Basic Information

Insect: Limnephilus auricula
Gene Symbol: -
Assembly: GCA_951813805.1
Location: OX638414.1:3909845-3946548[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.038 2.2 9.5 7.1 1 23 285 307 285 307 0.98

2 11 4.4e-05 0.0026 18.8 1.0 1 23 314 336 314 336 0.99

3 11 0.048 2.8 9.2 0.7 3 23 342 362 341 362 0.96

4 11 4.2e-06 0.00025 22.0 0.5 1 23 367 390 367 390 0.96

5 11 8.1e-05 0.0048 17.9 0.2 1 23 395 417 395 417 0.98

6 11 0.00098 0.058 14.5 0.1 1 23 423 445 423 445 0.97

7 11 2.5 1.5e+02 3.8 1.9 1 21 451 471 451 476 0.89

8 11 0.031 1.8 9.8 0.1 1 23 484 507 484 507 0.90

9 11 0.81 48 5.3 0.5 2 23 514 536 513 536 0.95

10 11 8.1e-07 4.8e-05 24.2 1.0 1 23 545 567 545 567 0.99

11 11 0.00021 0.013 16.6 1.4 1 23 573 596 573 596 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.038	2.2	9.5	7.1	1	23	285	307	285	307	0.98
2	11	4.4e-05	0.0026	18.8	1.0	1	23	314	336	314	336	0.99
3	11	0.048	2.8	9.2	0.7	3	23	342	362	341	362	0.96
4	11	4.2e-06	0.00025	22.0	0.5	1	23	367	390	367	390	0.96
5	11	8.1e-05	0.0048	17.9	0.2	1	23	395	417	395	417	0.98
6	11	0.00098	0.058	14.5	0.1	1	23	423	445	423	445	0.97
7	11	2.5	1.5e+02	3.8	1.9	1	21	451	471	451	476	0.89
8	11	0.031	1.8	9.8	0.1	1	23	484	507	484	507	0.90
9	11	0.81	48	5.3	0.5	2	23	514	536	513	536	0.95
10	11	8.1e-07	4.8e-05	24.2	1.0	1	23	545	567	545	567	0.99
11	11	0.00021	0.013	16.6	1.4	1	23	573	596	573	596	0.96

Sequence Information

Coding Sequence: ATGAAGAAGAGAAAGTCGAAAACGAGCCAAGGTAGCTCTAAAGTTGTTGATGTCGACATTGCTGTGTGTCGATGCTGTCTTAACTCCGATAAGAAAGTTTTGGAATTGGGAAACGATTACCACGAATTGTTAGAGCTCCTTGTAGGATATAAGATGGAGAGATCAGAGTACTGGTTGTGCCTGTTGTGCCGTCACTCCATGAAGAAGTTCTCCAGGTTCCGACTCCTTTGCTGCAGATCCCACACACTTCTGGAGGACTATAGCACCAAACACTCCGGCAGGAGAAAAATGGATGTGCATCATTTCAAAAAGAATGGAGAGCAAAATCTAATTCAAGAACCGTCATTTTCCAACACCCTTTGTTTGGACGTTTCAGCGTCGTCGACGGCGTCGACGGATACACCCTACTCAACTCCAATTTCCATTATATCCTTTGCAAAGGATGGAAAACCACAGAAAAACTACACAGAGGACATGGAGACATCTGTTGAAGAAAAAGTGAAACTTGAAACCATAGAAAATGCCATGGAATTGAATACAGATATGTTGTTTCAAAGCATGCAACCCGGTGTTgcgttttttaatgaaaattcaaACGGTTTCAACACTTTTGACGTTAAAGAAGAATTGTTTTACCCTGGCGATGATTTTGTAGAAGATATTTGTATCGTCAAAGAGAAGAAGCGGAAAGTAAAAAAGGATAGAAGAAAAAAAGACGAAAGAAGAAAATCGAAAAGAGTCTCGGTGACATCGGACGAGATGGACCGATACCTGGAGGTGGTGCTTACGTATGAGGAGCAGCTGCAGGAGAGGCGGGATCGTGCGCGGGAAGTGAGCTACACGAGCAGTGCGCACCGCTGCCAGCTGTGCGTGCTGCCCTTCAAGCACCAGCATACACTCGACACACATATGCGGAAACACTGTGAGTCTCGAGGACCGTACGAGTGCCCCTTGTGTCATCAGCGGTTTCCGCGCGCTCGCACTCTGGCTTCGCACCGCCGTGTTCACGCCGCACGCTTGCTGTGCCATGAATGCGGGACTCGCGTGCGCGATCGGGCTCGTTTGCGCGAACATTTGGACTGGCACCGCGGCGCAACGTACGCCTGCGGGGTTTGCGGCCGCGTCTTCAGCCGGCGAACCACTCTGCAGAACCATCTGCGGCTTAAACACGGCCAGGGGAGGTACGAATGCGATACATGCGGCAAGGTATTCGCCGCCAAGGAGCGCCTCAAGGTGCACCAACTCCGACATCAACCGACGCGACAGCACGAGTGTCCCGCCTGCCCAAAGGCATTCTACACGGCGGCGAGCCTCTCTCTGCACCGTGCGACGCACCTACCCTCGGAGGACCACTACTGCGTGGAGTGCGATCGCCACTACAAGTCCGCCAACATACTGAAGATGCATCTGGAGAGGTCTTCCAAACACCGAGACCCGACCACCCTcaaACACGCGTGCTCGAGCTGTCCCCGCCGCTACACCACGGCAGGGTTACTGGCGGCGCACGTGTCGGCGCTGCACGAGCGCGTGGCGCTTCTCGAGTGCGAGGCTTGTGGCGCTCGGTACGCCACTCGCCACGGCCTCAACTTTCACAGGCGCAGAGCTCACCAGGGATTCCGACTAACCAAGAAGTACCAGTGCCAGACGTGCGATAAAGCTTTCACGTCCAAAGCTCTGCTCATCAATCACACAAGGACGCACACGGGTGAACGACCTTTCGAATGCAGTTCCTGCCAGCGAAAATTCACCCAAAAATCCGCAATGCAAACACACATCAAACTAGTTCACCTCAAGCTCAAAAGAAATGTCAAATCCAGGAAAAAGACAACCACAGAAAACGACGTGAATTTTGATGCACAATCGACAAATCCAAAGATAAACTATATTCAAGCTGCGGAAATAACAAATGCAAAGACAAATTATCCAGAATTACCAATTGATTCCTGCACCTTTCTGACTATGGACGTCGACCACGGATTAGTGATGGAGCATTCGGAGGTACAATCATTGATTGAAACCCTTTTGGAGTCATTGCAGGAGCATCCCCTAGACATCCTGGACATAGACCCTCATCCTAGCGACCTCACTCTGGCGCTGTTCGCCGAAGGGGTTTATACCGATAAAATTTCAGGTGAAACTGATGAAGCTTATGGTGAGAGGTTGGATCTTCCTGAGGGCTGGCGTCTCTTGCTGACTGGTTCCAACTCGGATCTGAGCAATGGATATTTTGGTGCAGCGTTTATACACACAAAATTGCAACAGGTAGTTGTTGCCCACCGGGGGACAATAACAACCAAGGTAGGACCGCTGTATACAGACGTTGTTGGTATCCTCATGAACAAATACACCAGTTGTATGAACTTTGCAATAACTTTCATGGACCATGTTAGGCAGGTGATAGATATTGTTAATGCTGAACCGCACAAAAGGTGTTATAACCTCGCCATAACGGGCCACTCCCTCGGGGGCTGGCTAGCGCAGATAACAACTTTAACGGCAAAGTGGTTGAAGATATCTCATGGAGCGTTAATGAAGAATATAGATGGTGGAATCCACGCTAAAACTGTGGCATTCGACAGCCCGGGGGCAAAGAACATTTTGGATAAAATGTGCGTAGATTATTACACTAATTATGGAACCTATGTTCTGCAAAGCGGATTGAACCGCGGGGATCTGGAGACCGGGGCTGCCTGGGAGCAGTTCAACGGGAAGATCATCCTCGCCGAGGGAGATGCAGAGTTGTTCTTTAAGGACACCTGCAACAAGaaccaaaataaaactatttatctGTTTGAAGTATCCGGGGATGTTATCCAATGCAAACAAATATTCAATCAAGACTTTTACGTATCGAGGAAGCTTGTCCATCGAATGCTTATTGACTTACACAAGTTCGCAGAAGTCATGCAAGTCGATGACATGTTTGTTATTTGTAGTGAGGAAGATAAGGCATCTCTTTTGGCACTGATCGGGACTTGTGAGAAAAGAGAAGAAATTTCTAAAAATCTACAAATTGCAGAATGGCGATTTTCTCACGGATCTGTAAAGAGCTTGATTCCTTTTATGTCCACGGATTTGTTTGAGCCGATAGATGAGCTAACCTTCAGCCGAACAGAGCGTAACTTGGTAATCTTAATAGACGAGCCCGGCATGGGCAAAACAACGACTCTTGCAAGATTGTCAAGGCTCATCGAAACATCCTGGGTCATACATATAGAATTGAGACAATTCAAAGCTCATATAGATAGTTTATCAGATCAGTATACACctcaaaatgtggcaatttttctATTAAGCGAGTGCTGCTGTAGTGCTGGCGACAGACTGGCTCACGGGTTGTTAGAGTATTTTCTAGAGAAGCTTGGAAATGATCGAGAGAAAGCGGAAGGGGGACTCACGGAATATGCAGGAGAAGTGCTTCGACGAGCGAAGCAAGTGCTGGGGTCAGATATGGACTGCTTCATGGGAGTTCCTCTGCAGCTGGGAATGCTGGCAGAAGTATTCAGGCCACAAAGTGATCTAATGAACGGTCAGTTTGGAGTCGTTAAACTAATCGCTGAACAAACTTCTGATCTCTTTAATGTATTAATGACACGGtgcgataatgaaaaaaaaactccgtTACATATGGCTGCGGAGTTTGATCATTTGGATATTGTCAAGTTCTTAGTGGAACATCGTGCAGACATTAATACAGGCTGTAAACTAGGTAAGACTGCTCTGATGTATGCGGCTTACTGTCAACACGAATTGATCGTCAAATATCTTATTGAAAGTGGTGCTGAGATCAACTCTGTGGATAATTACGGTAGGACCGCTCTTTATATAGCGGCGGGAAAAGAAAACTTATCAGAAGTAATATGTCTCATTAAAGGTGGCGCTGAGATTAATTCTCGCGATAATGACGGATGGTCGGCCCTGCATATATCGGCAGGTAACGACAAATTCTCGACGGTAAAATATCTCATTGAAAGTGGTGCTGAGATCAACTGTAAAGATAATGGGGGCAGAACTGCATTAAATATAGCGGCGGATAACAACAATTTATCCATAGTAAAATATCTCACTGAAAGTGGTGCCGATATCAACTCTGATGATAATGATAGTAGGACCACACATCAGATAAACAGAGGTAATGACAATTTAtcgataataaatattattaacattgaaAGTGTGGCTGAGATCAACTTTGAAGATAATGACGGTAGGATTGCACCTCACATAACCAGAGATAATGACATTGAAAGTGGTGCTGAGATCAACTGTAATGATAATGATGATAGGACCACACATCAGATAACCAGAGATAATGACAATGTatcgataataaataataataacattgaaaGTGGGGCTGAGATCAACTTTGAAGAAAATGACAATAGTACTGAACATCAGATAACCAGAGTTAACAACATTTTATCAAAAGTAAGTAATGACATTGAAAGTGATGCTGAGATCAACTCTGACGATAATGACGGAAGAACTGAACAAGAGATAGCCAGAGGCAACGATACTGATATATCAAATTCATCGATAGCAACCAATCTCGTAGAAAGTGGTTCTGAGATCAACTCTGGAAATAATATCTGTAGGAATGAACTTCATACAGCGGCAAGTGGGAACAACTTATCAGCAGTGAAATGTCTCATTGAAAGTGGGACTGAGATCAACTGTAAAGATAACAATGGCTGGACTGCGCTTCATATAGCGGCACGTGAAGACTGTTtatctttattaaaatatctcaTTAAAAGTGGTGCTGAAATCCATTCTACTGATAATCATGGCAGGACTGCACTTCATATAGCGGTAATATACAGAAATCTGTCAATAGTAGAATATCTCATTAAAAAAGGTGCTGAGATCAGCCGTAAAGATAATAATGGCTGGAGTGTACTACATACAGCGGCAACGGCAGACAAAGGTTATCAACCAGTTGTAGAGTACCTTCTGCAGCAAGGGGCAGACCTTGACAAAGCAGACAATGAAGGAGATACAGCGTTAACTTGTGCATCGTTTAAAAAGAAGTGGAAAGTGGTACAAATTCTGCTGGAGCAGGGATCTGATGTCAACGCTGATAATGGTAAAGCTCTTAGTTGGGCTATATCATGGGGGGAATGGTCTATAGTAAAGTCTTTTATAGATAAAGGAGCGTCGGTTCGTTTAGGCGATATTGACAATGACAATCAATTATACAAGTTTAAAGAAAAATTCCCAAactatgaatttaaaaaagttaatccacgataa
Protein Sequence: MKKRKSKTSQGSSKVVDVDIAVCRCCLNSDKKVLELGNDYHELLELLVGYKMERSEYWLCLLCRHSMKKFSRFRLLCCRSHTLLEDYSTKHSGRRKMDVHHFKKNGEQNLIQEPSFSNTLCLDVSASSTASTDTPYSTPISIISFAKDGKPQKNYTEDMETSVEEKVKLETIENAMELNTDMLFQSMQPGVAFFNENSNGFNTFDVKEELFYPGDDFVEDICIVKEKKRKVKKDRRKKDERRKSKRVSVTSDEMDRYLEVVLTYEEQLQERRDRAREVSYTSSAHRCQLCVLPFKHQHTLDTHMRKHCESRGPYECPLCHQRFPRARTLASHRRVHAARLLCHECGTRVRDRARLREHLDWHRGATYACGVCGRVFSRRTTLQNHLRLKHGQGRYECDTCGKVFAAKERLKVHQLRHQPTRQHECPACPKAFYTAASLSLHRATHLPSEDHYCVECDRHYKSANILKMHLERSSKHRDPTTLKHACSSCPRRYTTAGLLAAHVSALHERVALLECEACGARYATRHGLNFHRRRAHQGFRLTKKYQCQTCDKAFTSKALLINHTRTHTGERPFECSSCQRKFTQKSAMQTHIKLVHLKLKRNVKSRKKTTTENDVNFDAQSTNPKINYIQAAEITNAKTNYPELPIDSCTFLTMDVDHGLVMEHSEVQSLIETLLESLQEHPLDILDIDPHPSDLTLALFAEGVYTDKISGETDEAYGERLDLPEGWRLLLTGSNSDLSNGYFGAAFIHTKLQQVVVAHRGTITTKVGPLYTDVVGILMNKYTSCMNFAITFMDHVRQVIDIVNAEPHKRCYNLAITGHSLGGWLAQITTLTAKWLKISHGALMKNIDGGIHAKTVAFDSPGAKNILDKMCVDYYTNYGTYVLQSGLNRGDLETGAAWEQFNGKIILAEGDAELFFKDTCNKNQNKTIYLFEVSGDVIQCKQIFNQDFYVSRKLVHRMLIDLHKFAEVMQVDDMFVICSEEDKASLLALIGTCEKREEISKNLQIAEWRFSHGSVKSLIPFMSTDLFEPIDELTFSRTERNLVILIDEPGMGKTTTLARLSRLIETSWVIHIELRQFKAHIDSLSDQYTPQNVAIFLLSECCCSAGDRLAHGLLEYFLEKLGNDREKAEGGLTEYAGEVLRRAKQVLGSDMDCFMGVPLQLGMLAEVFRPQSDLMNGQFGVVKLIAEQTSDLFNVLMTRCDNEKKTPLHMAAEFDHLDIVKFLVEHRADINTGCKLGKTALMYAAYCQHELIVKYLIESGAEINSVDNYGRTALYIAAGKENLSEVICLIKGGAEINSRDNDGWSALHISAGNDKFSTVKYLIESGAEINCKDNGGRTALNIAADNNNLSIVKYLTESGADINSDDNDSRTTHQINRGNDNLSIINIINIESVAEINFEDNDGRIAPHITRDNDIESGAEINCNDNDDRTTHQITRDNDNVSIINNNNIESGAEINFEENDNSTEHQITRVNNILSKVSNDIESDAEINSDDNDGRTEQEIARGNDTDISNSSIATNLVESGSEINSGNNICRNELHTAASGNNLSAVKCLIESGTEINCKDNNGWTALHIAAREDCLSLLKYLIKSGAEIHSTDNHGRTALHIAVIYRNLSIVEYLIKKGAEISRKDNNGWSVLHTAATADKGYQPVVEYLLQQGADLDKADNEGDTALTCASFKKKWKVVQILLEQGSDVNADNGKALSWAISWGEWSIVKSFIDKGASVRLGDIDNDNQLYKFKEKFPNYEFKKVNPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -