Basic Information

Insect: Limnephilus auricula
Gene Symbol: -
Assembly: GCA_951813805.1
Location: OX638392.1:30508761-30520058[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.7 41 5.5 4.4 1 23 92 115 92 115 0.96

2 20 0.069 4.1 8.7 3.8 1 23 122 145 122 145 0.97

3 20 0.037 2.2 9.5 0.3 2 23 210 232 209 232 0.96

4 20 4.6 2.7e+02 3.0 2.8 1 23 238 260 238 260 0.97

5 20 0.0021 0.12 13.5 0.5 2 23 266 287 265 287 0.97

6 20 1.1 65 4.9 2.5 2 21 593 612 592 613 0.94

7 20 0.51 30 6.0 0.9 2 23 871 892 870 892 0.97

8 20 0.59 35 5.7 0.9 3 23 986 1006 985 1006 0.97

9 20 0.4 24 6.3 0.4 1 20 1014 1033 1014 1036 0.95

10 20 0.026 1.5 10.0 2.1 1 23 1069 1091 1069 1091 0.96

11 20 0.015 0.86 10.8 4.9 1 23 1098 1120 1098 1120 0.99

12 20 2.2 1.3e+02 4.0 1.2 2 23 1195 1216 1194 1216 0.94

13 20 10 5.9e+02 1.9 2.8 1 23 1283 1305 1283 1305 0.92

14 20 0.012 0.73 11.0 5.9 1 23 1311 1333 1311 1333 0.97

15 20 0.014 0.82 10.9 1.6 1 23 1412 1434 1412 1434 0.97

16 20 0.00015 0.0088 17.1 3.1 1 23 1440 1462 1440 1462 0.98

17 20 0.0089 0.53 11.5 2.6 1 23 1552 1574 1552 1574 0.97

18 20 0.00026 0.015 16.3 1.4 1 23 1580 1602 1580 1602 0.99

19 20 0.3 18 6.7 0.6 1 23 1683 1705 1683 1705 0.98

20 20 0.013 0.79 10.9 0.3 1 23 1713 1735 1713 1735 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.7	41	5.5	4.4	1	23	92	115	92	115	0.96
2	20	0.069	4.1	8.7	3.8	1	23	122	145	122	145	0.97
3	20	0.037	2.2	9.5	0.3	2	23	210	232	209	232	0.96
4	20	4.6	2.7e+02	3.0	2.8	1	23	238	260	238	260	0.97
5	20	0.0021	0.12	13.5	0.5	2	23	266	287	265	287	0.97
6	20	1.1	65	4.9	2.5	2	21	593	612	592	613	0.94
7	20	0.51	30	6.0	0.9	2	23	871	892	870	892	0.97
8	20	0.59	35	5.7	0.9	3	23	986	1006	985	1006	0.97
9	20	0.4	24	6.3	0.4	1	20	1014	1033	1014	1036	0.95
10	20	0.026	1.5	10.0	2.1	1	23	1069	1091	1069	1091	0.96
11	20	0.015	0.86	10.8	4.9	1	23	1098	1120	1098	1120	0.99
12	20	2.2	1.3e+02	4.0	1.2	2	23	1195	1216	1194	1216	0.94
13	20	10	5.9e+02	1.9	2.8	1	23	1283	1305	1283	1305	0.92
14	20	0.012	0.73	11.0	5.9	1	23	1311	1333	1311	1333	0.97
15	20	0.014	0.82	10.9	1.6	1	23	1412	1434	1412	1434	0.97
16	20	0.00015	0.0088	17.1	3.1	1	23	1440	1462	1440	1462	0.98
17	20	0.0089	0.53	11.5	2.6	1	23	1552	1574	1552	1574	0.97
18	20	0.00026	0.015	16.3	1.4	1	23	1580	1602	1580	1602	0.99
19	20	0.3	18	6.7	0.6	1	23	1683	1705	1683	1705	0.98
20	20	0.013	0.79	10.9	0.3	1	23	1713	1735	1713	1735	0.97

Sequence Information

Coding Sequence: ATGGCCTCCCCTTCTATGGTCCAACGATCGGGTGACACACTGATTGTGAGGAGTGTAGTGAGCGGAGACCGACTGTTCATGGATATCAGTCAAACTCCTATGCTGAGTGCCGCACTGGCAATACAGGGGGTCATTCCAGCCCCCGTGCTCACCCTGCCTCTGCAGCCCCTCCAGCCTATCCAACCTCTGCCTGCACCCGTGTTCACTCAAGTGGAGGAAGGGTCACCGACCCTGTCTGATGGGGATCTCCCTCAATGTAAAATTAAGAGAAACTATAACTGTGTTCATTGCAATTACTTTACACAAAATCCTAGACATTTTCTAACTCATTTGCGTGACGTTCATGacgaaaaagtaaaaatctacGACTGCCCGCATTGTTTGTACGCTTCCAAACACTTTCAAAAACTTTTGAGACATATGAAAATGGTCCATGGTACTTCCAAAGGAGTGGAGCCCCCGGCCAGCAACAAGCGCAAGGTCCGGGAACCCACTCCGGAACCGGGGCCCAGACCCGTGCTGTCGGAAGAGCTGGACATGGATGAGTTGATAGAAAAGGAAGAACCTCCCGTCCCCCCTCCTGAACCCGTTGTCATCCCTCCCGTGAAATCTACCCGTGGTAACCTAAAGTGTTCCTTGTGTCCTTTCACAACTAACGTAGCGGGTCTCTTGACGAAGCACGAGCGCAAAGAACACATTAAAACGAAGTTTTTCCCTTGTGGCAAGTGTAATTACGTGACTCATATAAAAGCGCGATTCACAAAACATGTTAAATACCATTCCATGCCCATGATAAAGTGTGAAGTGTGCGATTTCCGTACTCCGTACAAGTGGAACCTGGATCGCCACATGAAGAATCACGGCGGAACTGGCGCCTTTTGCTGCTCCGTGTGCAACTTCACGGCGGACATCAAGCAGAGCCTCACGGTACACGAGATGAACCATCACGTGCCCCCGGCCGGGCAGCCCATCGTCGGGATTCCAAGTGGTCGGCGCCGCAACAAGGTGGGCGGCAGTGACATGCTCAACGCTCAAAGTGGCCTGTCCGCCAGCCGCGCCCCTGAACATGATACCAGCACTGGGGACTCCATACAGAGTGAATTCACAGACATGGCAATGATGACAGATAATAGCAATGACAGACATAGTTCCAGCAGTAAAGCCGATGGGCAGGAGATGGACACAAATATTGATTCTCTTCAGGATGCCAATGAGTTCATAAACTACGATATGTTTCCCAAAGCGGACTTATCGATCAAACCTAGCCTTTGTGAAGAACTCAATTTGAAAGCTCAATCTAAAAAGGTTCCCCGTCCCATTCCCAATCTCATTCCGCTTCATTTACAAGCGGGTAACCAGCCGCTAAAGAATTGTCAGCCGACAAGCGCACCGTTGAATTTGACAACAAtccaaaaaagtttttctgTGAAATCGGATGATGTGAAGTACATCTCCTCGTCAGCAAATGTGTCAGATCATTATGATGATAGCAATGATCAGGGTTGTGACAATATGTCTACAAGAGGCAGCGATGAATCCTCCCAACAATCCATTCAACTTTCCACGCAGACTATCTTCAAGAAGAAAAATGCGTCATTTTTCGATAAATTGAAAGAAAAACTGTTGACAACTTCTGCAGAAAGTGGTGACTTGTCCTGTAAAGATTGCGGCCATTTATCTAAATGCCTCTCGGAACATTCCGTTCACGAGAAGATGTGCAGCAATGCAGAGGCCAAAAGCACCAACAACTTTGCATCAGCCGGATCAGGGTCCACCAGGTGCCAATATTGTAGACATAGATGCAAATCCAGTTTAGATTTGGTCATACATATTCAATCCTGTTCATTGGCAGGAAAAGAGAGCGAATCTGCAGACGATAAATGTAAAACTGACAAAATTGAAATGCCCATAAGACCTGAGTCAGAAGATGAGGCTTCTGTTGATGATCCACAGGTCCGACATCCAATGGAAAATGTGGTTTTTGTTTGGAACAAAATGTTGCATCAAGGTAATTCCTCAACATTTGACAACAGTCACAATGAAAATCCTTCTGACATCACAATGGAAGAAACTTTAAGCAAAGGAAATTTCACATCTACCCCAAACAATAATGACCAGACGGGCGGAGGAAAAAAAGTATTCAAGTGTCCGCACTGTTCATTCTGGGCTTCCACAGCATCTCGATTTCATGTACACATTGTTGGTCATTTGAACAAGAAACCGTTTGAATGTTCGCTCTGCGCTTATCGATCCAACTGGCGGTGGGATATAACTAAGCACATTAGACTTAAATCTGTGCGCGACCCAGACCACTCCAAAGCAAGAGTGCTAATGACAGATGAAACCGGACGAAGAAACtatagtaaatataataaataccttACGTTAATGCAGTCCGCTATGGCAGAGCCGTCTGATTCACTTAGCCGAAAAGGAAGTCACCACGAATCAGACAGGAGCCAATTAGACCAGCCTGACAATGCTCTTGAACACCAATATGATGCTAATTTTGCAGAGAATTCTATTCTAGATGAGCCGTTACCTCTACATGACACTTTGAATAGTGAGGAGGAACACATTGAATTCAAAAAGACAAAGAAGACTATGTGGAAGTGCAAGAAATGTGCATACAGGAATACCAGTAAAGATGCTCTCCTCCTGCATGTCCGGAAACATTCAAAATACAGCCATTTGCCTGAAGAACTGAAAGAACAAGATAGAATTCGACAAGAAGCTGCGGAGAACAGTATGACGAATGGGAATGGTGAAATTATTGGGAGTTTGTCTTACCGCTGTGGTCATTGTTACCAGGTATCCAATTGGAAGCATGTTATTCAGcgaCATTGCCGATTGAAACACAACGGGGACGTCCGAGTAATTGTCGGGGAAAAGGGCTTTCCTGATAAGTTATCCGTGCCAAAAAACCCTCCAAGCAACTCCGGTTTTGATGGAATCTGCTCAAAATGTCCATTCACATCCTCAGACAGAAAAGTTTATGAAACGCATGTTAAAAAACATACACTCTGTCCCGATTCCATATTCAAATGCTTCATTTGCTCGTACTTTGTTAGCACCGAACAAGAGTTGGTACAGCACCTACCACTGCATGGAATTACAGAACCAGAGCAATACATCGCCAACATCCTCAGCTGCAAGAGTGCCGGGACAGAGGTCGGTGTGGGGTCCGGTGCCCCCCTCAAGAGGTACAAATGTACAGACTGTCCATATGAAAGTAACAGTAAATCACAATTCATGTACCATGAGCAATTCCACAAGGCGGGTGATGCTCCTTTCAAGTGTGATATTTGCAGTTATCAAGTGTCAAAGAGACACCTCCTTCATCAACATATGAAAGTGCATGGCATTCCTACACCAAAAGACATAGCTTACGAGTTACATATGGCTGATCCCATTAATGTAACATTAGAAACCTCCCACACTGAACTGGTCCCTATGTGGACCTCAGTTGAGAACCAATTCCAAAAGGTTTTCAAATGTCGATATTGTCCATTGGTCCAGCAGGAAAAGCAGAACATTCTTGATCACGAGAATATGCACAATAAAGACATTAACGGAGTTTTAAAATGCCCCAATTGCACTTTCGGCTGCAGTAGAATGGATGTCCTCTTTACACATTCCGAGGTTCACAATAATACTTACCCTAAGGTGATTTGCCAAGTATATTCTAAGACCAGCGATGAGGAACAAATTAACCATTTGAGAGAATTTATAAATCTgaatgaagaagataataatatgttgGGCATAGAACAAGTTGATCCTGATGAGATGTGTATTGAAGAAGATGCTGACAAGATCAAACAGAAATCTTCCGATAAAGTTCTTTTCTTTTGCTCACATTGTCCGGCGAGATTCCTTTTTGAGAAAGAACTACAAATTCACTCCAAGTTTCATAATATTAGACTGCCATATCAATGTCACATTTGTTCATACACAGCTCGTCAACGGTCACATCTAATGGCGCATAACTGTGTGCATTCAGAGGAATACCAAGCCAAAACCAAGGGCCTCCAAGGGATGCACCCAACTCATCCGAATTTCACACAACCCAAAGTGGTCGGAGTGGCTTCAGGAGTCAATCTTGATGTTTCTGAACCTATATGGATAGTAGTGACCGAATCCAAGAAAAGTGAAACCATCGAGATAATGGATGAACCTATGGAATTAGGTTCCATCGAGGAAACTCCCAGCTATAAATCCTCCGCCAAGCACTTTGTCTGTAACCAGTGTCCAGCTAAGTTCTTTAAGAATTCTGCCCTGCACTATCATATAAGTCTTCATGGAGGAGACGGAGCATTCAAGTGTAAACACTGTAACTATGCGGTGAAAACATTGGGTAATCTTCGCAAACACCAAACAGTTCATGATCATCCTGAAAGTTTCCCTGTACAAAATGATTATGAATCAGGCGATGATATGGTATACAAGCATATACCCTTATCGGGAACTGACCTGTTTCAACATAAAACAGCAGTGGAAAAGCGAGCACTTTCAGAGAAACTCGTCACCAGACCGAATGATCATTTCCCTCCGGTGCTTCAGGCTGATCCGCAGTTTGGTCTTCTCATGCATGGAAATCCTGATTTCATTTATCCCACTTATTTGAAAAATGGTCGCCAAAAAGAAAAACGATACAAGTGCCATAAATGCCCTTCTGCATTTGAAAAACGAGAACAATATAAAGTTCATCTCTCCCTGCATGGTTCGAAACAAAGGTACAAGTGCGAACTTTGCGATTACTCTGTCAAGTACTATGCCAATTACGTTCAACATATGCGTAAACATCAGATGAACGCTGACGCTCATGCTAACCGGCAAAATAATAACCCAACGGGGGTTCAAGTCCCAGCTCATAAAAGTATACAATTAGCAATAAAGACATTGCCTCAACATTCAACACACAAAGAGGGTGGCGCAAAACGGGATCGTTGTCTATCTCTCACAGAACAACAAACATTAAATCTGATGAATCGTCGTAGATCCAGCGCTGCCAGCCATAAGGAAGTAGCGGAGGAGAAGAAAACCTTCAGGTGTATGTATTGTCCCTACGTTAATCAGAGGCGGGACGCGCTGGACAATCATGTCAGACGACATGCACCCGGAGCGGGAGGCAACTTTGAATGTCCGCATTGTCCTTATGCTGCCCCGCAATCACAGTTCCTAAGAGATCATCTTAAAGGGCACTTCAACACACAAAAGAATTTGACTCCTGATTATTTTACTAACTTCGATGGCTTAGAGGTGTACATTACCAGACTTGATGAGACTGACAATCCAAATGAACAAAGCGTTTGCATTTACAAGGCAGAAAACATAAATGAAGGCAccgaatttaaaacaaataacgatgAGCCTAAAATGTACGTTATCCCAAGCACGGGTGAAAGAGTATCATAA
Protein Sequence: MASPSMVQRSGDTLIVRSVVSGDRLFMDISQTPMLSAALAIQGVIPAPVLTLPLQPLQPIQPLPAPVFTQVEEGSPTLSDGDLPQCKIKRNYNCVHCNYFTQNPRHFLTHLRDVHDEKVKIYDCPHCLYASKHFQKLLRHMKMVHGTSKGVEPPASNKRKVREPTPEPGPRPVLSEELDMDELIEKEEPPVPPPEPVVIPPVKSTRGNLKCSLCPFTTNVAGLLTKHERKEHIKTKFFPCGKCNYVTHIKARFTKHVKYHSMPMIKCEVCDFRTPYKWNLDRHMKNHGGTGAFCCSVCNFTADIKQSLTVHEMNHHVPPAGQPIVGIPSGRRRNKVGGSDMLNAQSGLSASRAPEHDTSTGDSIQSEFTDMAMMTDNSNDRHSSSSKADGQEMDTNIDSLQDANEFINYDMFPKADLSIKPSLCEELNLKAQSKKVPRPIPNLIPLHLQAGNQPLKNCQPTSAPLNLTTIQKSFSVKSDDVKYISSSANVSDHYDDSNDQGCDNMSTRGSDESSQQSIQLSTQTIFKKKNASFFDKLKEKLLTTSAESGDLSCKDCGHLSKCLSEHSVHEKMCSNAEAKSTNNFASAGSGSTRCQYCRHRCKSSLDLVIHIQSCSLAGKESESADDKCKTDKIEMPIRPESEDEASVDDPQVRHPMENVVFVWNKMLHQGNSSTFDNSHNENPSDITMEETLSKGNFTSTPNNNDQTGGGKKVFKCPHCSFWASTASRFHVHIVGHLNKKPFECSLCAYRSNWRWDITKHIRLKSVRDPDHSKARVLMTDETGRRNYSKYNKYLTLMQSAMAEPSDSLSRKGSHHESDRSQLDQPDNALEHQYDANFAENSILDEPLPLHDTLNSEEEHIEFKKTKKTMWKCKKCAYRNTSKDALLLHVRKHSKYSHLPEELKEQDRIRQEAAENSMTNGNGEIIGSLSYRCGHCYQVSNWKHVIQRHCRLKHNGDVRVIVGEKGFPDKLSVPKNPPSNSGFDGICSKCPFTSSDRKVYETHVKKHTLCPDSIFKCFICSYFVSTEQELVQHLPLHGITEPEQYIANILSCKSAGTEVGVGSGAPLKRYKCTDCPYESNSKSQFMYHEQFHKAGDAPFKCDICSYQVSKRHLLHQHMKVHGIPTPKDIAYELHMADPINVTLETSHTELVPMWTSVENQFQKVFKCRYCPLVQQEKQNILDHENMHNKDINGVLKCPNCTFGCSRMDVLFTHSEVHNNTYPKVICQVYSKTSDEEQINHLREFINLNEEDNNMLGIEQVDPDEMCIEEDADKIKQKSSDKVLFFCSHCPARFLFEKELQIHSKFHNIRLPYQCHICSYTARQRSHLMAHNCVHSEEYQAKTKGLQGMHPTHPNFTQPKVVGVASGVNLDVSEPIWIVVTESKKSETIEIMDEPMELGSIEETPSYKSSAKHFVCNQCPAKFFKNSALHYHISLHGGDGAFKCKHCNYAVKTLGNLRKHQTVHDHPESFPVQNDYESGDDMVYKHIPLSGTDLFQHKTAVEKRALSEKLVTRPNDHFPPVLQADPQFGLLMHGNPDFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKVHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNADAHANRQNNNPTGVQVPAHKSIQLAIKTLPQHSTHKEGGAKRDRCLSLTEQQTLNLMNRRRSSAASHKEVAEEKKTFRCMYCPYVNQRRDALDNHVRRHAPGAGGNFECPHCPYAAPQSQFLRDHLKGHFNTQKNLTPDYFTNFDGLEVYITRLDETDNPNEQSVCIYKAENINEGTEFKTNNDEPKMYVIPSTGERVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -