Basic Information

Insect: Limnephilus auricula
Gene Symbol: p38a
Assembly: GCA_951813805.1
Location: OX638390.1:35546992-35579818[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 7.5e-06 0.00044 21.2 0.4 3 23 471 491 469 491 0.97

2 8 0.0075 0.44 11.7 1.1 1 23 497 519 497 519 0.98

3 8 2.3e-06 0.00013 22.8 0.1 1 23 525 547 525 547 0.97

4 8 1.1e-06 6.5e-05 23.8 0.1 1 23 553 575 553 575 0.97

5 8 0.00012 0.0069 17.4 0.6 2 23 582 603 581 603 0.97

6 8 1.4e-06 8.2e-05 23.5 1.6 1 23 609 631 609 631 0.98

7 8 0.0033 0.19 12.9 0.4 1 23 637 659 637 659 0.97

8 8 9.8e-05 0.0058 17.6 5.2 1 23 665 687 665 687 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	7.5e-06	0.00044	21.2	0.4	3	23	471	491	469	491	0.97
2	8	0.0075	0.44	11.7	1.1	1	23	497	519	497	519	0.98
3	8	2.3e-06	0.00013	22.8	0.1	1	23	525	547	525	547	0.97
4	8	1.1e-06	6.5e-05	23.8	0.1	1	23	553	575	553	575	0.97
5	8	0.00012	0.0069	17.4	0.6	2	23	582	603	581	603	0.97
6	8	1.4e-06	8.2e-05	23.5	1.6	1	23	609	631	609	631	0.98
7	8	0.0033	0.19	12.9	0.4	1	23	637	659	637	659	0.97
8	8	9.8e-05	0.0058	17.6	5.2	1	23	665	687	665	687	0.98

Sequence Information

Coding Sequence: ATGTACAATGTGAAGGTGGCCATCAAGAAATTGGCCAGACCTTTCCAATCTGCAGTCCATGCCAAGAGGACCTACCGAGAATTGAGGATGCTGAAGCACATGAACCATGAGAATGTCATCGGACTGCTGGATGTATTCACTCCGGATGAGGGTCTGGCAGACTTCAACCAGGTGTATCTGGTGACCCACTTGATGGGGGCAGACCTGAACAACATCGTCCGGACTCAGCGGCTCTCTGATGATCACGTCCAGTTCCTCGTTTACCAGATCTTGCGCGGCCTGAAGTATATTCATTCTGCGGGAATTATTCATAGGGATTTAAAACCATCAAATATCGCCGTCAATGAAGACTGTGAACTGAAAATCCTAGATTTTGGTCTGGCCCGGCCAACGGAAAATGAGATGACAGGCTACGTAGCTACAAGGTGGTACCGAGCACCTGAAATAATGCTCAACTGGATGCACTACAACCAGACAGTGGACATCTGGTCTGTTGGTTGCATCATGGCCGAACTTATCACTGGAAGGACACTCTTCCCTGGCACCGACCATATCCATCAACTGAATCTAATAATGGAGGTGCTCGGAACGCCCGGTGCCGAATTCATGCAGAAAATATCCTCCGAATCTGCCCGAAATTATATTCAATCACTGCCTCCGTTGAAAAAGAGAGACTTCAAGGATGTGTTCCGCGGGGCCAATCGCCTGGCCATCGACCTCCTGGAGAAGATGCTGGAGCTGGATGCGGAGCGAAGGATCACAGCGGAGCAGGCGTTGGGCCACCCCTATCTCCAGCAGTACGCTGACACCAGTGATGAGCCCACATCGGCTCCTTACGATCAGAGCTTCGAAGATATGGAACTTCCAGTTGAGAAATGGAAAGAACTGGTGTACGGAGAAACAGTTACTTTTGTACCTCAACAACAGCCTTCAGGCCCAGAAGCCACAAAGCAGACTGAAAAGGTCTCAGAAAATGACGGTCTTCCTGGACTTTTGTGTCAAGCTTGTTTGGACTTGGTAAACAGACTTTATTATTTCAAGCAGCTTGTTCTAAGATCAGATGCAACGTTAAGACAATATGGACAAACTCAGGTCAAAAAGGAAAGCTTATCGGAGTTTGTGAGTGAGGCGCTCTCCACGAATGATGTGACGGAGAACTTGAGGGCGGACCTGTCCGTGGAGCACGTCCTGGCCATCAAGTCCCCGGCCTCGCTGCCCGACCTCCACTCCGACCTCGAGGACGCCTTCAGCAATGAAGACTACAATCAGACCAAGTCAAAAAAATGGCATTCTAGAATATGTCAATTCCATGGTAAACAAACTGACGATGTCATGCCAGAATGCTTGCCACTGCGGCTGCCAACCCCTGTTCACACCGAGTGCCGTGTTCCTTTCCAGCCGGACATAGCGTGCGCAGAGTGCGGAAAGCGCTTCACGAGCTTTAACAATCTGAACAGCCACACGCGCGTGCACACGGGCATCCGTAAATACAAGTGCAGCACTTGCTATAAAGACTTTGCTTATCTGAACGTGCTCAAGAACCACGAGCGGGCACACGCGGGCATCAAGAAGTACGTCTGCCACGAGTGCGGTGCCAAGTTCGTGCAACCGGCAAACCTAAAGGCCCATCTTATTCAGCACAACAGCGAGAAGCTTTATGCTTGCGACCAGTGCGGCAAGAAGTTCATCCAGCCCGGGAACCTGAAGATACATCTCATCCGGCACACGGGCGTCAAGAACATCCCCTGCACAGTGTGCGACATGCACTTCTACGTGAAGGGAGACCTCGATAAGCACATGCGATCTCACTCCGACAAGAAGCCTTACTCGTGCAAGATTTGTGACAAGGCCTTCAAGACTCAGAGCTTCTTGCTTGTGCATAATAGAACTCATACAGGCGAGCGTCCGTTTGCCTGCGACTTCTGCCCCATGAAGTTCATGGCCGCCAAAGACCTGAAGAACCACCGCATGACCCACACGGGTGAGAAGCCCCACAAGTGCTCGCTGTGCAGCCAGGCCTTCATACAGAAGTGCGCCCTCAACCGTCACATGAAGACTCACGACAAGCCCCAGTACATGCAACCCCTCCCCCACCCCAACTTGCACCCCCCTCCCCAACTGCCACCCGAATACCTCATGCAGAACTAA
Protein Sequence: MYNVKVAIKKLARPFQSAVHAKRTYRELRMLKHMNHENVIGLLDVFTPDEGLADFNQVYLVTHLMGADLNNIVRTQRLSDDHVQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARPTENEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELITGRTLFPGTDHIHQLNLIMEVLGTPGAEFMQKISSESARNYIQSLPPLKKRDFKDVFRGANRLAIDLLEKMLELDAERRITAEQALGHPYLQQYADTSDEPTSAPYDQSFEDMELPVEKWKELVYGETVTFVPQQQPSGPEATKQTEKVSENDGLPGLLCQACLDLVNRLYYFKQLVLRSDATLRQYGQTQVKKESLSEFVSEALSTNDVTENLRADLSVEHVLAIKSPASLPDLHSDLEDAFSNEDYNQTKSKKWHSRICQFHGKQTDDVMPECLPLRLPTPVHTECRVPFQPDIACAECGKRFTSFNNLNSHTRVHTGIRKYKCSTCYKDFAYLNVLKNHERAHAGIKKYVCHECGAKFVQPANLKAHLIQHNSEKLYACDQCGKKFIQPGNLKIHLIRHTGVKNIPCTVCDMHFYVKGDLDKHMRSHSDKKPYSCKICDKAFKTQSFLLVHNRTHTGERPFACDFCPMKFMAAKDLKNHRMTHTGEKPHKCSLCSQAFIQKCALNRHMKTHDKPQYMQPLPHPNLHPPPQLPPEYLMQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -