Laur015890.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- rplA
- Assembly
- GCA_951813805.1
- Location
- OX638403.1:9188721-9223497[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 1.5 88 4.5 0.8 3 23 140 161 138 161 0.91 2 26 1.4 80 4.6 1.6 1 23 196 220 196 220 0.89 3 26 0.86 51 5.2 1.4 1 23 291 313 291 314 0.93 4 26 0.0026 0.16 13.2 1.2 1 23 318 341 318 341 0.97 5 26 7.8 4.6e+02 2.2 0.5 3 23 482 503 481 503 0.93 6 26 0.11 6.7 8.0 3.0 1 23 538 561 538 561 0.98 7 26 0.083 4.9 8.4 3.0 1 23 687 710 687 710 0.97 8 26 0.43 26 6.2 1.8 1 20 720 739 720 744 0.90 9 26 0.32 19 6.6 4.5 1 23 868 890 868 890 0.96 10 26 0.023 1.4 10.2 0.4 2 21 897 916 896 917 0.95 11 26 1 59 5.0 2.2 3 23 1028 1049 1027 1049 0.94 12 26 0.25 15 6.9 3.2 3 23 1100 1121 1099 1121 0.94 13 26 0.24 14 7.0 4.4 1 23 1128 1150 1128 1150 0.96 14 26 0.37 22 6.4 4.5 1 23 1156 1179 1156 1179 0.97 15 26 0.68 40 5.6 0.1 2 22 1192 1212 1191 1212 0.93 16 26 4.3 2.5e+02 3.1 1.2 3 19 1229 1245 1227 1247 0.92 17 26 0.23 13 7.1 0.1 1 19 1262 1280 1262 1282 0.96 18 26 1.3 75 4.7 8.7 1 23 1396 1418 1396 1418 0.98 19 26 0.0057 0.34 12.1 2.5 1 23 1422 1444 1422 1445 0.96 20 26 0.0078 0.46 11.7 3.2 1 23 1452 1475 1452 1475 0.96 21 26 0.13 7.8 7.8 3.0 1 23 1482 1504 1482 1504 0.98 22 26 0.00022 0.013 16.5 3.5 1 23 1510 1532 1510 1532 0.97 23 26 3.3e-05 0.0019 19.1 8.1 1 23 1541 1563 1541 1563 0.96 24 26 3.5 2e+02 3.3 5.6 2 23 1569 1590 1568 1590 0.96 25 26 0.0057 0.34 12.1 1.0 1 23 1595 1617 1595 1617 0.96 26 26 0.00013 0.0079 17.2 3.0 1 23 1623 1646 1623 1646 0.96
Sequence Information
- Coding Sequence
- ATGAATTGCTTCAACGAAAACCGAATACAAAAACTAGAGATCGATGTACCTAATATCGAACAGCAACTTCCAACTGatcACCTAAACCCGGACATCACAGGTACATTCGGTCTCTTCAGAGAATGGGCGATGCTCTCAGGAAAAATCACCCAGTTCATGAACAACCAGAATATTCTATATTCTGAAAAAGAAATAGAATACTCTGAACCACAAAAATTGGCCGACGACAGTTTTGTTTACGCCATCGTCGCCACTGAAAATGTTGATTTAGATCTTCAATCTAAAAAAATCAACTCTACAACCACAGATAAATTACTCAgcattgatgatttttttgttttaaaaagtcaCCTCTCTGAGAATGCGGACAATGGAGTCAAGTCAAACAACAATTGGGTGTCGCGCTGTGGCATCTTTTGCAGCGCGTGTAAAAAGAAGTTTCCCAATAAGTTGGATTTTGACAGCCATTATTTAGAGACGCATGACCGCAGGGAGATACTCTACACTTGTTCACTCTGCAACGAGGAAGATGTCAATTACAATCGATTCCGTAACCATTGCTACCGCCATTTCGCCAAGGGCAGATTCCAatgCAGCCAGTGCCCGACAATTCGTTTCACCCAGGATAAACATTTGCAAGCACACAACATATTGTTTCATTCTGAAAACCCAACGGAGCCACTGGTTCCTCAACCGCAGAAAGCTGATCTGGTTCCCAAACCGCCGGGCCTGAAGATCAGTCCTGATGCGGATCCCTCAGCCCTTGGCAACAAGACAGATATATTTTGCAGCAAATGCAAGCAAAAATACATTGGCAAAAAATTCTtcgataaacattttaaaatgaaacattCGCATTCTGAAATTATTTACTCTTGTACAATTTGCAAAGATGCTTTCGAAGATTTTGATGCCTTTAAAAATCACAGCGGCAGTCATCACGATTATAAATTTagTTGCAGCAACTGCTCCGCCAAATTTAAGAAAAAGGTTTTACTTTCTGAACACATGAAATCAGTCCATTACCAGGGAACTGAGCCTGACAGTTGGTTTtctaaattgaatattaaagaTTGCGCAATGCAAAGCGACCAATCTGCATTTgaagatacaaataatatagtaCAAAAGAGTAATTCCAATgttgatataaaaaattgtacaaataatatagataacTGTGTTAAATTGGAGAATATTAGTGATATATTTAGCTCGGATGAGAATCAAAATATAGatttacaaatgaaaaatataactaGGCCAGGATTCTACAAGAAAGACATGAAGGAACACACATTCGCTATTAAAGTTGAAAAAGAGCGCTGGGCTTGCTCCCAGTCTGTAATATCGGAGAGCGACATCTCTGATCTGATATCGAATGTAGAAGACGTGGATGGTTTGGACGAAATCAACAATTGGAGAAACCACATTGGGATATTGTGTGGACAATGCAGTCAGAAGTTTTCCGCTAAGAATATGTTCGATGACCACTACCAGGAGGAACATAAGATGACGGTGATTATCTACACGTGTCCGTTGTGCAAGAGCGAATATGAGAACTACAACCGCTTCCGTGACCATTGCTACAGACACTTCATCAAAGGAAGATTCAAgtGCTGCTACTGTTCAAACCGGTTCCCGAAACTCAACCGTCTGTCAGCTCACATTCGATCCGTCCACCCGGAGTCCTACCAGGCAGAAGGGCTGCTATTAGACCAAATAGTGGACAACAAGAGTGTCTCGGGCAGCGTGGACTTGAACTGGCGCCCCCCGTCCATACAGTCCAACTACAGTAGCGACATAAAGTCAGAGTGCCAATCGGTCAAAACTGAAGACTTCAAGGGACACAAGCACTTAAACAGTTGGCTCACGCGCTACGGTATATTCTGCTGCAAGTGCAAGATGAAATTCCTCGACAAAGCTTCCTTTCAATCACACTATCAGGAAAAACATTCAGAGACCAACATTATCTACACTTGTTCGCTTTGCAGCCAAGAATACGATAGTTACAAGTGTTTTAGTAACCATTGTCGCCGTCATTTCAACAGGGATAGTTACAAATGCAAGTTGTGCTGCCGCAGCTTTGCCAAGTACCGAAGCCTATCAGCCCACATAAAAGAAATTCACTCAGCAAACAGTCAAGATATAATCAGCTTCGTTTGCAAGCTTTGCAATAAGGTGTATCTCACTCAGGATCGCCTCAACCAGCACACCGTCTCCTGCGGCCATTCCGACGGCAGCAGCATCGCCAGTTCCCGCAAGAACTCGCCGACCAAATCAGAAGCATCGCGGGGaagttccatagaaaattacaCAGACTCTTCAAACAGCACGGCCAAAAGCGATTTCTTTCTACTGCACAGTGATGATAAGAATTCTTCCATCTTATCGTCGAGTTGCGACGTTCTCACTGATCGCAGCATAGAAATATACAATTCTAAATGTAACGCTGATAAGATACCTAGTGAGAATGACAGGAAGAGCTTTAATTGGCTTCACCTGCACGGCATTCTGTGCGTTAAATGCAAGCAGAAGTTCCCCGGGAGGAAGTTTATAGACGCACACTTTCTGAAGGTTCACCCGCTAAATGAGGTGACCTACACATGCTCCGTATGCACTGAACAGTTCAAGCATTATCGCAGTTTCCTCAGTCATGCTTACCGTCATTTTGTCAGGGGGAGAATTAAgtgCCAATACTGCCCATTACTATTTTCACACAACAATCAATACCAAGCTCACTTGAAAGCTTTTGCCACAGACAAAAGGCACGTTGCGGATGCCGCGCAAACCACCATTAACCTGGATGAACAAAATGATAAAATGGCAACACCGGAATGTTTACCAGCCGACGAGGGTGAAGATAATATCTTTGCTGATGAAAATCACAACAATTGCATCAACGGAAATGACTTTAACATCAGTTTTTACAATGCAGACTTAATAAAGATCAAGAAAGTCAATGAGATGGATTGCATTTCTCAAGAAGgggaaaaatttacaaaaaaggaCAACAATGAAGAAGAAATCCCGGAAATCAAAAATTCTGATGAACTTAAAAAAAGTAGTTTAGAAATACTCTGTCATTTGTGTAAAGAGAAATATCCCGATAAGTCCGAATTTGATGAACACTTCAATAATAAACATTCGGGATGGCACCCTATTTACGCATGCCCCACGTGTGAAAGAATTGACCATATTTACACCAATTTCACTCAACACAAATGCAATAGGTTTAATCTTTTCAgaagCTATCATCGCACCAAGATTGACGATTGGATGAGATACGCCATCCTCTGCAGGAGATGCAACCAAAAGTTCATAAACAAGTATTTCTTCCGGAAGCATTATCAGGAGAGTCACTCTAAATGCAAACCTGTCTATTCCTGCTCTTTGTGCCAAAAGGATTGCGAAAATTATGAGAACTTTCGTAACCACCGTTACCTGCATTATGTCAAGGGAAAGTTCAAGTGCCGTTTTTGCCCAATGAGCTTTGCAAAGTATTGTAGGCTGGTGAGACATCAAGAAAAAACTCACCCAGACACCAAACAGCCCGAAAGAACAAGTTCCCTATCTTGTTCAACTTGTTATCAAATATTCAGCGCAGATTCCGATTTAAACGTCCATCTCCTCACATGTCCATCGCAGAATTCTCTAGTCTTCGAAAGAAAAGAAACAATCAATTGCGCTCTATGCGGAGAAGACTTCAAACACTTTGTCGATTACCAGGATCACAATTGTTTCGAAATAAAGCACGAGATGTGTTTGAGTCCAGGCGACGTGTTTTCATGCTGGACATGCGATGAACTGTTTAGCTCCATCGATCAGTTGCAGATGCATAGCGCGTTATGCTTCCAAAACCACAATGAAGCTAATGGACAAGCGAGCGTTACTTTCAGTCTAACCGAAGGggaacataatatatcatttgaAACCAAGACAAAGTCAAGTTTAAACCTGGATGGAAGCCAAAGCGCCTCGATCCATCAATATCCCAATGAACAGCATAAAGGTTATGAAGAGTTCCTCTCTGAGTATCCGGGGGACGGTACAGCTTCGAGCTTAAATAATTCCGGCAGTCGGGATGGTAACAGGATCAAGTGCGGCAAGTGCAAGTTGCTGTTTTCCGGCAAGGTGGTATTCGATCGGCACTTGGCGCAGGAGCACAGTGGTGGTGAGGTGGTGTACACTTGCGCCGTGTGCGACCGTGAGTATAAAACGTACCACAGTTTCCACAATCACCACTATCGACATATGGGCAGATATAAGTGCAGCATGTGCCCCAGTCGCTTCTCCCTCCGCAGCGGCCTGTCATTGCACATGACACGCCACCACTGCTCCGAAGGTCGGCAGCACCCGTGCCACCTGTGCGACAAGGCCTACCATACGGAGCCCGGCCTCAAGTTGCACATCCGCTCTCGCCACACCGACTCACACTGCACTCACACCTGCAAGCTGTGTGGCATTGTCCTGCATTCAAAAAATGGATTTCTTCTCCACATGAAGTCCCACAAAGCGGGAATGCAGTTCATGTGCCACGTGTGCGGCCAACACTTTAAACAGAAGGCCAACATGATCCAGCACCTGCAGCTGCACAACAGTCACCGCCTGCGCCAGAGTCACCCCTGTCACCACTGCCCTAAGAGCTTCAGCCGCAAATCCCACCTCGCCAAGCACTTGGGGCGCCACACGCAGAGTAGGAAGCAGTGCCACGTCTGCAAGCGATGGTACAGGAACGAGTACTGCCTAAAAAAGCATTCGTTGGTCCATGTGGAACGCCCCTACGCATGCAACACCTGCGGCAAGAGATTCCTTTCTTCCGCCAAGCTGCGTCAACACACCTACATCCACACGGGACAGAAACCCCACCAGTGCGCCTATTGCTCCAAGGCCTTCAACGACTCCTCCAACTTGTTAAAGCATAATAAAAGGCAGCATAAACGGGAAATGaaaaaagtattgattttaGAACCAAAAAACGTCACGGATGAAGATCCTAGTTTATACGATAAGAATTGGATGCAGCCAGAGACTACTGCATTAGATGATTCGATACAGTCTGTGATAATTACAtctgaaaattttaaacattctgtgataaataaaaaaagtaatgagGTTAAGAGTAGAAATAAAGATATTAGATGTAATAAGTTGAGGACGGAATGGCCTCCCCAACTAGCCGTTCATCTGCGCATTAGCGATGGTGAATGCGATGATAGTATACGCTTGTACAGTGAAATAATGGAAAACACATTCTCCGTGGCCGACCGCTACTACCCCGACACCGGGGGAGATCTGCGACTCGGCCAAGATGATATCCTACCTCGTGACGATCTGCCAGTCGTCAACTTGCGCGATATCACTCTGCATATCCCTAACAGAAACAGACGCTTCGACCAAGAGAGAGTCGAAACACAAGAAAATACAGAGAGTTCTAGCGACAAACTGTACATACCACAGCTTCTCAGCCCGATAGACTCGCTTCCCACTTATTGGTCGGGCGGAATCCCAACCGATGAGGAAGCGAACTCACTACTGAACCAACCGGTATCCAGCAaccaaattgaattatttcaaaatgaaataatgaaagagcTTGCGGAAAATGTAGACTTCCTCGAAGGTGAGGAATCGTCCCCAAATATAGATGTTAATGACGAAATTGAGACTGAGGAGATTTTAAGTAGGAATATAAGTATTCAAGACCAGGAATCAAGTCACTGCCATATGGAAAAAGAAGATGAGAACAATCGTGCTTTTCATCTGTATTCTAAACACCTGGACATGGTGGTTCCTTTTACTGCCGACACTTTGTCCACAATGGACCAACCTGTCCCGGGACTGGGATTGTTCCAGGAACCACACATATCACCGCAAACCCGATTGGATGCTAACGATCCAATGTTACATTCCACTGAACATTTATCAGGTAATAACGCTACTAAACAAAGTGCCGTGAACAGAGACGTTAGAGAGTTAATAGAGTTCCCGTGGGGGGATGCAATCAATGACATACTTACCATTAATaggtTACTTAATGTCTCAGCTGTCGATTTCGCTGCCAGAAAGGGAACAAGGGAGAAagctaaaaagaaaaaggtGAAAGTTGAAATCAAAAAAGTTGGATTTATCCCGCACaatcaaagaaataaaaaggtTCAACATGTAAGGATAATAAGACCATTAAATGACTCTCTGAAGCTTGTGTCACCAGATGATGTGTGGCCccttaaatattacaaatggaAGGTTTACTCTGCAGCGGAAGCTATCAACTGTTTCAAAGAAAGCCATCATCCAACTATGTTCAATCTACCTAATTCCTTGTTGAATGTTTATATTGAACTAAATATGGCATTGACCAAGAAGaCAAAGTTTGTGGACAACTTCAGCCGAATTTGTTTGGTTCCTCACGGGTTCGAACGCAAGGAGAAAAGAAGCATCCTGGTGTTCTGCAAGGAGCAGGAGAAGCACCACGCCCTTATTGATGCCGGTGCCACTTTTGTCGGTGGCGTGGAGTTGGTGAAGAAAATACAGaatGGTGATCTCAATATCATGGATTATGACTATGTCCTTGCACACCCCAACATCTTACTGGACATTGTTCCTGTCAGAGGAATTCTGAAGAAGAAATTTCCAAATCCTAGAAACGGATCTATAGATGCAGATCTTCTCAAAATTTTGCGAATGCATATTGATGGTGTTGAGTACAAAGCAACCAAACATGAACAAGATCAAACTTTTGGAACCATTACTACGGCCATTGGAAGATTGACAATGGAGACACAACAGTTGGAGGAAAACTTAGTGTCTTTACTAAAAGATATTGATTCTATGAGGCCGAAGCGAGATGGCCTATTTGTAAGAAGagtATTCTTGTCAAGTGAACCCTGCACCCAGCAATACAAAATTGATCCATTTGTGTATATTGACTCCGGAGTGAAAGAAAATGCTGATGCTAAAGTTGAAGACAGCGACTCTGAGGATGATGAGAAGGCAGAATTGGAAAAGAGTGCCCAAATGTAG
- Protein Sequence
- MNCFNENRIQKLEIDVPNIEQQLPTDHLNPDITGTFGLFREWAMLSGKITQFMNNQNILYSEKEIEYSEPQKLADDSFVYAIVATENVDLDLQSKKINSTTTDKLLSIDDFFVLKSHLSENADNGVKSNNNWVSRCGIFCSACKKKFPNKLDFDSHYLETHDRREILYTCSLCNEEDVNYNRFRNHCYRHFAKGRFQCSQCPTIRFTQDKHLQAHNILFHSENPTEPLVPQPQKADLVPKPPGLKISPDADPSALGNKTDIFCSKCKQKYIGKKFFDKHFKMKHSHSEIIYSCTICKDAFEDFDAFKNHSGSHHDYKFSCSNCSAKFKKKVLLSEHMKSVHYQGTEPDSWFSKLNIKDCAMQSDQSAFEDTNNIVQKSNSNVDIKNCTNNIDNCVKLENISDIFSSDENQNIDLQMKNITRPGFYKKDMKEHTFAIKVEKERWACSQSVISESDISDLISNVEDVDGLDEINNWRNHIGILCGQCSQKFSAKNMFDDHYQEEHKMTVIIYTCPLCKSEYENYNRFRDHCYRHFIKGRFKCCYCSNRFPKLNRLSAHIRSVHPESYQAEGLLLDQIVDNKSVSGSVDLNWRPPSIQSNYSSDIKSECQSVKTEDFKGHKHLNSWLTRYGIFCCKCKMKFLDKASFQSHYQEKHSETNIIYTCSLCSQEYDSYKCFSNHCRRHFNRDSYKCKLCCRSFAKYRSLSAHIKEIHSANSQDIISFVCKLCNKVYLTQDRLNQHTVSCGHSDGSSIASSRKNSPTKSEASRGSSIENYTDSSNSTAKSDFFLLHSDDKNSSILSSSCDVLTDRSIEIYNSKCNADKIPSENDRKSFNWLHLHGILCVKCKQKFPGRKFIDAHFLKVHPLNEVTYTCSVCTEQFKHYRSFLSHAYRHFVRGRIKCQYCPLLFSHNNQYQAHLKAFATDKRHVADAAQTTINLDEQNDKMATPECLPADEGEDNIFADENHNNCINGNDFNISFYNADLIKIKKVNEMDCISQEGEKFTKKDNNEEEIPEIKNSDELKKSSLEILCHLCKEKYPDKSEFDEHFNNKHSGWHPIYACPTCERIDHIYTNFTQHKCNRFNLFRSYHRTKIDDWMRYAILCRRCNQKFINKYFFRKHYQESHSKCKPVYSCSLCQKDCENYENFRNHRYLHYVKGKFKCRFCPMSFAKYCRLVRHQEKTHPDTKQPERTSSLSCSTCYQIFSADSDLNVHLLTCPSQNSLVFERKETINCALCGEDFKHFVDYQDHNCFEIKHEMCLSPGDVFSCWTCDELFSSIDQLQMHSALCFQNHNEANGQASVTFSLTEGEHNISFETKTKSSLNLDGSQSASIHQYPNEQHKGYEEFLSEYPGDGTASSLNNSGSRDGNRIKCGKCKLLFSGKVVFDRHLAQEHSGGEVVYTCAVCDREYKTYHSFHNHHYRHMGRYKCSMCPSRFSLRSGLSLHMTRHHCSEGRQHPCHLCDKAYHTEPGLKLHIRSRHTDSHCTHTCKLCGIVLHSKNGFLLHMKSHKAGMQFMCHVCGQHFKQKANMIQHLQLHNSHRLRQSHPCHHCPKSFSRKSHLAKHLGRHTQSRKQCHVCKRWYRNEYCLKKHSLVHVERPYACNTCGKRFLSSAKLRQHTYIHTGQKPHQCAYCSKAFNDSSNLLKHNKRQHKREMKKVLILEPKNVTDEDPSLYDKNWMQPETTALDDSIQSVIITSENFKHSVINKKSNEVKSRNKDIRCNKLRTEWPPQLAVHLRISDGECDDSIRLYSEIMENTFSVADRYYPDTGGDLRLGQDDILPRDDLPVVNLRDITLHIPNRNRRFDQERVETQENTESSSDKLYIPQLLSPIDSLPTYWSGGIPTDEEANSLLNQPVSSNQIELFQNEIMKELAENVDFLEGEESSPNIDVNDEIETEEILSRNISIQDQESSHCHMEKEDENNRAFHLYSKHLDMVVPFTADTLSTMDQPVPGLGLFQEPHISPQTRLDANDPMLHSTEHLSGNNATKQSAVNRDVRELIEFPWGDAINDILTINRLLNVSAVDFAARKGTREKAKKKKVKVEIKKVGFIPHNQRNKKVQHVRIIRPLNDSLKLVSPDDVWPLKYYKWKVYSAAEAINCFKESHHPTMFNLPNSLLNVYIELNMALTKKTKFVDNFSRICLVPHGFERKEKRSILVFCKEQEKHHALIDAGATFVGGVELVKKIQNGDLNIMDYDYVLAHPNILLDIVPVRGILKKKFPNPRNGSIDADLLKILRMHIDGVEYKATKHEQDQTFGTITTAIGRLTMETQQLEENLVSLLKDIDSMRPKRDGLFVRRVFLSSEPCTQQYKIDPFVYIDSGVKENADAKVEDSDSEDDEKAELEKSAQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -