Basic Information

Insect: Limnephilus auricula
Gene Symbol: -
Assembly: GCA_951813805.1
Location: OX638398.1:17482814-17498761[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.35 21 6.5 1.3 2 23 124 146 123 146 0.89

2 15 0.042 2.5 9.4 0.1 1 23 507 529 507 529 0.96

3 15 0.058 3.4 8.9 0.9 1 23 577 600 577 600 0.92

4 15 2 1.2e+02 4.1 1.3 1 23 615 638 615 638 0.90

5 15 3.3 2e+02 3.4 0.1 2 23 685 707 684 707 0.88

6 15 2.4 1.4e+02 3.9 0.4 1 23 715 738 715 738 0.89

7 15 0.00022 0.013 16.5 1.0 1 23 744 767 744 767 0.93

8 15 0.00044 0.026 15.6 2.5 1 23 774 796 774 796 0.98

9 15 1.1e-05 0.00068 20.6 2.7 1 23 801 823 801 823 0.96

10 15 0.002 0.12 13.5 3.2 1 23 829 851 829 851 0.96

11 15 0.0044 0.26 12.4 1.0 3 23 859 879 858 879 0.98

12 15 2.9e-05 0.0017 19.3 1.3 2 23 886 907 886 907 0.97

13 15 3.4e-05 0.002 19.1 1.2 3 23 915 936 915 936 0.97

14 15 6.3e-05 0.0037 18.3 2.0 1 23 943 965 943 965 0.98

15 15 0.0071 0.42 11.8 3.1 2 23 972 994 971 994 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.35	21	6.5	1.3	2	23	124	146	123	146	0.89
2	15	0.042	2.5	9.4	0.1	1	23	507	529	507	529	0.96
3	15	0.058	3.4	8.9	0.9	1	23	577	600	577	600	0.92
4	15	2	1.2e+02	4.1	1.3	1	23	615	638	615	638	0.90
5	15	3.3	2e+02	3.4	0.1	2	23	685	707	684	707	0.88
6	15	2.4	1.4e+02	3.9	0.4	1	23	715	738	715	738	0.89
7	15	0.00022	0.013	16.5	1.0	1	23	744	767	744	767	0.93
8	15	0.00044	0.026	15.6	2.5	1	23	774	796	774	796	0.98
9	15	1.1e-05	0.00068	20.6	2.7	1	23	801	823	801	823	0.96
10	15	0.002	0.12	13.5	3.2	1	23	829	851	829	851	0.96
11	15	0.0044	0.26	12.4	1.0	3	23	859	879	858	879	0.98
12	15	2.9e-05	0.0017	19.3	1.3	2	23	886	907	886	907	0.97
13	15	3.4e-05	0.002	19.1	1.2	3	23	915	936	915	936	0.97
14	15	6.3e-05	0.0037	18.3	2.0	1	23	943	965	943	965	0.98
15	15	0.0071	0.42	11.8	3.1	2	23	972	994	971	994	0.96

Sequence Information

Coding Sequence: ATGGATCCACCTTCTTTGGCTGAGTCGGAAGACTCCGACAATGAGCCTCTGTCTTTACTGGCAGAAGAGAAGAACGCCAAGATTTCAACAAAAGATTGTGCCGAGGATAATTTACTAGAATTAAAAACTCGCCCCCTAATTACCAAAATATATGAGAAGAAGAAATTTTGGCGTAAATCTGAAACCGTTCATGAAAAAATCGACAACGACCGTCCTCACCCTATTATCGCAAATGCACATATTCCTGATAGGGAAAATGTGGGATATACAAACATGTTTATTTCTTACGTTTTACCTCCTCTGAAGTTAGATGAACAGTTGTCAGATGTTTGGTTGGATGTCAAAACAATAAACCAGACCGGGCCCATGTCCTGTGTTCTATGCTTCGagtgttttattaataaaaacaaattaataatgcaCTACGTACTTAATCATAACAAACCTTTCTGCGGCACTTGCAGATACCTGCTAGGGGACAAGCAATCCTGGGACATCCACTGGCGCTGCCATCTGCCGCTGCGCTGCTCGCACTGCACTGACGAGTTCCTGGACGAGCCCAGTCTGCGGCTGCACTACAGCGCCATTCATCGCCTCGCACACTGCCGCATGTGCAACCTCATGCTGCCTGCCGGGGACCCCTTCAACACCCATCTCTTCAACAAGCACGCCGTCTCCATCAACCAGGACGAGGAACATGATGAAGTTTGGACTATTGTATATCCCCAATCTTGGATATTTGCCTGTCTCCTCTGCGACAAAGACAACCTccaaaatttcgattttcttcGTCATTTCCTCTACCATCACAAATTCTCTTTAAAATGCTTGACCACGCTGGTAAATGGTAAGAATTTAGGATTCTCCGTTCTCGGAGCGAACGTCAACACGTTTACTCAGTCGGCGGAAACAGATCAGAAGACCAATTACGATGAGGAGaatagaaataattataccaattcggGAAAAGAGTCTAACAATCACGACGATGAGAGTTACCCTTTTATGGAAGCCTTAATTCCAGAAATAAAACAAGAGATTGTAAGTGAAGATGAAAACTCAAAAGATGAAGAGTTTCTCAGTGATATAAAGAGCAAGCAGGAACTGGAGACCCTAGATCCTGGAAATGATCTGTCGCTCGCCACAGAGGATTTCCTCGTCAAGTGGTCGGGGAGAGAAGATCTTGACGTTACCTTTGTACAGTTTATTCCCATCAGAAAGAGCGAAACCGATTATATCACCCAAAACTTTACAGATATAAATTCCGGAGTGGTGACTTCCAATAGCTTCTTAAATTACGAGAATGATAAAAAGTATGATCCGGGAAAACTGACTTGTCCCATATGCTATCCTTTAAAATCCATGCCATCATTCTTTGAGTTGGTAGAGCATGTCACAAAGCATCACGCTTTGAGATCGACTCCCAGCTATACATGTCGGCTATGTTCGATTCATTCTCAAACCCATACTGATATGCAGAAGCATGCCAGCTTTGAGGCGAATCTTTTTACTAAGATGTACATGTGCCAGTTTTGTGATGAAGAGTTTGCATCGAGAGAGGAGGCGCGAGGCCACCTGACAGTCCACTGGGAGGAACTGAAGGTGGTGGAATGTACCAGTCCTCAAGTGGGACTGAAGTGCAGATATTGTTCTCTGTTGTTTTGGcacgagacagaacgagaacgCCACCACTGCCAGGAGCATTACGCATCAAACAAAGAACATTTCTTCAGATGCAGTTTTTGCCACATGATCTTCAGTGACAAGATTTGGTGGGCTTCCCATGAAAAAGACGAGCACAGTCGCACCAGTTCGGTGGAAAGAGCGGACATGTGGTTCGCCTTCAAGTGTGTACTCTGCTGTCGCACGTACAGCGATCTGGTCGCCCTGAGAGAACATTTCCTCGACCTGCACCCCACGGCGCGGCGGCTGTACTGCGCCGTGGCGGGCTGCGTGTCTCGTCCCTTCAGAATGCCCAGGTACCTGAAGCAACACTGTGAGGTGGTGCACAATTCAGAGCGCAGCACTGAGATCCCCGGTCTGGAGGGGCTCCGTTGTGTGGAGTGCGGGAAACAGATGAGGACCGCACGCGCAGCGGCCACCCATCGCACTGTCGCACACGGCGACAAATCCACGTCCAGATTCAAGTGCAGAATATGCGGTCATGGGCTGCCTTCCATACAGGACAGGAAACTACACTACCTGGTGGTGCACCCGGGCGTACCGCCGTTCAGCTGCTCCGTGTGCGGAAAGGGCTACAACAACAAGTCCGCCCTCTACACACACCGTACGCAGAGTCACTCTGTCAACGTTATCACCTACACCTGCAACTTCTGCAAGAAGATCTTTAACAAGCGCGACTCTTACAAGGAACACCTGTTGATCCACGTGGGCCCCCGGCATGCATGCCCGCACTGCTCGCGCGTGTTTGTGCAGCGCTCCAACATGCTGCGCCACATTCGACTTCACACGGGGGAGAAGCCCTACTCCTGCATCCACTGCGATAAGACCTTCAGCGATAAAGGGGCATGCAATGCTCACATAAGgaCACACACCCGGCAAGATATAAACGCTTGCGTTTACTGTGGACAAGAGTTCCTTCAAAAGCAGAAACTAAAGTATCACATGAGGAAACACACTGGACAAGatctGGAGACTTGTGTGATTTGTGCAAAGAAGTTTACAAATCTTACAAATTTGCGAGAACACATGAAAACTCACGACGATTCCTCTCCCACTGGCTGTCCACAGTGCGGTAAAATGTTCACTTCGAAACGCTACATGGAGCGCCACCTGAGGGACAACCACAGCGACACGGCCGAGGTTCACACCTGCCCTCTCTGTGGCAGGTCGTGCCCTCGTCTCACTGCACTCAGGAACCACCTGCTCACACATTCCCCTATCAAACATATTCAGTGTTGTGTTTGTGGAAAGCGCTACAACGGAAAGAAGAGCGTAAACAGACATCTGCAAAAGCGACACGACATACAGCTGACCGACGACGCGTACAGCTCCAGCTACCATCAGCTGGATCCGCGACAATGCAGCCTGGGACTGGACGAAGACACTTTACTGAGAATCTTCGGCCcagaaaaaaatgtcaaaccCTTTCCCTTCCAAGTCACCAGCCTCGGAACCCTcaagattaaaattaaaacctcACAGCCGTACACGCCGTCCAATAATGAGGATTCCGATGGGGATTATAGACCCACGCAAAAGATTAAAACAGAAAACGTTGATCACAGCACCGACGAAGCAGACATCCCTATTTCTGGACTGGATCTTGCATCTCTCAAGTCAAGAGTCAAGCGAGAGACGTCCAGAAATGTCAAGTATGACTTTGACTCTGCTGATGACGATATACCATTCAGCAAAATGGCCAAGAAGAaaggtaaaattaaatttaagaggAAATTTAAAGCGAAAAGTTTACACGTGCAACAGAGTCAGGAGAACAGATCGGAAGAGGATTGTGATGAAGAGATGCCATTGTTTCCACTTGTGGAAATCAAAAGTGAGCCAGTAGATTATGATTAA
Protein Sequence: MDPPSLAESEDSDNEPLSLLAEEKNAKISTKDCAEDNLLELKTRPLITKIYEKKKFWRKSETVHEKIDNDRPHPIIANAHIPDRENVGYTNMFISYVLPPLKLDEQLSDVWLDVKTINQTGPMSCVLCFECFINKNKLIMHYVLNHNKPFCGTCRYLLGDKQSWDIHWRCHLPLRCSHCTDEFLDEPSLRLHYSAIHRLAHCRMCNLMLPAGDPFNTHLFNKHAVSINQDEEHDEVWTIVYPQSWIFACLLCDKDNLQNFDFLRHFLYHHKFSLKCLTTLVNGKNLGFSVLGANVNTFTQSAETDQKTNYDEENRNNYTNSGKESNNHDDESYPFMEALIPEIKQEIVSEDENSKDEEFLSDIKSKQELETLDPGNDLSLATEDFLVKWSGREDLDVTFVQFIPIRKSETDYITQNFTDINSGVVTSNSFLNYENDKKYDPGKLTCPICYPLKSMPSFFELVEHVTKHHALRSTPSYTCRLCSIHSQTHTDMQKHASFEANLFTKMYMCQFCDEEFASREEARGHLTVHWEELKVVECTSPQVGLKCRYCSLLFWHETERERHHCQEHYASNKEHFFRCSFCHMIFSDKIWWASHEKDEHSRTSSVERADMWFAFKCVLCCRTYSDLVALREHFLDLHPTARRLYCAVAGCVSRPFRMPRYLKQHCEVVHNSERSTEIPGLEGLRCVECGKQMRTARAAATHRTVAHGDKSTSRFKCRICGHGLPSIQDRKLHYLVVHPGVPPFSCSVCGKGYNNKSALYTHRTQSHSVNVITYTCNFCKKIFNKRDSYKEHLLIHVGPRHACPHCSRVFVQRSNMLRHIRLHTGEKPYSCIHCDKTFSDKGACNAHIRTHTRQDINACVYCGQEFLQKQKLKYHMRKHTGQDLETCVICAKKFTNLTNLREHMKTHDDSSPTGCPQCGKMFTSKRYMERHLRDNHSDTAEVHTCPLCGRSCPRLTALRNHLLTHSPIKHIQCCVCGKRYNGKKSVNRHLQKRHDIQLTDDAYSSSYHQLDPRQCSLGLDEDTLLRIFGPEKNVKPFPFQVTSLGTLKIKIKTSQPYTPSNNEDSDGDYRPTQKIKTENVDHSTDEADIPISGLDLASLKSRVKRETSRNVKYDFDSADDDIPFSKMAKKKGKIKFKRKFKAKSLHVQQSQENRSEEDCDEEMPLFPLVEIKSEPVDYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00675414;
90% Identity: -
80% Identity: -