Laur019134.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638407.1:3313102-3353454[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00086 0.051 14.7 1.3 2 23 257 278 256 278 0.97 2 13 0.095 5.6 8.3 0.4 3 23 284 304 283 304 0.95 3 13 0.019 1.1 10.5 0.1 2 23 311 333 310 333 0.95 4 13 0.0011 0.064 14.4 0.6 1 23 370 393 370 393 0.96 5 13 1.1e-07 6.4e-06 27.0 1.2 2 23 400 421 399 421 0.97 6 13 1.7e-06 0.0001 23.2 0.7 1 23 427 449 427 449 0.98 7 13 0.093 5.5 8.3 0.8 3 23 457 477 456 478 0.95 8 13 0.0075 0.44 11.7 4.6 2 23 900 921 899 921 0.94 9 13 0.11 6.6 8.0 0.5 3 23 927 947 926 947 0.96 10 13 0.012 0.73 11.0 0.1 2 23 954 976 953 976 0.96 11 13 0.096 5.7 8.2 0.6 1 23 982 1006 982 1006 0.96 12 13 0.00066 0.039 15.1 0.2 1 23 1013 1036 1013 1036 0.98 13 13 7.2e-06 0.00042 21.2 0.6 2 23 1043 1064 1042 1064 0.97
Sequence Information
- Coding Sequence
- atgacaAGAGACCCCAAAAGgttaCGAGTTGGTTCTGTTCCGACACTTAATTTATATAGTGTTCCGAACAAGCCACAGAGAAATATTGAAATTGACAAGAAGCGTGTGAGAAAAAGTGTAGATAAAATTGACAAAAAGCCGGATAGAAAGAATTTGGATAAAATTGACAGCACCTTCGGCAAtagTTATGCCAAAGAGATCAAGCTGGAAGAGGTGGATATAAAGCCACTGGAAGTGATACTATTGAAGATATCTGAGGACCCCTGTATATTCTGTGGCAGTATGGACAATCTGAGGAACTTGCATAGTAATAACATAGTGGATAATAATACGGAGAATTACATAGAAATGATTTTATCCTGCTTTAGTATAAAGTTGGTGGACCTCAGTGGCTGTGCCAGTCTGTGCGAGACTTGTGTGTCCCGTCTGAGGGACGCCGCCTCATTCCGGGCTCAGGTGGAGGCAGCGGGGGCACTCCTCCAACAGATCAAGGAAGAACCTACTAATTCTCCAACCCCGGCAATTCAGCAACAACCAACCATTGAAGaTAATTCATCAATGTATGAAGCGGGCGAAGATGTCGACACTACATTTACTTATGCTGATTGCAATACTCTGTTGGAATCAGGATCACGGGAGGTCCTCGAGATAACTTGGAGCGAGGACGAAGAAGCCGGTAGGAGACAGGGTCGGGTAGAATGGATCGATCAAATACCAAAATATCAAACAGTCAAAAGTGTTGAACCTAAAATGTTACAAGGATCGAACAAATGCACAGTTTGCAACAGGGAGTTTGTGTATCGATATAAATTGATAAAACACTTTCAAATTCACCTTCCGAAAGCTCTTTGTGAATTCTGCGGGAAGCAGTTCAAATTCATGCAGGGCTACAGAGAGCACCTGGGGATTCACTTGAAGGAACACCGGGTGTCCTGTCCGCAGTGCAACGCTTCGCTAGCGTCCAGGAACGGACTGTCAGCCCACATGAAGGCCACGCACCAAGGCAGGAAGCCGTTTATCTGCCCGCAGGGATGCCGAGACAGATTTGGGAACTTATATAAACGGAATGAGCACTTGTTGTTCAAGCACGGGGTGTGGTACGAGCGATACGAGTGTCCCGAGTGCTCACAGGCCTGCTATACATCTATAAAGTTAAACCAACACCTGAGGGCCGTGCACCGTAAGGAAAGGAACGTTGAGTGTCCGGAATGCGACAAAGTATTCTTTAGCCAATCTCATTTGAATAATCACTTGAGGACCCACTCCGATGTGAGGAACTACGTGTGTGACCTGTGCGGTAAGGCATTCAAGGATCGAAAAAATATCCGAAAGCACCTGAAGATTCACTACAACACCCGGGACAACCCGTGTCCCTTCTGCGAAGCAGCCTTCATCCAGACTACTTCGCTCAAATTCCACGTCAGAACTCACCACAAAGAAGTTGCATCCATCAGTAAAAGAACTAGGACAAATGAGGACACCAAAAAGCCTGAGATTGTGTACACTATTACCTATCATGAAGACGAGGGTAGAAATTTTGAagatgtaataatGTTACGCGCTGGTTCTATTCCAACACTTAACTTATATGGTGATCCGAACAGTTCAGAGAGAAATAGTGCAGATGAAATTGACAAAAATCACGAGGGAAATAGTCTAGGTGTAATTGACAACAAGCCGGATAGAAAAAGTCCAGATAAAATTGTCAACAAGCCGGATAGAAAAAGTCCAGATAAAATTGTCAACAAGCCGGATAGAAAAAGTCCAGATAAAATTGTCTATAATCCGGATAGAAAAAGTCCAGATAAAATTGTCAACAAGCCGGATAGAAAAAGTCCAGATAAAATTGTCTATAATCCGGATAGAAAAAGTCCAGATAAAATTGTCAACAAGCTGGATAGAAAAAGTCCAGATAAAATTGTCAACAAACCGAATAGAAAAAGTCTGGATAAAATTGTCAACAAGCCGAATAGAAAAAGTCTGGATAAAATTGTCAACAAGCAGGAGAGAAAGAGTCTAGATAAAATTGTCAACAAGCAGGAGAGAAAGAGTCTAGATAAAATTGTCAACAAGCAggagaaaataaatacagataTTATTGATAGCTACCTCAGCAAaagTTATGCAGACGAGATCAAGCTGGAAGAGATGGATTTAAAACCACTAGAAGTGGTACTATTGAAGCTATCTGAGGAACCCTGTATATTCTGTGGCAGTATGGACAATCTGAGGAACTTGCATAGTAATAACATAGTGGATAATAAAAAGGAGAATTACTTACAAATGATTTTATCCTGCTTTAGTATAAAGTTGGTGGACCCTAGTGGCTGTGCCGGTTTGTGCGAGATTTGTGTGTTCCGTCTGAGGGATGCCGCCTCATTCCGGACTCAGGTGGAGGCAGCGGGGGCACTCCTCCAACAGGTCAAGAAAGAACCCACTCTTCTCCAAACTCCGGAGCAACAACCAACCATTGAAGataATTCATCAATATATGAAATTGGCGAAGATGTCAACACTACATTTACTTATGCCGATTTCGATACTCCATTGGAATCAGGATCACAGGAGGTCCTCGAGATAACTTGGAGCGAGGACGAAGAAGCCGGCAGGAGACAGGGTCGGGTTGAATGGATCGACCAAATACCAAAATACCAAACAGTCGAAAGCGTCGAACCTAAATGGATACGAGGATTAAAAAAGTGCTCAGTTTGCGACCAGGTGTTTAAGAAATgtgacaaattgaaaaaacacttTGAACTTCACCTCCCGAAAACTCTGTGTGAATTCTGTGGGAGGCAGTTCAACTTTATGAGTTCCTACAAGGGGCACCTGGGGATTCATTTGAAGGAATACCGGGTGTCCTGCCCGCAGTGCAATGCTTCCCTAGCATCCAAGACAGGACTGTTAGCCCACGTTAAGACCAAGCACCAAGGCAAGAAGCTGTTTATTTGCCCGAAGGGGTGCAGTGAGAGATTCGGAACCCTGTATCAGCGGAATGAGCACTTGATGAAGAAGCATGGGGTGTGGTACGAGCGCTACGAGTGTCCCGAGTGCTCCCTCGTCTGCTATTCGCCTTGGAAGTTGGATACACACATGAGGGTGGTGCACCTTAAGGAAAAGAATGTCGAATGTCCGGAATGCGACAGAGTTTTCTTTAACAAATCCATGATGAGGCAACACTTAAAAACACATTCCAGTGAGTTCTTAATCTTGtttgtgaattattattattga
- Protein Sequence
- MTRDPKRLRVGSVPTLNLYSVPNKPQRNIEIDKKRVRKSVDKIDKKPDRKNLDKIDSTFGNSYAKEIKLEEVDIKPLEVILLKISEDPCIFCGSMDNLRNLHSNNIVDNNTENYIEMILSCFSIKLVDLSGCASLCETCVSRLRDAASFRAQVEAAGALLQQIKEEPTNSPTPAIQQQPTIEDNSSMYEAGEDVDTTFTYADCNTLLESGSREVLEITWSEDEEAGRRQGRVEWIDQIPKYQTVKSVEPKMLQGSNKCTVCNREFVYRYKLIKHFQIHLPKALCEFCGKQFKFMQGYREHLGIHLKEHRVSCPQCNASLASRNGLSAHMKATHQGRKPFICPQGCRDRFGNLYKRNEHLLFKHGVWYERYECPECSQACYTSIKLNQHLRAVHRKERNVECPECDKVFFSQSHLNNHLRTHSDVRNYVCDLCGKAFKDRKNIRKHLKIHYNTRDNPCPFCEAAFIQTTSLKFHVRTHHKEVASISKRTRTNEDTKKPEIVYTITYHEDEGRNFEDVIMLRAGSIPTLNLYGDPNSSERNSADEIDKNHEGNSLGVIDNKPDRKSPDKIVNKPDRKSPDKIVNKPDRKSPDKIVYNPDRKSPDKIVNKPDRKSPDKIVYNPDRKSPDKIVNKLDRKSPDKIVNKPNRKSLDKIVNKPNRKSLDKIVNKQERKSLDKIVNKQERKSLDKIVNKQEKINTDIIDSYLSKSYADEIKLEEMDLKPLEVVLLKLSEEPCIFCGSMDNLRNLHSNNIVDNKKENYLQMILSCFSIKLVDPSGCAGLCEICVFRLRDAASFRTQVEAAGALLQQVKKEPTLLQTPEQQPTIEDNSSIYEIGEDVNTTFTYADFDTPLESGSQEVLEITWSEDEEAGRRQGRVEWIDQIPKYQTVESVEPKWIRGLKKCSVCDQVFKKCDKLKKHFELHLPKTLCEFCGRQFNFMSSYKGHLGIHLKEYRVSCPQCNASLASKTGLLAHVKTKHQGKKLFICPKGCSERFGTLYQRNEHLMKKHGVWYERYECPECSLVCYSPWKLDTHMRVVHLKEKNVECPECDRVFFNKSMMRQHLKTHSSEFLILFVNYYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -