Laur017527.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- ZNF131
- Assembly
- GCA_951813805.1
- Location
- OX638404.1:32688680-32690269[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.045 2.7 9.3 1.6 1 21 146 166 146 167 0.94 2 9 0.12 7 8.0 1.6 2 23 236 257 235 257 0.96 3 9 0.44 26 6.1 0.7 2 23 264 285 263 285 0.95 4 9 0.45 27 6.1 0.4 6 23 296 314 294 314 0.85 5 9 0.29 17 6.7 1.4 2 23 348 370 347 370 0.95 6 9 1.7e-05 0.001 20.0 0.3 2 20 377 395 376 397 0.95 7 9 0.0001 0.0062 17.6 0.3 2 23 405 427 404 427 0.97 8 9 0.079 4.7 8.5 0.4 1 23 434 456 434 456 0.97 9 9 0.14 8.3 7.7 2.7 1 23 462 484 462 484 0.92
Sequence Information
- Coding Sequence
- atgtgtaacGATTGCAAAGTGTCCATTTGCCCCTCGGACAAAGCTCTCAATCCGACCAACGTCATATCTGGTCCGACGAGCTCGGTCCTCGAAGCCACTTTCCCAAACCAATTGCCCATCAAGAAAACACTCTCCACTGGCATCCTTTCTTCGGACAGCGACAACTCCATGCCGGCCAGTATTCCCGACACCGAGCCCTTCTATTCCGAAGTTCCTATCATCTGGCCAGATGTTCCCAGGCGCAAACTGAAGACCAAGAAACGTTCCAAAAAGAGTTCCAAAACTTGTAAAAAGTTgggaagaaagaaaaagaagaataagGATTTATCTTTTATTCCGGAGAAAGGAACGCCCAGTTCAAATGCGCTGCTCAAAtatgaaagtaaaataaatgcacTCTTTGAAGAGATGCCTCTGAAGAGTTTTAAAAAGAACTACACCTGCCGAGTATGCGGAGCCGAGTATAGAAGCTTGCTTTGTCTTAAGAGACACAACAGAAAATGCACAGCGGCGCGGAAACTGCTCTTTGTGCCCACCACACACGCCTGCGTGCTCTGTAAAGCCAAATGCACCAGTTTCAAGGAAATTAGCCAACACCTCTACAACACCCACGTCCCTCACTTGAAATGTAATCATTGCGACCTGTTGCTCTGCACGGGAATAGAAAGAACCGAGCACATGAAGTTGAGTCACGTGGAATTTTCTCAGTGCAGGTTCTGTTCCAAGATGCTCAATTCCAACGACGAGAAGAAGAAACACATTTCCTGGCATCTGACTGAGGAATCTGTCAAATGCGACACTTGCAACAGAATGTACCTGGGCATACGCAAGCTGAAGATCCACCAGCGGGAACACACCAAGAAGCTGAAGAGGACCAAGGGGCTCTGCGGCCAGTGCGGGAAGGAAGTCAACGACCTTACCCGCCATCTGAAGAGAACTCACCGCAAGAAGTTATGTCTCACTTGTGGGAAACTGCTGTCGCACAGCGTATACAACTATCACAAGAATGTTCTTCACAAGAACTACCTAAATACTGCCGTTCAATGTTCCGCCTGCGGGAAGATGCAAAAAAGCTACAAACATTTAGACCAGCACCGCAGAGCCGTCCACGAGAAGCATCTTTACGTCAAGTGTCCCACTTGCCCCAAGAAGTTCCCCTACCCGTACCACCTGAGGAAGCACCTAGAGGCGCGCAAGTGCGGCATCCTGACCACCTGCGAGACGTGCGGAGAGGCCTTCAAGTCAGACTACCAGCTGGTACTGCACTTGCGCAAGATGCACGGCAAGGTGGTGCGCCGCTTCGCGTGCCAGTACTGCCCCGACACATTCTTCCGCAACGACGCGCGCCTCTCGCACGAACGCATCCACACGGGCGAGCGCCCCTACAGCTGCACCACGTGCGGCCAGCGCTTCCGCGTGCTCATCGACTGCAAGCGCCACGAGGACCGCCACGCCGGCAAGGTGGTGCCCAAGCAGCCTAAGAAGGCGAGGCAGCAAGCCCCGCGTGACTCCGTCCTTGAGGAGGTCAACGAAGACTTGGGATACTTTGTGGAGTTTGAACCCAACAAGAAATTAGATGATACGGATTAG
- Protein Sequence
- MCNDCKVSICPSDKALNPTNVISGPTSSVLEATFPNQLPIKKTLSTGILSSDSDNSMPASIPDTEPFYSEVPIIWPDVPRRKLKTKKRSKKSSKTCKKLGRKKKKNKDLSFIPEKGTPSSNALLKYESKINALFEEMPLKSFKKNYTCRVCGAEYRSLLCLKRHNRKCTAARKLLFVPTTHACVLCKAKCTSFKEISQHLYNTHVPHLKCNHCDLLLCTGIERTEHMKLSHVEFSQCRFCSKMLNSNDEKKKHISWHLTEESVKCDTCNRMYLGIRKLKIHQREHTKKLKRTKGLCGQCGKEVNDLTRHLKRTHRKKLCLTCGKLLSHSVYNYHKNVLHKNYLNTAVQCSACGKMQKSYKHLDQHRRAVHEKHLYVKCPTCPKKFPYPYHLRKHLEARKCGILTTCETCGEAFKSDYQLVLHLRKMHGKVVRRFACQYCPDTFFRNDARLSHERIHTGERPYSCTTCGQRFRVLIDCKRHEDRHAGKVVPKQPKKARQQAPRDSVLEEVNEDLGYFVEFEPNKKLDDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -