGAGGACAACAAGAAGACAGGGAGCAAGACAATAAAAGGGGGAGTGAGAACAGAAGAGGTGCTCAAGAAAACAAAGGAAGGAGAGGCGGAGACAATAGAAGAGCTGATAATAGGACCGTTGACGATACGAGACGGGGAGATAATAAAGCGGGAGGTGAAGACATCAGAAATGGAAATAATAGGAGAGGTGGTGACACCAGGAAACCAGAAGACAGGAGGGCAGTTAGGGATAATAGAACAGAAGAGAATTGGGGTGATAGAAAATGGGGAGATGACAGAAGAGGTGGAGAGAACAGAAGAATGGAAGATGGCAGAAGGAGAGGCAGAGAAAACCCCAGAGGTGAAGAGAATTGGCCCAGTGGAGAGGACAGAAGATATGGAGATGACAGAGAAAGGAGATACGGAGATGACAGAGATAGAAGATACGGAGATGATAGGAAAGTTAATGATAGGAGGGGAGATGATAGAAGAGTTAAGGGCAAGGAATTGAATAACAAGAAAATAACACCCAGAGATGGACTTCAAGGAGTTGGAGTGGGCCAGAGAGAGCGGCTGGCAGAACAGCTGGACCGCGGGGAGCTGGAGTGTCTGGTGTGCTGTGACCGTGTGCGCCAGACTGACTATGTGTGGGCATGCTGCAACTGCTACCACGTGCTGCACCTCAAGTGTGTGCAGAAGTGGGCGAGCACCAGTATTGTGGagGGGCAATGGCGCTGCCCCGCTTGCCAGAACAAGGAGCGCGGCGTGCCATCGGAGTACCGCTGCTTCTGTGGTGCGCGCCGCCAGCCCGAGTGGGTGCGCGGCACAGCAGCGCACAGCTGCGGCGAGCCGTGCGGGGGCCGCCGCGCCTGCGCCACGCACGCCTGCACGCTACCATGCCACCCGGGCCCCTGCCCCACATGCGATGCCACCTCGCGCCAACACTGCGAGTGCGGTGCCACCTCGCAGCTGCGCAAGTGCTCCCTGAAGACGCCCCTGCTGTGCGGGGGTGAGTGCGGCAAGCCCCTGGCCTGCGGGGCGCACACCTGCAAGGAAAAGTGCCACGCGGAGGCTTGCCCGCCCTGCCCGTTAAAGGTGGAACAGACATGCTATTGCCCACTGGCCACCACACGCAGTCCGGACTGCGACGCGTCCACGGTGGGCGTGTTTGGGTTCTCGTGCGGGGCCGAGTGCGGGCGCAAGAAGGATTGCGGCAACCACACCTGCTCTGACCCGTGCCACCCGGGGCCCTGCCAGCCCTGCGCCCTCGCCCCCAAGGCCGTCACCCGCTGCCCGTGCAGCCAGACCCTACTGAAGCAGGTGCGCACCTCCTGCCTGGACCCCGTGCCCGTGTGTGACCAGCTGTGCTCCTATCCGCTCAACTGTGGGCCCCCCGAGGAGCCCCACTGCTGCCAGTCCTCCTGTCACCACGGCCCGTGCCCCCCATGCCCTGGCAAGACCCCGGTGAGCTGTCGCTGCGGCAGTAAGGTGCAGGAGCTGGCGTGCGTGGTGCTGGATGCGGAGCGTCACACTGTGCGCTGCGGAAAGAAATGTACCAAGAAGCACTCGTGCGGGCGCCACAAGTGCCAGGAGCGCTGCTGCGTGGACGCTGAGCACCGCTGCCCGTTGCCGTGCACTCGCACCCTGTCCTGCGGCCTGCACCGTTGCGAGGACACCTGCCACCGCGGTCACTGCCAGCCCTGCTGGAGGACCAGTTTTGAAGAAATGCGCTGCCGCTGCGGTGCAGCTGTCCACTACCCTCCGGTCCCATGCGGCACGCGCGCCCCCGAGTGCACGCTGCCGTGCCGCGAGGTGCGCGCCTGTGGCCATGACGCGCTGCACGCCTGCCACCCTGCACCCTCTCCCTGCCCGCCCTGCGTCGTGCTCACCCAGCGCTACTGCCACGGCCGCCACAAGATGAGGAAGACCATCCCGTGCCACCAGGAAGACTTCTCATGCGGGCTGCCCTGTGGCAAGGACCTGCCGTGCGGGAAGCACAAGTGTGTGGAGACCTGCCATCGAGGACCTTGCCCTACTGTCTGCAGCCAGCGCTGCTCCGCACCACGGCCGGGCTGTGGCCATGCTTGCGCAGCGCCCTGCGGCCACGCCGCCCCCTGCCCCTCCACCTCGCCCTGCCGCTGCGTGGTTCCGGCGACGTGCCCCTGTGGCCGCCGCTCGCTGCAGCGCCCCTGCCACGAGCAGCGCGCCATCCTGCGCCGCGTCACGGCGCTGCCCGGCCCGCTGGGGGAGCCCGTGGACATGGCGGCGCTGCTGGGCGCCGGCAACACCAGCGTCACGCTCGAGTGCGACCTGGAGTGCCAGGTGGAAGATCGCAACAGGCGGCTTGCCATTGGCCTTCAGATCCGCAACCCGGATCTCTCCTCCAAGCTGGCACCAAAGTACTCCGATACGCTCAAACAGATGGCTGTGCGTGAGGAGAACTTTGCGCAGCGCGTGCACGACCAACTGACGCAGCTGGTGTCGCTGTCACGCGAATCCAAGCAGCGCACCCGCTCCCACTCCTTCACGCCCATGAGCCGCCAGCGCCGCCAGTTCGTTCACGAGCTATGCACGCACTTCGGCTGCGATAGCGCGGCATACGACGCCGAGCCGTATCGCAACATCGTGGCGACGGCCTTCAAGGACAAGTCCTGGCTGCCGGCGCTGAGCGTGCTGGAGGTGCTGCGCCGGGAGAAAGGGCAGCGCAAGGTGCCGGGCCCTCAGGTGCTGCCCTCCAGTGCCCCGCGCTCCTCCGCCTGGGCCACGCTGGGCCCCGCGCCCCCCAACCCCTCTGTCTCTGCAGCCCCCGTAGCTCTGGCGCCCCCCGAGCCACCAGCACGCCCCCGCATTGACTACTTCGACCTGCCGCCTGAAGACTAG
Protein Sequence: MANWNNNGYYSEGWQGEQQRYPPGAPSGQYVGFNDFLHQFQQLPANYPAYPPPAMGAPFQPAPVMMPVPGPSYPPGGYIANNSQTEYPSPSNNYDKENTSNNSSSNHFSKHNRRNDKKKPLQQEESGNAGAREEVTSHSKLVATAEEFIPQSARTIPAQEPARGEAITLTPSIPASDTSRNQARSGGSQKWKSKNTPKEAINSTNWRSRNEEEPWEAESTASVEQTSFTVYNSNRPPSQEGGPSRASPTTQGPRQRRDNTNRNSNVNEKGRFNQADNRNNVNNTTSETDRSKSKMSFNVNESFGRSNQVVAEEGRNGRGDRRQQDDRGQQEDRGQQEDREQDNKRGSENRRGAQENKGRRGGDNRRADNRTVDDTRRGDNKAGGEDIRNGNNRRGGDTRKPEDRRAVRDNRTEENWGDRKWGDDRRGGENRRMEDGRRRGRENPRGEENWPSGEDRRYGDDRERRYGDDRDRRYGDDRKVNDRRGDDRRVKGKELNNKKITPRDGLQGVGVGQRERLAEQLDRGELECLVCCDRVRQTDYVWACCNCYHVLHLKCVQKWASTSIVEGQWRCPACQNKERGVPSEYRCFCGARRQPEWVRGTAAHSCGEPCGGRRACATHACTLPCHPGPCPTCDATSRQHCECGATSQLRKCSLKTPLLCGGECGKPLACGAHTCKEKCHAEACPPCPLKVEQTCYCPLATTRSPDCDASTVGVFGFSCGAECGRKKDCGNHTCSDPCHPGPCQPCALAPKAVTRCPCSQTLLKQVRTSCLDPVPVCDQLCSYPLNCGPPEEPHCCQSSCHHGPCPPCPGKTPVSCRCGSKVQELACVVLDAERHTVRCGKKCTKKHSCGRHKCQERCCVDAEHRCPLPCTRTLSCGLHRCEDTCHRGHCQPCWRTSFEEMRCRCGAAVHYPPVPCGTRAPECTLPCREVRACGHDALHACHPAPSPCPPCVVLTQRYCHGRHKMRKTIPCHQEDFSCGLPCGKDLPCGKHKCVETCHRGPCPTVCSQRCSAPRPGCGHACAAPCGHAAPCPSTSPCRCVVPATCPCGRRSLQRPCHEQRAILRRVTALPGPLGEPVDMAALLGAGNTSVTLECDLECQVEDRNRRLAIGLQIRNPDLSSKLAPKYSDTLKQMAVREENFAQRVHDQLTQLVSLSRESKQRTRSHSFTPMSRQRRQFVHELCTHFGCDSAAYDAEPYRNIVATAFKDKSWLPALSVLEVLRREKGQRKVPGPQVLPSSAPRSSAWATLGPAPPNPSVSAAPVALAPPEPPARPRIDYFDLPPED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -