Laur019142.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638407.1:3460182-3490862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00016 0.0094 17.0 0.7 2 23 189 210 188 210 0.97 2 13 4.1e-05 0.0024 18.8 0.0 2 23 217 238 217 238 0.97 3 13 0.012 0.7 11.1 3.7 2 23 243 265 242 265 0.95 4 13 0.43 26 6.2 0.6 1 23 271 294 271 294 0.85 5 13 9e-05 0.0053 17.8 1.1 1 23 301 324 301 324 0.98 6 13 0.0022 0.13 13.4 0.2 2 23 331 352 330 352 0.92 7 13 1.1e-05 0.00067 20.6 0.7 1 23 358 380 358 380 0.97 8 13 1.5 87 4.5 0.5 1 12 386 397 386 399 0.90 9 13 0.022 1.3 10.2 1.4 3 23 597 616 596 616 0.78 10 13 0.00074 0.044 14.9 0.4 2 23 621 643 620 643 0.95 11 13 0.28 17 6.8 0.7 1 23 649 672 649 672 0.86 12 13 0.0026 0.15 13.2 1.3 1 23 679 702 679 702 0.97 13 13 0.00057 0.033 15.3 0.3 3 23 710 730 708 730 0.95
Sequence Information
- Coding Sequence
- ATGGATGTGGAAGCGCTCGCCGCTGCGGCAGTATATCTTTTTAGTATTACTACCATTATCGAAATGTGCACGATAAAAAAGTTATCAGAAGGAATTGGCGAAGAAGAAGATGCATTCATCAAATTAGATCAAGAGTTGATAGATCTGCATTATGCCTGGCTGTGTGAGACGTGTGTGTCTCGGCTGAGAGACGCCGTGGCATTCCGTAGGCAGGTGGAGACAGCGGGGGACCTTCTCAGAGGGCAGAGTCCTGCCGATGACAAGTCCGCTATTATTAAATGCAAACCTGCTGATGTAAAAGTTGAAGATGACTACATTTTTGAAGATGATTCGTTAGATGTAGAATTTGAGGAACCCTCGGTTGCGGACACAGAACAAGAGCAAAATGACAACTTAAAGCTTCCAGAGAGTTGGGAAAATTGGAAAGAGTTTAACAGACTCCCGTGGAGTGAAGATGAAGGTTCAATAACGGAACAGAAAGATAGTAAACGAATCGAGTGGATAGATCAACCACAGTTTCCCAAAATGGACAATAAGACACTCATATTAGATGAAGACGCCAGTCAATGTCCCACTTGCGATAAATTTTTCCCACTAAGGCATGATCTAATAGAACATCTGGAGACACACGTTCCCGTGCCCAAGAGGGTGTGTGAATACTGCGGGAAGCAGTACGCGGGCTGGTCCGGCCTGAACCAACATCAGAATATTCACATCGGGAAGGTGCCTTGTCCCAAGTGCCGCCTCAAGTTTGTGACGAAGCACAGCATGCTAAAGCACATACAGCATAGACACAAGAAGGAACGCAAATTCCCCTGTTCGGACTGTGATGCTATATTCCCCAGGTATCTGCTGAAGAAAGAACATCAGTTCCAGAAACACGGAATTTGGTACAATCGGTACCCATGTCCTGAGTGCCACAAGGAATTCTTCAACAGCACAGGACTCAGCTATCACGTGCGGCGAATTCACCGCGCTGAGAAGAATCTGCCGTGTCCAGATTGCGATCGCATGTTCTTCAACCGGACGGCGCTCTCCATGCACTCAGTCTCACACAGCGATATAAGGAATTTCATCTGTGACTTGTGCAGCAAAGCATTTAAAAACAGGAAGCAGCTCAGGGCACACCTGGACATGCACTACAACATACGGAAATTCAAGTGCACCATCTGCTCAATGGCCTTCGTCCAGTTCACCAAAGATATGCAGTTTGAAGAAATGTTTATAAAACCGAAAGAAGTGGTTTTGCCCAAACTCTTCAAAGATTCTTGTGCCTTTTGCAAGAGTTCTTACAATCTTAGGAGAATTAACGGCGGTTTCAGTGAAGATGGCAAACCGGAAAACTGCACACAAATGTTGATgtcttgtttttatataaagTTGATAGATCTGCATTATGCCTGGCTGTGTGAGAGTTGCGTGTCGCGACTGAGAGACGCCGTGGAATTCCGCAGGCAAGTGGAGACAGCGGGGGACCTTCTCAGGGGGCAGAGTCCTGCAGATGACAAGTCCACCATCATTAAATGGGAACCTGttgaagtaaaaattgAAGAAGTCTACACTATAGAAGATGACACGTTGGACGTAGAATTTGTGGGACCCTCAGTTACGAAGACGGAACAAAATCAAAAGGATAATATAAAGCGACCGGACATTTGGGAAAATTGGGAAGAGTTTAACAGACTCCCGTGGAGTGAAGACGAAAGTTCAATAAGGAAACAGAAAGATAGTAAACGAGTCGAGCTGGATCTAATAGAACATCTGGAGACTCACGTGCCCAAGAAGCTGTGTGAATACTGCGGGAAACAGTATGCACATTCCAGCTTGCTACAACACCAGAACTCTCACATCGGCAAATTGCCGTGTCCCAAGTGCAGCCTCAAGTTTGTCAGGAAGGACAAAATGCTGAAGCACATACAGAATATACACGACAGGGAACGCACATTCCCCTGTCCTGACTGTGATGATGTATTCTCCACTTATCTGCTGAAGAAGGAACATCAGTTCCAGAAACACGGAGTTTGGTACAATCGGTACCCATGTCCCGAGTGCCACAAGGAATTCTTCAATGGCACGCGACTCAGCATCCACGTGCGGAGAACTCACCGCGCTGAGAAGAATCTGGCGTGTCCGCAGTGCGGTCGCATGTTCTTCAACCAGACGGCGCTCTCCACACACTCACTATCACACAGCGGTAAGTTTAGTCATCATTCATCGCTGTGTTCTCTCTCCATCGCTTCAGACATTGGTGGATATTTCCGGGAGTGGACTGTAAAACTTGAAGAACCAGTGCAGAAGGATTCTAGAAAATGA
- Protein Sequence
- MDVEALAAAAVYLFSITTIIEMCTIKKLSEGIGEEEDAFIKLDQELIDLHYAWLCETCVSRLRDAVAFRRQVETAGDLLRGQSPADDKSAIIKCKPADVKVEDDYIFEDDSLDVEFEEPSVADTEQEQNDNLKLPESWENWKEFNRLPWSEDEGSITEQKDSKRIEWIDQPQFPKMDNKTLILDEDASQCPTCDKFFPLRHDLIEHLETHVPVPKRVCEYCGKQYAGWSGLNQHQNIHIGKVPCPKCRLKFVTKHSMLKHIQHRHKKERKFPCSDCDAIFPRYLLKKEHQFQKHGIWYNRYPCPECHKEFFNSTGLSYHVRRIHRAEKNLPCPDCDRMFFNRTALSMHSVSHSDIRNFICDLCSKAFKNRKQLRAHLDMHYNIRKFKCTICSMAFVQFTKDMQFEEMFIKPKEVVLPKLFKDSCAFCKSSYNLRRINGGFSEDGKPENCTQMLMSCFYIKLIDLHYAWLCESCVSRLRDAVEFRRQVETAGDLLRGQSPADDKSTIIKWEPVEVKIEEVYTIEDDTLDVEFVGPSVTKTEQNQKDNIKRPDIWENWEEFNRLPWSEDESSIRKQKDSKRVELDLIEHLETHVPKKLCEYCGKQYAHSSLLQHQNSHIGKLPCPKCSLKFVRKDKMLKHIQNIHDRERTFPCPDCDDVFSTYLLKKEHQFQKHGVWYNRYPCPECHKEFFNGTRLSIHVRRTHRAEKNLACPQCGRMFFNQTALSTHSLSHSGKFSHHSSLCSLSIASDIGGYFREWTVKLEEPVQKDSRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -