Laur003248.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638390.1:19733815-19754028[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.002 0.12 13.5 0.3 3 23 184 206 183 206 0.95 2 11 0.04 2.4 9.4 0.5 1 22 212 235 212 237 0.89 3 11 0.00075 0.044 14.9 0.2 3 23 310 332 308 332 0.93 4 11 0.0085 0.5 11.6 0.3 1 23 338 362 338 362 0.98 5 11 0.00011 0.0064 17.5 0.9 2 23 369 393 368 393 0.89 6 11 0.2 12 7.3 0.1 2 23 401 425 400 425 0.94 7 11 0.43 25 6.2 0.4 2 23 433 454 433 454 0.83 8 11 0.0015 0.092 13.9 0.7 4 23 466 485 463 485 0.92 9 11 0.00029 0.017 16.2 0.2 1 23 491 515 491 515 0.97 10 11 0.005 0.29 12.3 1.3 1 20 523 542 523 545 0.92 11 11 0.017 1 10.6 2.7 2 23 552 576 551 576 0.91
Sequence Information
- Coding Sequence
- ATGAGTTATGTTTTTACGGAGGCAAATAACCCATTGAATGTGCCGCCACCCTCCAATCATCCTCACCTTTACAGCAGTGACATAGAATCTCCCCTGGTGGCAGGGtttgatgatatatttttgaacGATGGAATGGTGATAAACAAAAGCAAAGGGGCCAAGACATTCCCGAGAAAGCGCTGGCCATCGCAGAAGATAATACTTGACACATATGTGTGTGACAAGACGCGCTTAGCAAAGCAGAATCAGGCGCCTGTTACAACTTCTGTTATTCCGGAGTTCTCCGCCCCAGAATACCCAGACAATGTATTGTTTGCAGATGGTAATTTTCCAGAAGATTCCTCTTCACTTAACTTCAGGCAAGAAGTGGCGGCAAGAGAAATCTCGCCCCCCGAGGCAAAGGCAGTGGGGGAAGAAGAGGAATGCGAGGGCTCTGTGAATCCTGGTGGCTCCCTGGACCCGGCGCTGGCCCTGCCTTTGCTGCGGGGGCTGCCCGAGGAGCCCCAGCTGCTGGTGGAGGGGGCGGGGGGCTCGCAGGCCCTGTGGCTGTGTCCCGTCCCGGAATGTAACAGACTCTACAGCCAGAAGGATGCACTCTACCATCACATTCTGACACACTTTGATCTCAATATTTATGCGTGCAATACAGAGGGCTGCAACACTGCATTCATTAGCCAAGATCAGTTGGATGAGCACCACGTGGAGTGCCACCAGACCTTTGAACATCTGCAAGAGGTCGACGAGGAGGAGGTGGAAGATGGAGCCGTCATAGCTGCGGAAGACTTTCCGATGGACCCGTCAACGGAACTGGCCATAGATCAAAAGAAGCGGGCCCGCAGACTGGTGACAGAGGCTCTGGCTTCCGTGGGAGTCACCGAGGATCTAGTGGCCTCGGAGCTGCTTCCTGACGGCACCAGGTCCTGGGCGTGTCCTCAGCCGGAGTGCGAGCTCAGCTTCAAGACGCACTATCTGCTCAAGAATCATATTCTGGCGCATTACGATCTCAGACCATTTAAGTGTTCCCACGCGGGCTGTGACTGGGCCTTTCGCGCCCTCGGCAAGCTGCGTCTGCACGCACTGACGCATGCGGGTCTGGAGCGCCACTCGTGCGTGAAGCCGGGCTGCAGGAAGGCCTTCAGCACCAAGTACAACCTGCAGGTGCACGTGATGCGCGCACACACCGGCCGAGGGGGGCGGCTGCAGTGTCCGGCACGCTCTTGCGAAATGTTGTTCGCCGTGCGTACAGAGCTAGAGACGCATCTCAATACGGAGCATGTGCCACAGCATGCGGTCAATAGGTGCGGCATATGCGGCAAGCGCTTCTGGTGGACGGCAGGGCTGGCGGCTCACGCGCGCACGCATGCGCACCAACCCGGAGACCTGCTGTGCTACTGGCCCGGCTGCGGTCGTCGCTTCCCGCAGCCCTGCCGCCTGCGCTACCACCTGCGCACGCACACGGGGGACAAGCCGTATCGCTGCACCTACCCCTCGTGCAACTGGGCCTTCCCCTCGGCATCCAAGCTGCGCCGGCACGCACGAGCGCATGCGGGGGCCGGCGCGCGGCGACACACGTGCGCAGTTTGCGGGCGCTCTTTCCTGAGGGCGGAGCACCTGCGGGAGCACCAGCCCCGCCACCTGCCGCACAGGCATCACGCTTGCGATCATCCAGGCTGTGATGAGAAATTTTCCAACAAGAGTTCTGTGTACGTCCACAAAAAGCGGCAGCACGGGGTCGATGGCGTTCCCAAGGTCCCTCGAACCAAGAAACCAAAGGGAAAAGTACTAGTCGAAGAACCACCACCCATGGCTATCATTCAAGAGCCAGAATTGTGTGCTGAGGAGCTCCTCTCTCTACGCAGCGCCCGGACCCACGTGCCCTGGGGGCCTCTGGACTTGCCCCAGGGGGTGGCCTTCCTGCCCCATCAGCCCCCGCACCTGCTGCAGCATCTCTCCGGTTGTGACGAGAAGCAGGGAAATCCCCTGGTGTGCGGGGGCCTGGAGCTGGAGGGAGAGGGGGAGGGCGACGGGGGGATGGGGGGCGCCGTGGGGGCCGAGCTGTGTCTGGGGGACGGGGGGGATGTTGGAGACGACGTGGAGACACagggactagatctgaatatcaaCAGTCTACTGATGCAGGAGGAGCTGTCCGATGGTATCCTGTACGCCACGGAAGACGAAGCGGCTCTTCAGGTTCTGCTCCTCAATGAAGACCCTGGACCTTGA
- Protein Sequence
- MSYVFTEANNPLNVPPPSNHPHLYSSDIESPLVAGFDDIFLNDGMVINKSKGAKTFPRKRWPSQKIILDTYVCDKTRLAKQNQAPVTTSVIPEFSAPEYPDNVLFADGNFPEDSSSLNFRQEVAAREISPPEAKAVGEEEECEGSVNPGGSLDPALALPLLRGLPEEPQLLVEGAGGSQALWLCPVPECNRLYSQKDALYHHILTHFDLNIYACNTEGCNTAFISQDQLDEHHVECHQTFEHLQEVDEEEVEDGAVIAAEDFPMDPSTELAIDQKKRARRLVTEALASVGVTEDLVASELLPDGTRSWACPQPECELSFKTHYLLKNHILAHYDLRPFKCSHAGCDWAFRALGKLRLHALTHAGLERHSCVKPGCRKAFSTKYNLQVHVMRAHTGRGGRLQCPARSCEMLFAVRTELETHLNTEHVPQHAVNRCGICGKRFWWTAGLAAHARTHAHQPGDLLCYWPGCGRRFPQPCRLRYHLRTHTGDKPYRCTYPSCNWAFPSASKLRRHARAHAGAGARRHTCAVCGRSFLRAEHLREHQPRHLPHRHHACDHPGCDEKFSNKSSVYVHKKRQHGVDGVPKVPRTKKPKGKVLVEEPPPMAIIQEPELCAEELLSLRSARTHVPWGPLDLPQGVAFLPHQPPHLLQHLSGCDEKQGNPLVCGGLELEGEGEGDGGMGGAVGAELCLGDGGDVGDDVETQGLDLNINSLLMQEELSDGILYATEDEAALQVLLLNEDPGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -