Laur017531.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638404.1:32742650-32745220[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.013 0.78 10.9 0.3 2 20 69 87 68 89 0.92 2 17 0.18 11 7.3 0.1 2 20 94 112 94 113 0.93 3 17 3.5e-05 0.0021 19.1 0.3 1 23 118 141 118 141 0.96 4 17 0.078 4.6 8.5 2.1 1 23 289 312 289 312 0.93 5 17 0.00033 0.019 16.0 1.8 1 23 360 383 360 383 0.93 6 17 0.0011 0.065 14.3 3.9 2 23 423 444 422 445 0.95 7 17 4.8 2.9e+02 2.9 4.7 1 19 451 469 451 473 0.92 8 17 0.016 0.96 10.7 1.8 2 23 480 501 479 501 0.97 9 17 1e-05 0.0006 20.8 0.1 3 23 514 535 512 535 0.95 10 17 0.00013 0.0075 17.3 3.3 1 23 571 593 571 593 0.98 11 17 0.0014 0.084 14.0 1.5 1 23 599 622 599 622 0.96 12 17 0.016 0.92 10.7 1.0 2 23 628 650 627 650 0.96 13 17 0.0047 0.28 12.4 0.1 1 23 665 688 665 688 0.95 14 17 0.006 0.36 12.0 0.4 2 23 695 716 694 716 0.97 15 17 0.00015 0.0087 17.1 1.2 2 23 724 746 723 746 0.94 16 17 0.00026 0.016 16.3 0.3 1 23 752 774 752 774 0.98 17 17 0.052 3.1 9.1 4.1 1 23 780 802 780 802 0.96
Sequence Information
- Coding Sequence
- ATGTGTTGCCCACTTTGCAGATACCAAGAATGTGGAAGTAAAGCCAAGAGGAAGCAGGACACTGACCGCAAACAGGACAAAGTGCTTGATATAGAGGTGGGTGTAAAAAAGGTGAAAAAGAAGTGCTTCGCTAACCTTCGAAACCATTGCGCCCTTTCCGGAGCTGAGCTCCGAGAACTGTTCAGGAAGAAGGAGAGCGTTGTCACCTGCCACCTGTGCTCTAAGAGCTTTATCAGTGGCAAGCAGCTGGAGCTGCACGTGGCCAAGTGCACCGAGGCGGTATGCTCCAAGTGCAAGGTGAAGTTCTCCAGCGTGGGCCTGCTGGCCAGCCACCGCGCAGACTGCGCTGTGTTCGCCTGCCAGACCTGCCCTAAGCGCTTTGTGAGCCAAGACACGCTGGCCGCCCACCAGCTCAGCAAGCACGCCACTGCCAAGTGCCACTTCTGCCTTGCCTACTTTACCTCGGACGCCGAGTGCTATGCCCACAAGTCCGACTACCACAACTTCGAATGTGACGTGTGTCTCAAAGTGTTCTTGTACACTATCGACCAAATGAAAAACAAGTTCACCAAGACCAAAGGTAAAGTCATCTGCGATCTGTGCGAGAGGAACACTGTCCTCGAGGAATCCAATGACGAAGTGGAGCTGGAAAATGAGTCGGAACAAGGGCCTATGAATGTGAGTAGCGCCAAGAGTATTAAAGTGGAGATAGAGAACCAAGTTTACCCCATCAAACTGGAAGCTAGTCAGCTGAACGAGGATCTGTTGGAGAACGAGGGGGGAGATAGCATATCCCAGGAAGATGCGTTTTACGCTATTTTGCCTGAAAACAGCTTTGGAGATGGGGAGGATACTACCATGCAATATCAGTGTTGCTATTGCAAAGGAGTTTACAATTCCTTCAACGAATTGAACAACCACTTGATCGACTCCCACAACCTCCAACTTCAGGAACTGTCGACAGATTCCCAGGTTGAGAAAGAAAGTTCGACCGATGCTGTAGAAAAATACCAAAGCAAGATAGACGAACTGTTTGATACGTCCATGTCTGTGATGGATTTCGAAAGTCAAACAAAATATTCGTGTACAGTTTGTGAAAAGGTGTTCAAGTCGTCTGTTACTTACAGAAAGCACGCATTCCGTTCCCACAAGTTGCACCTGTTGTTCGGCTTGGACAAACAGTTCCACTGCCAAAACTGCCGGGTGGATCGCAACTCGTTGTGCGAACTGAACAAGCACCTGTACTCCCGCCACGAATCCAACGTCAAGTGCGAACATTGCGACTACGTCTTTACTACCAAGCGAGAGAAGAAGATTCACATTCTGAATCACCATCCCGACCAGCCCGCCTTCTCCTGCTTGGACTGTGCCTCCAAGTTCACTTCCCACAATGAGCTGAAGCAGCATTGCTCCTGGCACTGGTTCCATGAAATTGTCGAGTGCAgagattgcaataaaaaaatcaaaggcAAGAAGAAGTTCAAGATACACATGAACTATCATAAAATTCGTCAAAACCAAGGGGACAAGGAAATTATATGTCCCGAGTGTGGCAAGGGGTTATCATCCAGGTCCAGTCTTCAAGCGCACTTACGCTACGTCCACAGAGGAGGAAATGAGGAGACCATCTTATGTGGTGACTGCGGGCTGTTGGTTAAAGTGAGGCGCTTCAACCGTCACCACGAGCGCATGCACAGCCAGGGCAACCTCTTCCGTTGCCACATCTGCACTCGGTCCTTCTTCGCCAAGGAGCTGCTGCGGCAACACATGGACACCCACATCGACGGGCGTCCTCACGAGTGCGATCAGTGCCCCGCCGCCTTCAAGCAGGTACGCAACCTGCGAATGCACAAGCGCAACTACCATTCCGACAATACTACTTCGTGCAAAATGTGCAATGTTCATTTCGACACTCCCGAGGCTTACTCGGTACACCGCCTCACGTACCATAAGCGCACCCCGCGCCCCATCAAGCTGGACTCGGAGGAAGGCTTCCTGTGTCCGCTGTGTCCCAAGACGCTCAAGTCTAGCCGCGCCGTGGCTACCCACCGCCGCATCGCGCACGAGAAGCACCTGCACGTCAAGTGCGACCTGTGCAACCTAGAGTTCCCCTTCATCCGCCAGCTGCAGAGCCACATGACGAGCCACACGGAGCCCAAGCCCGACTTGAGCTGCGGCTTCTGCCATCGCACCTTCACCACCCTGGGCTCTCTCAACAGCCACATCAAGTGGGTGCACGTGGGCGAGCGCAACTTCCCCTGCTCATACTGCCCGGCCAAGTTTAAGCGCAAGGACGCGCAGATCGTGCACGAGCGCACGCACACGGATGAGCGGCCGTACAGCTGCGGTGTGTGCCAGCGCCGCTTCCGCCAGCGCACGGACTGCAAGCGCCACGAGGCCAAGCACAGCATGCCGGGCTTCCGCTACAACAAGCCTCACCGCATGCGCCCTCGACCGCTGCCCGAGGTGGTCATCGAGGAGGTGGTGGAGCAGGAGGGCGGACTTCTGCTGCAGGTGCCCGGCGAAGACAATCAGGCGGCCGCCTTCCTCAGCTACATCGTACAGAACTAA
- Protein Sequence
- MCCPLCRYQECGSKAKRKQDTDRKQDKVLDIEVGVKKVKKKCFANLRNHCALSGAELRELFRKKESVVTCHLCSKSFISGKQLELHVAKCTEAVCSKCKVKFSSVGLLASHRADCAVFACQTCPKRFVSQDTLAAHQLSKHATAKCHFCLAYFTSDAECYAHKSDYHNFECDVCLKVFLYTIDQMKNKFTKTKGKVICDLCERNTVLEESNDEVELENESEQGPMNVSSAKSIKVEIENQVYPIKLEASQLNEDLLENEGGDSISQEDAFYAILPENSFGDGEDTTMQYQCCYCKGVYNSFNELNNHLIDSHNLQLQELSTDSQVEKESSTDAVEKYQSKIDELFDTSMSVMDFESQTKYSCTVCEKVFKSSVTYRKHAFRSHKLHLLFGLDKQFHCQNCRVDRNSLCELNKHLYSRHESNVKCEHCDYVFTTKREKKIHILNHHPDQPAFSCLDCASKFTSHNELKQHCSWHWFHEIVECRDCNKKIKGKKKFKIHMNYHKIRQNQGDKEIICPECGKGLSSRSSLQAHLRYVHRGGNEETILCGDCGLLVKVRRFNRHHERMHSQGNLFRCHICTRSFFAKELLRQHMDTHIDGRPHECDQCPAAFKQVRNLRMHKRNYHSDNTTSCKMCNVHFDTPEAYSVHRLTYHKRTPRPIKLDSEEGFLCPLCPKTLKSSRAVATHRRIAHEKHLHVKCDLCNLEFPFIRQLQSHMTSHTEPKPDLSCGFCHRTFTTLGSLNSHIKWVHVGERNFPCSYCPAKFKRKDAQIVHERTHTDERPYSCGVCQRRFRQRTDCKRHEAKHSMPGFRYNKPHRMRPRPLPEVVIEEVVEQEGGLLLQVPGEDNQAAAFLSYIVQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -