Basic Information

Insect: Limnephilus auricula
Gene Symbol: -
Assembly: GCA_951813805.1
Location: OX638399.1:34718746-34744032[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.37 22 6.4 0.2 3 23 357 374 356 374 0.81

2 9 0.031 1.8 9.8 0.3 2 23 382 404 381 404 0.90

3 9 0.17 9.8 7.5 0.4 1 12 409 420 409 429 0.92

4 9 0.0008 0.047 14.8 2.9 1 23 435 457 435 457 0.96

5 9 0.0009 0.053 14.6 3.7 1 23 463 486 463 486 0.97

6 9 0.0011 0.067 14.3 5.7 3 23 494 514 493 514 0.98

7 9 1.5e-06 9e-05 23.3 3.4 1 23 520 542 520 542 0.98

8 9 0.00062 0.037 15.1 3.7 1 23 567 590 567 590 0.97

9 9 0.00062 0.037 15.1 3.7 1 23 611 634 611 634 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.37	22	6.4	0.2	3	23	357	374	356	374	0.81
2	9	0.031	1.8	9.8	0.3	2	23	382	404	381	404	0.90
3	9	0.17	9.8	7.5	0.4	1	12	409	420	409	429	0.92
4	9	0.0008	0.047	14.8	2.9	1	23	435	457	435	457	0.96
5	9	0.0009	0.053	14.6	3.7	1	23	463	486	463	486	0.97
6	9	0.0011	0.067	14.3	5.7	3	23	494	514	493	514	0.98
7	9	1.5e-06	9e-05	23.3	3.4	1	23	520	542	520	542	0.98
8	9	0.00062	0.037	15.1	3.7	1	23	567	590	567	590	0.97
9	9	0.00062	0.037	15.1	3.7	1	23	611	634	611	634	0.97

Sequence Information

Coding Sequence: atgttatttagagcaTCCCGGAAAGCTGAGAGGGTTTTTCAAAGAGCTGAAGCAGCGCTACTAAGGGAGAGAATCCATAATGTGCGCAGCGAACTGGATGGAATATCTCGGGACCTTTTCGATTTACACCTGCATCTGAGTGCAATCCTCATCGAGGAAGATTGgaataaaattgacaatattactTACCAACAAGCACTAAGATGTAAGCAGTCAACGGATGCGAGACAGAAACATAAGTTTGAGAGACTCAACCAAGCCAAAAAGGGTGATCGAAAACAACTTgatcaaaataaagttgttattaaCATTTCGACCCTTGCGCTGAGCCCAGATGCAACCTCAGTGCTTGCTAAGGGGATGAACTACGCAGTTGCCCCCAAAAAGATACCTGTGGAATCTATCGTATGTGGTGTGGAAACAGCACTACATACAATGATGAAAGTACACAAAATGTCAGAATCGCAAGCAGAGAACATACGACAAGAGACTTGCCATATTTTGAAAAGGGCTGAAATACCCCGCCCAAACATCACAAAAGGAGAGTTTGCGGCCCTAAAAGAATTGCGCGCCAATGAGGACATCTTGGTTCTGCCAGCTGACAAAGGAAATGCCACTGTCGTGATTAATACGgtcAACGCAGGCGATGGACTGCCTTCAAAGATTTGCAGAAAGTGTTCTTCAAAGTTGATGTCTGCGTACAAACTGAAGATTCTAGCTGAACATTCGTACCAGCAGCTCTCGGCTTACTTCGCCAAGATCCGAATAAAGGACTCGAGTTTGGAGAAAGAGGATGTGAAGGATGAATTGAAGGCGGAGGTAAAAATCAAAGACGAGATGGCAGAGAGTTTGCTCCAGTGCTGCCTGATGGAGGTGAAGAAGGAAGAAGAGGACGGGAGCGAGGGTCAGGAGCCGGCGGCTGGAGACTCGGACTATTACGATGAAGACGACAACCTGCCGCTAGTGTTTGCCCGACGCGTCAGTATGCACATGCCACCTAAAGCcaacaaaagaaagtacaaagTGGACAGGACCAAGGGCAGGGAAAAGAAATCGCCGGCAGGCATCTGCGAGGTCTGCGGCAAGAGCGTGCGGGATCTTGCGCAGCACCGGCGCTCACACGACCCCAATCGACCGCGCTTGCCGTGCACCCTCTGCCCACGCAGCTTCCTCACGCACTCCGCGCTCTCCGCACACCGCGCTGCCAACCATCTCGGCAAACTGTACTACTGCGCCATTTGTGATAAAAGCTACAAGCGCGGCTGGGAGCACCGGCAACGCCACACGGAGCGGCCGCTGCCGCACTCCTGTGCCGAGTGTCACCGCCGCTTCCGCACCGCCGCGCAGCTCTCCCTGCACACCGTCACGCACACCGCCACGCTCGCCTTTCCCTGCAGTCAGTGCGGGAAGTGCTTCCAGACCAAGTCTTCCCAAGACATGCACAGGAGAAGGGTGCACGAACAagagaagaaaaatatatgtcagTACTGCTTCAAAGGCTTCTTCTCCAGGCATCATCTCAAAGTGCATTTAAGAAGTCACACCAAAGAGAAGAAATACGAGTGCAAGGAGTGCGGCAAGTGCTTTGCCACGCCATCGTGCCTAAACACTCATGCCATGCGACACGCCGGCATCAAGAAAGCCAACTGCTCCGTGGCGCTCACCAAACACATGGTGTCTCACACAAAGCAAAAGGTGCACCCCTGCAAGTACTGCGGGGTGATGTTCGGCCGCACTGACCATCGCAACAGGCATCAGAAAACCGCGCACCAGACTGAAGCAAAGCTGGCGCTCACCGCGCACATGGTGTCGCACACAAAGCAGAAGGTGCACCCCTGCAAGTACTGCGGGGTGATGTTCGGCCGCACTGACCACCGCAACAGGCACCAGAAGACCGCGCACCAGACTGAAGCAAGGCTGTAG
Protein Sequence: MLFRASRKAERVFQRAEAALLRERIHNVRSELDGISRDLFDLHLHLSAILIEEDWNKIDNITYQQALRCKQSTDARQKHKFERLNQAKKGDRKQLDQNKVVINISTLALSPDATSVLAKGMNYAVAPKKIPVESIVCGVETALHTMMKVHKMSESQAENIRQETCHILKRAEIPRPNITKGEFAALKELRANEDILVLPADKGNATVVINTVNAGDGLPSKICRKCSSKLMSAYKLKILAEHSYQQLSAYFAKIRIKDSSLEKEDVKDELKAEVKIKDEMAESLLQCCLMEVKKEEEDGSEGQEPAAGDSDYYDEDDNLPLVFARRVSMHMPPKANKRKYKVDRTKGREKKSPAGICEVCGKSVRDLAQHRRSHDPNRPRLPCTLCPRSFLTHSALSAHRAANHLGKLYYCAICDKSYKRGWEHRQRHTERPLPHSCAECHRRFRTAAQLSLHTVTHTATLAFPCSQCGKCFQTKSSQDMHRRRVHEQEKKNICQYCFKGFFSRHHLKVHLRSHTKEKKYECKECGKCFATPSCLNTHAMRHAGIKKANCSVALTKHMVSHTKQKVHPCKYCGVMFGRTDHRNRHQKTAHQTEAKLALTAHMVSHTKQKVHPCKYCGVMFGRTDHRNRHQKTAHQTEARL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -