Laur015850.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638403.1:7966147-7980157[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.1 65 4.9 5.5 1 23 1109 1132 1109 1132 0.92 2 13 0.02 1.2 10.4 0.6 1 23 1221 1243 1221 1243 0.96 3 13 0.0027 0.16 13.1 2.3 2 23 1246 1267 1245 1267 0.96 4 13 5.4e-05 0.0032 18.5 0.9 1 23 1273 1295 1273 1295 0.98 5 13 0.0008 0.047 14.8 5.3 2 23 1302 1323 1301 1324 0.95 6 13 1.1 63 4.9 1.8 5 23 1337 1355 1335 1355 0.96 7 13 0.0017 0.1 13.7 2.6 3 23 1362 1383 1361 1383 0.97 8 13 0.25 15 6.9 0.5 2 23 1399 1419 1398 1419 0.97 9 13 0.00016 0.0097 16.9 1.2 1 20 1425 1444 1425 1447 0.92 10 13 0.0044 0.26 12.4 2.2 1 23 1455 1477 1455 1477 0.99 11 13 0.02 1.2 10.4 7.3 1 23 1483 1505 1483 1505 0.98 12 13 2.1e-05 0.0013 19.7 0.7 1 23 1511 1535 1511 1535 0.97 13 13 0.0005 0.029 15.4 5.3 1 23 1541 1563 1541 1564 0.96
Sequence Information
- Coding Sequence
- ATGGAAACAATGGAGCAACAATTAGTTCAATGCCCTGTCTGCACCCTCTACCTGCACGAGGGCATGTCCCTCAGTGCCCATCTGGACACCCATCCCAAGGACCAGATGATCATGGCACTGTGCAGTCTCACGCCCGGCAATGCAAAGCCATGGCAGTCGCAGTTTGGCAGTCGCTGCAGCACCCCGTACGACTGCCAGTCGGACCGCTCCTACCGCAGCCGCTCCCGCACACCCGCGCATCGCTACCGCCATCACCACTCGCGCACGCCCTCTGACCCCTACCGCCCTCCCTCCAAATCGCTGGACTCCATGGAGGCTAGTACCTCCACCTCCAAGTCCGACTCCTTCCAGAATGCTCGTCTGTCCATGGACCCGGGCCGCATCGTCACCACCCCGCTGCAGGACTCCGGGTATGCTGAGAAGTCCGACCCCTCTGCTGGCGGTGTTCCAGCCTCCATGATCCCCGATCAGGTGTACTTCATCCCGCAGAATGGATCTCAGCGAGAGTACTCCAGGAACTTGACCAGGCACGGGGAGTTTGTGTTTAGTAAGCAGCCCATGAGTAATGAGTTGCCGTTGGCCGCCTTCGTGCAGCCTAAACAGAGTACTCCCCTGTCCTCCTGCGCCTACAGCTCCAAGGCTGGCTCCTCGCGAGAGCTGGACGAGAGGAAGGAAGGGCCCCCCATGAAGAGCAGTGCCCCTCCAGCCCTGCAGTATGTGAACTCGGGCCCTAAGCCCGTACACTTTGTGCTCCCAGTTTCTCAGTCGTTTATTCAAAGTGGTCATAAAAACATTGTCATCTCGACCGCCTTGCCTGGAGTTTCGCAAACTCAGTGTAAAAATGTTCTCAGGCCGATATTCACTAGTCAGTTTAGTTCTCAAAGTTCTCCACCATCTCCCAATCCCATGTCTCAGATGGGCATCCCCAATGTCAAAGTGCAAGAGGGAGTGCCGTCGCAAAACCCCGTCATGTACCAAAACCTCATGGTGTTCAATCCCTTTGCTAATACCCTCTACCCTCAACCCACCGGAGCCCCCGAAGAGCAAAGCACAACCAGATGCTACTCCAACGCCACCCTCGACACTACCATTCTGAAGTCCACCTGCAGTAAGGCTCCCCACAATAGAATAACTCAACATAGTGAACACAGTTCCGTCATGCATGTGCAAAACCTGCAGTCTGTAGGACTGGAAGTTAGCAATTCTTTAGATGAACTGCCCAGTGAAAGTGATCAACATCTTTTGTCCAATACGACTCACATGGAAGAGGTGATTCACAATTCGGAGATAATGCTAGACCAGGGTGACAGTACTAATGATAATTCTTCCAAGAGTGATAGAGTCAAGATATTGAGCAATGTGAAGGTGGAACTGCCCATCCAACATATACCCGACATCATAGATCTTACAAGTACCAGTGAGCAGCAAAAGAAGACTTGCCCTGATATAACAACACCTGGACTTAACGAAGATGAATCTATCCTGCCAGATTTTGTGGATGCAGAATTATGTCATTCATATTCTCAAAACCGTTTTTCCGTAAGAACAAGTTTCCCCaataaaagtataataaataattcctgCATAGAGATCAGCCAACCTTCATTGCAAGAGGAGGTGCAACCCAAGCAACCGACGACAGTGAATACCTTTTctgtcattaaaaatattggcaATCCAAATAATCTGTACAAAGAAAATGTGCCGCAGAATGAAGATCCCAAAATGGAAGATAATTGTGCGATTCCCGACCTCACTTGCAATGAGAAACCATCAATTTCTCCCTGCAGCGATCTCACTAATGATTCCAACGAAGCGATGTACGAGAGATTATGTACTTTGTCAAATACTGCCAGCACTTCCACTAAATTACCTCCTGTTCAGCAAAATCGGTTTCCAATTTCCGGCATGACTACCGCTCGGAAAaatctttttgtgaaaaaacctaaaaaagttatttcaatcaaatcaaaatcaaaCAGTAACAGTTTAGATAATCCTTCTTCATCAAAAAACTTTTCCTTAGAGATTTCGAAAGTTACCGACCTTGATGATGGAGTCTCCCAGATTTCAAAAAAGTCCTCTGATTCAATACCGGAGGAGATAGGGAGGTTAGatggattttttaaagaattagaCAAACAAAAGAAAGTTTCTGCCGAAGACATAGACATAGATGCACCATCAGAATCTTGGGAAAAGTCCACTTTGCCAGCCGAGTGTGGATCGCTGGATATATCTGTAGATGAGGACTCCAGAAGTTGTGATCAAGACGTAGACATGAAAGAACAATCTATGGACATAGATACAGATTGTATAGTGCGGACTTATAATAACGATTTTAGGAATTGCATTTTGGAAAAGACAGATTCTCTGAAAGGAGTTGATGACAATTGCACTTTGGGAGCGGAGAGACTGATGGAAAGTGCTTCTCAAAAGAATTTCACGGAATTAGAGACTATGCGACCCGTCAATGTGATAGCCTTTGGGAGCATCCTCGCTTCCAACACCCCGTCCGAGAGTAGCACAAACACCACCTTCATAGATGTAGAGAAAAGCAGCACTGTAGATTATTCCACTTCCACTAAAGAAAAACAAGAGTTGGACAGCTTGATCCGAGAGTCTTATCTGCGGGAAAATGTGTACACTGAGTACTTCTCTGCCCACAAGGAGTCTTACTCACACGAGGAGACAGAAGAACAAGCGGAAAGTAACTCAGTGCAGAAGGTGGAAGTTTGTACTAtcgatgaagaagaggaagaaaAGAAACAAGACTATATCAGCTGGGAAACTCAACAGAAAGAAGAGTACGGCTTTTCAAACTTCATGGACTGCAACTACGGACAAGGGATGTATCAGAAACTAGAAGATGCCAAAGAGACAAAGGCTTTGGAAAGGGCGGAGGTGGATCAGAGATCACAGTTTTCTTCAGCTGACGCATGCGGCGGGGAGCACAACGACTACGCAGAGCTCATCTGCCCCAGAGACAGTTACCTGGAGCAGGACCATAAGGGGGCCTTCCTGGCCGCCATGGGCTCGGGGGGTGTGGACACGGGCAACGAGGTGGACGCCCTCAACATACGGACTGACGAGAGAATGCCCCCGCGAGGTGAGCTCTCTGAGCAGGAGAGCAGTGGAGACACGCCCTGGGCTGGGATGTACTGTGACGTGGTGGGTGGTTCCACTTCATACGACCTTCTGGCACGAGAGACTTGGCCCTCTGACGGTTCCGACATGGAAATGCCTGTCAGCCCCGCTAAAGACGCCTACAACGAAATAGAGGACATCCCTATTGTGGTTGGCGTAAAACCACCGGACAGAAACTACCGTTGCGCCACATGCGGAAAGTGCTTTAATTGCCCCAAGGAGCGGCGGGTCCACCGCAGCAAGGAGCACCCGCCCCTTCCTTCTGGAGTGGCAGGCCCCAAAAAGATTGTCAAACGACGCCGTACGCAGATTCTCAAAACTAGCgttaaaatcaaaaatgaaaaatttgtcAAAATTGAGCATTCGGGAACCAAAGTGGAGGAATCTATATTGGACTCGGAACTCATTCCTTCTGCTGATGTTAAGATCGGCGAGGATGATGTGGAAGAGCTGGTGGAGAAGAAGCCAAAGATGGAGCTGGTCAAGGAGGAgccgaagaagaagaagaaggactACCTGTGCGGGACTTGCAAGCTGGAGTTCACGACGGAGCCTGCCTTCAACTATCACCTGAAGACGCACCCGCTGGAGTGTCTCACCTGCGGGAAGTACTTCCACAAGAGGGCCAATCTGCAGCTCCACGTCAAGAGACATATGGGGATTAAGAACTACAGATGTGACATTTGCGAGAAGCGCTTTGTGACGAAGCAGAAGCTGGTGGAGCACTACAACGTCCACACGGGCATCACGCCCATCAAGTGCAGCCTCTGCGATGAGACCTTTCGCCGCCACTCCAACATGGTGCAGCATCGCAACCGCCACCACTTCCACATGAAGAAGCGGCTCCGAGACTACGTCTGCCACTGTGGGGAGGTGTACCACTCCAAGAAGAAACTGGCCTGGCACAAAGAGATTCACGACGACCGGCCCAAAGCCTGTCTCCATTGCTCCGAGAAGTTTATTCACATTGCGTCGCTCACGAGGCACATGCGACGCGCACACAACAGTTACTACATCCCTGATTCAAATAGAGTTAAAGAAAACGTTACTTGTCCCATCTGTGATCACGTCTATCTCAAATCATCCATCGATATGCATCTCCGAACCCACACCGGCAGCAAACCTTACTCCTGCGTTATCTGCAATAAGAACTTCACCACCAAGTGGAATCTAAAACTTCACAGATGGACGCACGCCAATAGATCCAGCAAGCCTTTCAAATGCACGCTCTGCAAGGGAGCCTTTGTCCGCCACACGGACTACATATCTCACATGAACTCGCACAAGTCGGTGCGTCCGTACACTTGTAACTACTGCGGCTGCCAGTTTATACGCAAGTACAACTGCCAGAGGCACGTCAAGGAACACGAGAACGATAAGAAGTACGTTTGCGAGGTGCCGGACTGCGGTAAAACTTTCCACCGGAGTTATTATTTGTCGGAGCACATGAGTGTGCATTCCGGTTTACGTCCCTTCTCTTGTAATATCTGCGGAAAGACCTCTAGTACTAAGTCCAATCACAACAAACACATTAAGATCCATCACGCCCGAGAGCCCGTTACCACAGAGGGATAG
- Protein Sequence
- METMEQQLVQCPVCTLYLHEGMSLSAHLDTHPKDQMIMALCSLTPGNAKPWQSQFGSRCSTPYDCQSDRSYRSRSRTPAHRYRHHHSRTPSDPYRPPSKSLDSMEASTSTSKSDSFQNARLSMDPGRIVTTPLQDSGYAEKSDPSAGGVPASMIPDQVYFIPQNGSQREYSRNLTRHGEFVFSKQPMSNELPLAAFVQPKQSTPLSSCAYSSKAGSSRELDERKEGPPMKSSAPPALQYVNSGPKPVHFVLPVSQSFIQSGHKNIVISTALPGVSQTQCKNVLRPIFTSQFSSQSSPPSPNPMSQMGIPNVKVQEGVPSQNPVMYQNLMVFNPFANTLYPQPTGAPEEQSTTRCYSNATLDTTILKSTCSKAPHNRITQHSEHSSVMHVQNLQSVGLEVSNSLDELPSESDQHLLSNTTHMEEVIHNSEIMLDQGDSTNDNSSKSDRVKILSNVKVELPIQHIPDIIDLTSTSEQQKKTCPDITTPGLNEDESILPDFVDAELCHSYSQNRFSVRTSFPNKSIINNSCIEISQPSLQEEVQPKQPTTVNTFSVIKNIGNPNNLYKENVPQNEDPKMEDNCAIPDLTCNEKPSISPCSDLTNDSNEAMYERLCTLSNTASTSTKLPPVQQNRFPISGMTTARKNLFVKKPKKVISIKSKSNSNSLDNPSSSKNFSLEISKVTDLDDGVSQISKKSSDSIPEEIGRLDGFFKELDKQKKVSAEDIDIDAPSESWEKSTLPAECGSLDISVDEDSRSCDQDVDMKEQSMDIDTDCIVRTYNNDFRNCILEKTDSLKGVDDNCTLGAERLMESASQKNFTELETMRPVNVIAFGSILASNTPSESSTNTTFIDVEKSSTVDYSTSTKEKQELDSLIRESYLRENVYTEYFSAHKESYSHEETEEQAESNSVQKVEVCTIDEEEEEKKQDYISWETQQKEEYGFSNFMDCNYGQGMYQKLEDAKETKALERAEVDQRSQFSSADACGGEHNDYAELICPRDSYLEQDHKGAFLAAMGSGGVDTGNEVDALNIRTDERMPPRGELSEQESSGDTPWAGMYCDVVGGSTSYDLLARETWPSDGSDMEMPVSPAKDAYNEIEDIPIVVGVKPPDRNYRCATCGKCFNCPKERRVHRSKEHPPLPSGVAGPKKIVKRRRTQILKTSVKIKNEKFVKIEHSGTKVEESILDSELIPSADVKIGEDDVEELVEKKPKMELVKEEPKKKKKDYLCGTCKLEFTTEPAFNYHLKTHPLECLTCGKYFHKRANLQLHVKRHMGIKNYRCDICEKRFVTKQKLVEHYNVHTGITPIKCSLCDETFRRHSNMVQHRNRHHFHMKKRLRDYVCHCGEVYHSKKKLAWHKEIHDDRPKACLHCSEKFIHIASLTRHMRRAHNSYYIPDSNRVKENVTCPICDHVYLKSSIDMHLRTHTGSKPYSCVICNKNFTTKWNLKLHRWTHANRSSKPFKCTLCKGAFVRHTDYISHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVKEHENDKKYVCEVPDCGKTFHRSYYLSEHMSVHSGLRPFSCNICGKTSSTKSNHNKHIKIHHAREPVTTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -