Laur022139.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638411.1:7880862-7913212[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.04 2.4 9.4 0.6 1 23 420 443 420 443 0.96 2 15 0.0059 0.35 12.0 0.8 1 20 555 574 555 576 0.94 3 15 0.35 20 6.5 6.0 1 23 598 621 598 621 0.97 4 15 0.0043 0.26 12.5 1.4 1 23 689 711 689 711 0.97 5 15 0.013 0.79 10.9 3.8 1 23 717 739 717 739 0.99 6 15 0.15 9 7.6 0.1 3 15 751 763 749 766 0.89 7 15 0.00018 0.011 16.8 0.9 1 23 822 844 822 844 0.97 8 15 0.5 30 6.0 5.9 1 23 851 873 851 873 0.95 9 15 0.0045 0.26 12.4 1.8 1 23 894 917 894 917 0.94 10 15 0.44 26 6.2 0.2 1 23 924 947 924 947 0.96 11 15 0.00016 0.0097 16.9 4.8 1 23 977 1000 977 1000 0.96 12 15 1.3e-05 0.00075 20.4 0.4 1 23 1006 1028 1006 1028 0.98 13 15 0.0005 0.029 15.4 1.3 1 23 1034 1056 1034 1056 0.98 14 15 7.4e-06 0.00044 21.2 0.1 1 23 1062 1084 1062 1084 0.97 15 15 0.025 1.5 10.1 1.7 1 23 1090 1113 1090 1113 0.96
Sequence Information
- Coding Sequence
- ATGACTTCTTCATCTTCAATAATCCTCTGCTTCCAAAATAACCTGGGTGAGGATACCCCTATACCTGTGGAACCGGGGGATGATTTCCATACATTCATGGAAAATGCTAGATCTGTTCTCGGTAAAGATGTTGACATATCCACAATCACAGGGGGCGAGGAAGTCTCTTTAACAGATAATATCCACCGATTCATTCTAAACTCTCAACTAATTGCAAATTCCGAAATACAGAACCCTGCCAGTATGCATAATTTCACAATGCAGTCGCAACAGCTGTTACTACCAGATGAAGAACATGTCCCAAATCAAAACGAAGAAGAAATCGTCTATGTACTGAGTGATGGACAAGTATTGTACGGCGATGATGACTGCAATGAAATTTTTGCATATTGTCCAGATTCTACAGAATTCCGGGAGACAATTATTCAGCAAATTTCTGAAagtgatgatgttgctgataaTGGTATAAAGCAATACACGCAGACCGCCAATGTATCTGCTTCACAAAAACATAACACGTTTGAGATTGTTAACGATGAGCCATCGCATTACAATGTCGCTGAACCCAAAGAATGCGTAGTTGTGAAACTTCGTCATTCAAATCCACCAGCTGGGAAGGGAGATATCAGTTTGCAAGGAATGCCACCAAAAGTTAAACATCcggcaaagaaaaataataaaaacccaaacaaatgtcatttttgcTGTGTGTCCTTTCCGTCCAACGCCTTTCTGACATATATTTTCGACGCTAGTGACCAGAGAGACATGCGTAAAATTGAAAAGaccaaaaaatcaacagaaCCTTCAAAAATCATCTGTTCCGCTTGTTTGAATAGAGACTACACCAAATATGACCACATGCCAAAAGTGTTGGGAGAAAACGACTATCTGGTTATTAAAAACAACGTacaaatgatttataaaaaagttgttGCAAATAGAAATGCAAAGGAAGCAACAACAATTCCaaagtatttaaatgaattggTTCGGGAAAGAGACGAAGATCTGATGGAAGAAAAGGAGCCTTTTATTGTGCAGAAGGAAGATGGGAACTTTGATATTGTTGTTGATCAGAACATCGTGCAATCTTTTGAAGGGAACCCTGAAGTTGTagttaaaagagaaaatgttgAAGTTACAGTTGAAGAAGAAGGACCTCTCTATTGTTGTAGGTTGTGCGGCCTAGGATCAACCCAGCTGCCATTGCTCCATAGTTTGGAACATATCCTTACCACGGCAGATCAAAAGATATTCCCTTGTGTGTTGTGTGAATTTGGATACACCTCCTACAGAGAGCTGGAGGAGCACATGCACTCGGACCACGGAGACAACCGCGAGGATCTGGAGCTTCTGCAGCGAGTGCTGAGTGCCCAGGCGGGGGCAGGGGCGGAGGACCACCAGGTCGGGGAGCAGGGGTGGTTGGACGAGGGCACCGGGGTCTTCCTCACCGTCTCCAGAAAGGATGGTATGAACAGTTATGACCAGCCAAACGGAACACAATCATGCCCTCAATTCAACTATCAAAAGGATGATGATTCGGACTCTGAAGGCGGATTGTGGATAGTTCAGGCTGACTACGGAGATGTTGATGAAGAAACGCAACCCATAACCGGAACGGTTGAAGAACCGGATGGAACATTTGTCTCTCCTCGCATGTTCCAATGCGAAGTGTGCAAAAAACGCTACGGTTCCCCTTCCCGTTTAGCCCGTCATGCTTGCAACAATCGGCAGCAGAGGATTAGGAAGAAGCCCGAGGACTCTGCTGGTGCTTTACAAGGAGGCCAATATACCTGCCCCACGTGCCAGCAGACTTTCCATACTAAGATACGCCTACAGTTTCACATGCGTCACCTCCACTGCGACTCCTCTGCCAAGATCCTGCGGTGCTCTGCCTGCCCTGCCCTGTCCTTCCCTACCGAGGCGGAGCTGTACGACCACATCCACTTTGCGCACCCCCGTGTCCGGCGGCACCCGTGCACCATCGAGGGCTGCACCAGGCAATTCTTGCTCAAAGCCTCTCTTACTACCCACCTACGCTGCCACGCTGGGGAGAGGAGCCACAAGTGTGAGGAATGCGGAAAGATGTTCCTCGACAGACAAACACTGTTGGAACATAGAGTCACTCATCTCAAGGTCAAACCTTTCCAGTGCCACATCTGCCTGAAGTATCTGAACAGGCGGTCCCGCCTGAGGATGCACCTTCTGACGCACCAGTCGGAGCCCATTGCGGCGCGCTTGCTGGCCTGCACCCACTGCCACATGGCCTTCAAGGACCAATCACAGGCCCAAAATGGATCGGAAATCATTTTGGAGAGTTTCAATTTTGATGAAAACGGCTGGACTGACAGGCAGGACCTGTCTCAGGATTTGGTTCCGAATTCCACCGAGGAAAATTTGCTGGACAATCTATCCGAGAGTGTGAAGAGTTGTATGACAATCGTGGAACTTGATAAAGCATATCGGTGTGAATATTGTGAAAGGGTATACTCGAGCCAGCAATCCCTGAACCTGCACCGAGGAAGTCATCAGGGACAGACCGAACCGTTCATTTGCCACGTCTGTGGAGCCACCTTCACTACATACTCCCGCTGTACAACACATAAAACAACCCACGGCTTCTACCGCTCCAAACATTCCCCTCCCATATACGACAGTTTCCCGGTGGTGAAGCATTTTCTTTGTGAggTGTGTGGAAAATCTTACCTGCATTGGACGTATCTTCAGGTGCACCGGAGACAAAAACACTCAGACAATGTTCACATGTACAAGTGTAACTCTTGTGGTGACGAATTTCCTAAcagTTGGGGCATTGCTTACCACAGAAAGAAAGTCCATGGCCAGAGGAGCGGCTCAGCACCTACGGGCGAACTTGTTCTTCCTGCCGTAGAAAAGACCCATGAAAAACCGCTGAAAGACAAACATCACCATTGTCAGGAATGTGGGAAGACTTTTGCCCATGCTACTGGGCTCAATACTCACACAAGACGCGTCCACATGCACGAGACAAACTTCTCTTGCGTACAGTGTGACAAGGCCTTCTACTCGGCCAGCGACCTGCAGAGTCACGCACGACGGCACACGGGGGAGAGGCCTTTCCCCTGTGAAGCGTGCGGGCGGTGCTTCCGGACTAAGGGCATGCGTAATGAGCATCTAAGAATACACACGGGGGAGCGCCCCTTCCCCTGCACCGTGTGCGGTCTGGCCTTCCGCCGCCCCTACGCCCTCAAGAGCCACCTGCTGATCCACCAGGGGGGCAGGAAGCACACGTGCCCCGCGTGCGCAAGACCCTTCCGGCTGAGAGCCGAACTGAACACCCATCTGCGCCACACTCACGGTCTTGAACCAGTCGTTGAAAACAAGCAAAAAGAAAATTTCGCGCAATATACATCCGAGCAGAACCCAGAGACAATTTTATACACCGAGGGAGGCGAAGAAATCGTCATATTCAATGAAAATGGAATTGAAACAAGCGAAATAAGTAACTCCATAGAAATTAGCTCTTCTATTGCTAACGAAGAATTGACATTGAAAGCACACGGAAGTAATGATTTAATGCTGCAAAATGACGTTGAAATATACACGGCGATATTCGACAATGGAAGAATCGAATACGAGAATAAATCTAATACAATCGAAATAAATGACGCAGTATTTTTACAGGACGAGGACGTCGTGGTTTCTGGCGAGTTTATCTTGAACGACGGCGAGGAAATAATCGGAGAATTGGACGATCAAGGTGCCATGTTGGTGGTGCAGAGAAGTGATGGAATTATTGACGGAAAGATCGGGGATATTGTAAACGAGGAGTCGGACGATAACGGAGATAATGTGATGGAAGTCGGTAAGGAGATGGAATGTGAACGGTATGATGATATAATGATGAAGGGGGGGGAATTTGGAGGAGATTGGAGAACTGCGGATGCATCCAAGTCGCCAGATGACACGAGGAGGTTCAACGATCTCTTCAGAAGTCATCAGTAA
- Protein Sequence
- MTSSSSIILCFQNNLGEDTPIPVEPGDDFHTFMENARSVLGKDVDISTITGGEEVSLTDNIHRFILNSQLIANSEIQNPASMHNFTMQSQQLLLPDEEHVPNQNEEEIVYVLSDGQVLYGDDDCNEIFAYCPDSTEFRETIIQQISESDDVADNGIKQYTQTANVSASQKHNTFEIVNDEPSHYNVAEPKECVVVKLRHSNPPAGKGDISLQGMPPKVKHPAKKNNKNPNKCHFCCVSFPSNAFLTYIFDASDQRDMRKIEKTKKSTEPSKIICSACLNRDYTKYDHMPKVLGENDYLVIKNNVQMIYKKVVANRNAKEATTIPKYLNELVRERDEDLMEEKEPFIVQKEDGNFDIVVDQNIVQSFEGNPEVVVKRENVEVTVEEEGPLYCCRLCGLGSTQLPLLHSLEHILTTADQKIFPCVLCEFGYTSYRELEEHMHSDHGDNREDLELLQRVLSAQAGAGAEDHQVGEQGWLDEGTGVFLTVSRKDGMNSYDQPNGTQSCPQFNYQKDDDSDSEGGLWIVQADYGDVDEETQPITGTVEEPDGTFVSPRMFQCEVCKKRYGSPSRLARHACNNRQQRIRKKPEDSAGALQGGQYTCPTCQQTFHTKIRLQFHMRHLHCDSSAKILRCSACPALSFPTEAELYDHIHFAHPRVRRHPCTIEGCTRQFLLKASLTTHLRCHAGERSHKCEECGKMFLDRQTLLEHRVTHLKVKPFQCHICLKYLNRRSRLRMHLLTHQSEPIAARLLACTHCHMAFKDQSQAQNGSEIILESFNFDENGWTDRQDLSQDLVPNSTEENLLDNLSESVKSCMTIVELDKAYRCEYCERVYSSQQSLNLHRGSHQGQTEPFICHVCGATFTTYSRCTTHKTTHGFYRSKHSPPIYDSFPVVKHFLCEVCGKSYLHWTYLQVHRRQKHSDNVHMYKCNSCGDEFPNSWGIAYHRKKVHGQRSGSAPTGELVLPAVEKTHEKPLKDKHHHCQECGKTFAHATGLNTHTRRVHMHETNFSCVQCDKAFYSASDLQSHARRHTGERPFPCEACGRCFRTKGMRNEHLRIHTGERPFPCTVCGLAFRRPYALKSHLLIHQGGRKHTCPACARPFRLRAELNTHLRHTHGLEPVVENKQKENFAQYTSEQNPETILYTEGGEEIVIFNENGIETSEISNSIEISSSIANEELTLKAHGSNDLMLQNDVEIYTAIFDNGRIEYENKSNTIEINDAVFLQDEDVVVSGEFILNDGEEIIGELDDQGAMLVVQRSDGIIDGKIGDIVNEESDDNGDNVMEVGKEMECERYDDIMMKGGEFGGDWRTADASKSPDDTRRFNDLFRSHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -