Laur022344.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638411.1:16302450-16330245[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.3 4.9e+02 2.1 0.2 1 23 775 797 775 797 0.89 2 18 0.14 8.1 7.8 0.1 1 23 805 828 805 828 0.93 3 18 0.2 12 7.2 5.1 2 22 956 976 955 976 0.92 4 18 3.9 2.3e+02 3.2 0.2 2 23 1016 1039 1015 1039 0.93 5 18 0.0023 0.13 13.4 0.3 3 23 1045 1067 1043 1067 0.89 6 18 0.0013 0.079 14.1 2.5 1 23 1073 1095 1073 1095 0.97 7 18 0.023 1.4 10.2 2.4 1 23 1101 1123 1101 1123 0.97 8 18 4.9e-05 0.0029 18.6 0.5 1 23 1829 1851 1829 1851 0.98 9 18 0.066 3.9 8.8 0.5 1 23 1858 1880 1858 1880 0.97 10 18 0.11 6.3 8.1 3.4 1 23 1911 1934 1911 1934 0.94 11 18 0.00077 0.046 14.8 1.3 1 23 1941 1964 1941 1964 0.97 12 18 9.9e-05 0.0058 17.6 0.3 1 23 1980 2003 1980 2003 0.97 13 18 5.9e-05 0.0035 18.4 0.2 1 23 2018 2040 2018 2040 0.98 14 18 0.017 0.98 10.6 1.1 1 23 2045 2068 2045 2068 0.95 15 18 0.39 23 6.3 5.7 1 21 2074 2094 2074 2096 0.94 16 18 0.23 14 7.0 3.1 1 23 2102 2124 2102 2124 0.98 17 18 0.00021 0.012 16.6 0.6 1 23 2130 2152 2130 2152 0.98 18 18 0.001 0.06 14.5 3.3 1 21 2158 2178 2158 2179 0.95
Sequence Information
- Coding Sequence
- ATGTCGCTGGTGATCAGCATGGAAGACTCGGGGGGGCAGGATGTCAACATCGAGGTCCACCCTGACGAGGTCTTTGAAACCTTTGTACTGAGGGCGAGCGAAATCCTGGGATATGAAGTGGCTCTCTCCAGCATTACGGGAGAGAAGGAAGTCAGCCCTTCGGATAACATTTACGACTTCTTGATGGGCATGGCTGTACCAGAAGATGAAGATGAAGAAACCATGATGGATGAAGATGCAGGCAGCCAACCTACTCTTACTAACTCGGCAGAGATTGAGGACGGAGAACTAATCACCAATCCAGATGGATCCCTCGTTCAATTGGCCTTTGATGAAGATCACGGAATGATGGTGGAGGGAATTGAAGACGAGAGTATGCTGGACGCAGTGGAGCATCAAGAATGCATGCTCGATGTATTAGCGGAGCAACAGAACATGCTGAATGATGGTGACAGTCAAGGAAGCATGCTTAGCTACGAAGTGGAGAAGCAAAACAACGTAGATAATGAAGTGCTCAAGATACTTAGCAAAGTCAAGGCAGAGGAAGAAAGCCGACTCAAGAAATCAGAAAGCATCCTTAGCTTCAAGGCTAAACAGGAAAGCATAGAAAAAGATGTTTTAAGCCTCCTGGATAAAGTCGAAAAAGAATCTCGCGCAATCGACAGAATCAAAGACAAAAGAGTCGTTGAAAAAACAGTCATCGAAGTTAAAAGAGAAAACCTTTCTGATGACGACTACAGATCTGCCGATGAAAAACCTTACGATTCCATGAGCTCTGATATGGACGACGATGAGATTGAGTTCTTGGAAGAGCATctggaagaagaagaagaggaggAAGGTGAATTTGTCGATGAAGAGTTTGCCGATGATGATGTCGACGATTTCATCGAACAGCAACTTTTGAAAAGCGGTCCTAAGCCAAAAATAATCGCAACCATTAGAGAGGAAAAACCAACCCCAATTAAACCTAAAATTTTAGGTGTCATCAGGGATGAAACTGAAAAGCGGTCAAAGTTTGGCTCAAAAATGagtgtattaaaaaaagaacagAAGTCGGCGAAAGGTGCTAGTCAGGTGTTTGGTTCCGGGGTCCGTAGAGAAAAATCAGTTAGAACTTATGGTAGAGTGCCAGCCATTTTAGAAAGCAAAAATAACGACACTTTGGAGGAAGATAAAGCAAATGATGAAATTATCATGACTGTCATTGAACAAATAGATGATGATGCTGTGGAAAGTGAAACAAATGATATCATTGTGGAGCAAGATCTTCCTTTAGTTGAAGAGGATGATGAGGAATTCACCGAAATTGAGTTTTTGGATGAAGAAATTTTGGAACACGATGCTCAGATCACCAGGTCCAAGATTTCTCCAGCCAAACCGGGCACTTTAATGGACTTGGAAGATGACATCACTTCTTACACAATCGTTAAACACGAGCGTTTGGATGacgaagaaataaaagaaaataagagAAATGCTGACAAGATAAAGAAACTAGCTGATGATAAAATTGCTGACAAGCTAAAGAAAATAGCTGATGAAAAAATTGCTGACCAgaaaaaagatgaaaaaataccCCCAAAAAAAGATGACAAGAAAAAActgaaaaagaaagacaaagtGCAAGACAATGCAATCAAAGTTGAACAGGTGTACACTAGAAAAGAATTACTAGATTTGCTCGAGGGAGATTCTGATAAATCTGATTCAGAAGTAGAAACCAAAATTCGAAATATTAAGGACTCCGATCAATTCaaaatcacaaaaactatgAAACGGAAAGCAAGCGAAATTTCTCCACCCATCCCCGTGAAggataatttaaagaaaaatagtaaaacGAGTAACAAATCTTCAACGTTTGCCTCTAGCAACCTGTCCACTACCGAAACCCagaagattttaaatattataaaaagcgTCCGACAACCGGAGGTCAAAGTTATGAAACTGTCTGATAAAGAGATTGACAGCCTGACAACGAAAGAAAAATTAGATTTGAAAAGGTCAGAGAAAGAAAATCATAGAAACACAAACGGTATTGAAgaagctaatgaaaaaatacatgttcAGGAGGCGTCTGATGAATTATACGCAGATTTGAGCAAGATCTTTGGACTAGAGAAAGAATCGAGCCGGCGGTCCAAATCTAGTCACAATCTGCTGAAGTACTCTCGGATCAAGACTGAAGAGGAAGAAGAGGAGGATGTGGATGGAGCTCTGTCGGAAGAGGACACAATGTTGATGGAAGGCATGGATGACTATGTTCCAGTAGAAGACTTGGAGTGGGGCAGGACCAAGAGTAGGGGCACTCCGGCCTTTGTATGCAGATTGTGTGGACAGAATCTGTACAGATCTATGGATGCCATCACACACGCACTCTTCCACAAGATACCCGATAAGGCCATCTTTCCTTGCATAGTCTGCCAATATGgTTTCACGTCATTCCCCGAGGTACGTAAGCACATACGCAGTGCGCATGTGGACCGTTGTTCTCCCCGCCGCGGCCTGGAGGCGTCCCGATCTGCGAAAGCGGCCCGCAGCCGCCCCGGCCCCATGATGATCAAGACGGAGCCGCAGGATGACTGGCTGGACGAGGGGGAGGTCCTAGTCCTCGAGGAGTGGCTGGACGAGGAAGAGGAGGAGATGGTACGGCAGGCTATGGAGATCAGGAAACCGGATCCGTCAGTACACCACATCAAGCAGGAGAAGCGCACGTTGAAGACAGAAGAGGAAGAAGAACTGGAAATGGAGCAGGAAGAGGACAGTGCGGAGGCCGGTGGAGAAGTGGAGATGGAGGGTCTCGAGGAGCTTCAAGAGCTGCTGCAACTGGGCGGGAGAACCAAACGGAGGGAATGGCTGCACTGTAATTACTGCAAaCGCAAATATGACAGCGCCCAGCACCTAGCCCGCCACAAGTGTACGGGGGCCGCCAGTGGAGACTGTCAGCGCTGCGCCCTTTGCGGGCAGGCCTTCCACACCAACAGGAGGCTAATGTTCCACAGGACCTTCCACCAAGCTGAGCTGATCGCCATGGGCCTGAGCTGCGACCGCTGCGGAGAGAAGGACTTCCAGAATGAGGTGTCGCTGTACGACCACATCAACCAGAACCACAACACCTCCTTCTTCTGTCTCGAGCCGGGCTGTGGGAAGGACTTCCGTCTCAGATCATCACTTAAAAGTCACGGAAGAATTCACGGCAAGAAGAGGCAACATCGTTGTGACGTTTGCGGCAAACAGTTCTTCGATACACAAAACCTCAAGGAGCATAAAATTTCACATCTCAAGGTGAAGCCATTCCAGTGCCACATTTGCCTGAAGTTTGTGAACCGCCGCAGCAGGCTGCGCATGCATCTGTTGGCGCACGAGGCCCGACCGGAGCTGAATGCGGTGCTGGCCTGTCGCTGCTGCAAGATGGCTTTCCGGACCACCTCGGATGCAGAGAATCATGTGAAAGAATCATCTATATGCCGGGAGAATATCGAACACAATCAAGTCAGTGGGCTTGAGCTACTGGCAGAAGCGGAAAAACTGCAAATGGATGAAGAAAGGCGCGACCAAGTGGAAATTGACCTTGAGAAATTGCTCGGGGAAGCTGTGCACGGTGATGTCATGACCCTACAGGAGGATAACCAGGATTGCAGAACAATCGAAGAAGTCCTTAAAGACCATCAAGAATTAGCAGAAGAAAACAGTGGTCTGCACGATGATCTCAATGAATTTAAACAGGAGATAGTTGAAGATTACCAAAGTAAAGATAAAATGGTGGTTGAATTCAGTGAAAACATTATTGAAGAAGGAATCGACACTGATGTAGACTTGAATCAAGATGTTGATAAGGTTCTTGAAGAAATCATGGAAGGAGCTACCAACAAAATGGAAAGAGAAGAAGTTGAATGTACCAAAGCAGAAAGTTTAGCAGAAGGTGACGGCGTTAATGCAACTATGGAAATAAGTACTGCAGAACCAGAATTAGATGTGGATCATTCTAAAATTGACATAGACGAAGTTGAATTGGATTCAGAAGAAATTAAGCTTGAAACGGAGGAAACGGATTTAGGTTTGAAAGAATCACAATTGAATATGGAAGGGCCTGAATTAAGTTCACAAGAGATCAAATTAATTACGGATGGAACTGAAATAGGTTCACAGGAAACAAATTTAGATATGCAAAGAATGGAATTAGATTCgcaagaaacacaaatacacgTGGAAGGATCAGAATTAAGTTTGGAAGAAACAAAATCTGGTACGAGGGGATCAGACTTAGATTCtcaagaaacacaaatacatatgGAAGGATCTGAATTAGGTTTGGAAGAAACAAAATCTGGTATGGGGGAATCAGACTTAGATATgcaagaaacacaaatacatatgGAAGGATCTGAATTAGGTTTGGAAGAAACAAAGTCTGGTAAGGGAGTAACACAATCACAGGCGGAAGGATCTGAATTAGGTTTGCAAGAAACAATATCTGGTATGGGAGAATCAGACTTAAGTTCACAAGAAACACAATCACATGTGGAAGGATCTGAATTAGGTTTGGAAGAAACAAAATCTGATATGGGAGGATTAGACTTAGATTCACAAGAAACACAATCACACGTGGAAGGGTCTGAATTAGGTTTGCAAGAAACAATATCTGCTATGGGAGGATCAGACTTAGATTCACAAGAAACACAATCGCATGAGGAAGGGCCTGAGTTAGgtttgcaagaaataaaatctGATTTAGAAGTATCTGAATTAGGTTCACAAGAAACACAATCACATATCATTGGATCGGAATTAGGTTTGCAAGAAACAAAATTAGATTTGGAAGATAGTGATCAAAGTGTAGAGCAGCAGTTGCAAGAAGCGGGGATTTTATTAGAAACAGGAGAAGAAGTTGATGATCGTGTTCAACAAGAATTAAAAGACGAAccacaaacaacaattgaaaatattcatataGAGCAATTGGACGGTGCTAATTATATTAATCAAGAAAGTGGTACTGATATAGAAAAAATTGAAGGTACTGAAGAAGAATTGTTGGAACAGCTAGAAGCAAGTCAGCACGCTATGGATATTCAAGAAAGTAATTTGGTTCACGAAACTGGTTCGGGTGAAAATGAAATATGTGAAACTGGTGAACCTGAATTAGTACAATCTGTtgaaaatctaaatagtgaACAGGGTGAATCTATTTTAGCACTTCCCAGTGAAGAAATGGGCCAAACAATTGAAATGGTAGAATTAGAAGTGTCTGCTGGATTACCAGATATGATTGAAATAAATGTGGCACATGATCAAGAAACCGCTGCAAAAATTGATCGAAGTGAAgaaatttcttcaaatttttttgatgTTGAAGATGCAGATGATCCGGGAGAGGTTGAACAAGTAGTTGCTGTGAAGAAGACTAGCCAGGAACTGGAGGCGGAACTAACCCCTCTGGGTAGGCTGTGCATAGAAGCAGTCAATATCAAGATGGTGTATCGTTGCGAGTTTTGTGAAAGGGTGTTCTCCCAGAAGGAAGCATTGAACGAGCACCGTCTCATTCACCAGAATATAAAGCTGCCTTACATTTGCAACGTCTGCAATGAAGCCTATTCAACTTACGCACGTGTAACTTCCCACAAGACTACCCACGGCTTCTACCGGGCTAATATTGAAGATGGCCCTCACGAGAGAAGCGCCAGCAAGATGAGCGGTTATGAAGAATTTCCCGTTGTGAAGCACTTCTTGTGTCAGgTATGCAGTAAGACCTTTCTTCACTGGACCTACCTACAGGTGCACCGAAAGAACAAACACGCAGAAATGGCCCAAGTATTCAGTTGCAAACTGTGCGGAGAACAGTTCGCAGAAAGTTGGATGCTGAACCACCACAGGAGAAAGGTCCACGTTGAAGCTGTGAATCTACAAAGAAAAACAGCCTCTAACACCTTCTACAAGTGCGCCGACTGCGGGGAGAACTTCAGCATGAGGAAGGATCTGGCCAAGCACCGGGACACAGAACACGATGACCGCTCCTTGCTGGTGATGAAGAGCAAACCAGGTCCCTTTTCGTGCACCGAATGCGACAAAGTCTACCAAACTAAAGTTGGCCTCGAGGGACACATGCGAATTCACAATGGCGGTGTCTACCTATGTGACTTGTGCGGGAATGGATTTGCACACCGAGCCGGTCTCGAAACCCATCATAAGCGCGTCCATCTGCGCGAGCAACCCCACTCCTGCGAGATTTGCCACCAGAGCTTCTTTTCCTCGGCAGAACTGTTTGGCCACCGGCGCTGCCACACGGGCGAGAAACCCTTCCCCTGCAACTTCTGCCCCATGTATTTCAGGACCAAGGGCAGGAGAAACGAGCACCATAGAGTCCACACGGGAGAACGGCCATACCCGTGCGACCTGTGCGGTCTAGCCTTCCGCCGCTCGCACGCCATGAAGAACCACCGCCTGATCCACACGGGCGAGCGCCACCACTCCTGTCCGCACTGCTCCAAGATGTTCCACGTCAGGTCCAACCTCAACAGCCACATCAAACAGAAGGTGACTCAAATGGCATTAACCTGTAATAACCTCTTGAAAACATCCCTCATTACGATAGTCTCCTTCGTCTTGCATTCTGGTCAATTCCTAGTCCTCGAAGTGGAAGGCGGAACGGAAGTCCGCGCAGCCCTCGAGGAATCCCTCCAAATCCTCGCCTCCTCGGAAATCATCCAGCAGAATATCAAACCAGAAGCCGGCTATAGTGGGGAGGAAGACGAGGAAGATGAAGAGGACGAAGAGGCCGCGGCACACTGGACCGTGGAGGGAGAGAGGCAAGACTCGGACGGGGAGGGAGAGAGGGGAGACTCCATCATGGAGGCAGATGTCGGGGAGATGGAGAGGGTAGACGAGGAGATACAGGTAGTGGTGGAAGACGACGGCATACACTACCAGGTAGAAAGGGTGGGAGGTGAAGGTGGACAGGTGCAGTACTCCGTGAAGTATGTGGAAGAAGAAGTTGCTTTCGCCTACCAATAG
- Protein Sequence
- MSLVISMEDSGGQDVNIEVHPDEVFETFVLRASEILGYEVALSSITGEKEVSPSDNIYDFLMGMAVPEDEDEETMMDEDAGSQPTLTNSAEIEDGELITNPDGSLVQLAFDEDHGMMVEGIEDESMLDAVEHQECMLDVLAEQQNMLNDGDSQGSMLSYEVEKQNNVDNEVLKILSKVKAEEESRLKKSESILSFKAKQESIEKDVLSLLDKVEKESRAIDRIKDKRVVEKTVIEVKRENLSDDDYRSADEKPYDSMSSDMDDDEIEFLEEHLEEEEEEEGEFVDEEFADDDVDDFIEQQLLKSGPKPKIIATIREEKPTPIKPKILGVIRDETEKRSKFGSKMSVLKKEQKSAKGASQVFGSGVRREKSVRTYGRVPAILESKNNDTLEEDKANDEIIMTVIEQIDDDAVESETNDIIVEQDLPLVEEDDEEFTEIEFLDEEILEHDAQITRSKISPAKPGTLMDLEDDITSYTIVKHERLDDEEIKENKRNADKIKKLADDKIADKLKKIADEKIADQKKDEKIPPKKDDKKKLKKKDKVQDNAIKVEQVYTRKELLDLLEGDSDKSDSEVETKIRNIKDSDQFKITKTMKRKASEISPPIPVKDNLKKNSKTSNKSSTFASSNLSTTETQKILNIIKSVRQPEVKVMKLSDKEIDSLTTKEKLDLKRSEKENHRNTNGIEEANEKIHVQEASDELYADLSKIFGLEKESSRRSKSSHNLLKYSRIKTEEEEEEDVDGALSEEDTMLMEGMDDYVPVEDLEWGRTKSRGTPAFVCRLCGQNLYRSMDAITHALFHKIPDKAIFPCIVCQYGFTSFPEVRKHIRSAHVDRCSPRRGLEASRSAKAARSRPGPMMIKTEPQDDWLDEGEVLVLEEWLDEEEEEMVRQAMEIRKPDPSVHHIKQEKRTLKTEEEEELEMEQEEDSAEAGGEVEMEGLEELQELLQLGGRTKRREWLHCNYCKRKYDSAQHLARHKCTGAASGDCQRCALCGQAFHTNRRLMFHRTFHQAELIAMGLSCDRCGEKDFQNEVSLYDHINQNHNTSFFCLEPGCGKDFRLRSSLKSHGRIHGKKRQHRCDVCGKQFFDTQNLKEHKISHLKVKPFQCHICLKFVNRRSRLRMHLLAHEARPELNAVLACRCCKMAFRTTSDAENHVKESSICRENIEHNQVSGLELLAEAEKLQMDEERRDQVEIDLEKLLGEAVHGDVMTLQEDNQDCRTIEEVLKDHQELAEENSGLHDDLNEFKQEIVEDYQSKDKMVVEFSENIIEEGIDTDVDLNQDVDKVLEEIMEGATNKMEREEVECTKAESLAEGDGVNATMEISTAEPELDVDHSKIDIDEVELDSEEIKLETEETDLGLKESQLNMEGPELSSQEIKLITDGTEIGSQETNLDMQRMELDSQETQIHVEGSELSLEETKSGTRGSDLDSQETQIHMEGSELGLEETKSGMGESDLDMQETQIHMEGSELGLEETKSGKGVTQSQAEGSELGLQETISGMGESDLSSQETQSHVEGSELGLEETKSDMGGLDLDSQETQSHVEGSELGLQETISAMGGSDLDSQETQSHEEGPELGLQEIKSDLEVSELGSQETQSHIIGSELGLQETKLDLEDSDQSVEQQLQEAGILLETGEEVDDRVQQELKDEPQTTIENIHIEQLDGANYINQESGTDIEKIEGTEEELLEQLEASQHAMDIQESNLVHETGSGENEICETGEPELVQSVENLNSEQGESILALPSEEMGQTIEMVELEVSAGLPDMIEINVAHDQETAAKIDRSEEISSNFFDVEDADDPGEVEQVVAVKKTSQELEAELTPLGRLCIEAVNIKMVYRCEFCERVFSQKEALNEHRLIHQNIKLPYICNVCNEAYSTYARVTSHKTTHGFYRANIEDGPHERSASKMSGYEEFPVVKHFLCQVCSKTFLHWTYLQVHRKNKHAEMAQVFSCKLCGEQFAESWMLNHHRRKVHVEAVNLQRKTASNTFYKCADCGENFSMRKDLAKHRDTEHDDRSLLVMKSKPGPFSCTECDKVYQTKVGLEGHMRIHNGGVYLCDLCGNGFAHRAGLETHHKRVHLREQPHSCEICHQSFFSSAELFGHRRCHTGEKPFPCNFCPMYFRTKGRRNEHHRVHTGERPYPCDLCGLAFRRSHAMKNHRLIHTGERHHSCPHCSKMFHVRSNLNSHIKQKVTQMALTCNNLLKTSLITIVSFVLHSGQFLVLEVEGGTEVRAALEESLQILASSEIIQQNIKPEAGYSGEEDEEDEEDEEAAAHWTVEGERQDSDGEGERGDSIMEADVGEMERVDEEIQVVVEDDGIHYQVERVGGEGGQVQYSVKYVEEEVAFAYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -