Basic Information

Insect: Limnephilus auricula
Gene Symbol: -
Assembly: GCA_951813805.1
Location: OX638391.1:456815-488203[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.44 26 6.2 1.2 1 23 156 179 156 179 0.95

2 11 0.0007 0.042 15.0 1.1 1 22 197 218 197 218 0.96

3 11 0.00031 0.018 16.1 0.5 1 23 319 341 319 341 0.98

4 11 0.0015 0.091 13.9 1.8 1 23 408 430 408 430 0.98

5 11 0.0083 0.49 11.6 7.6 1 23 438 460 438 460 0.95

6 11 3.6e-06 0.00021 22.2 0.3 1 23 466 488 466 488 0.97

7 11 0.27 16 6.8 0.3 9 23 584 598 582 598 0.92

8 11 1.3e-06 7.8e-05 23.5 0.7 1 23 604 626 604 626 0.96

9 11 4.3e-05 0.0025 18.8 0.8 1 23 632 654 632 654 0.99

10 11 1.1e-05 0.00066 20.6 0.2 1 23 660 682 660 682 0.98

11 11 7.7e-05 0.0046 18.0 1.1 1 23 688 710 688 710 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.44	26	6.2	1.2	1	23	156	179	156	179	0.95
2	11	0.0007	0.042	15.0	1.1	1	22	197	218	197	218	0.96
3	11	0.00031	0.018	16.1	0.5	1	23	319	341	319	341	0.98
4	11	0.0015	0.091	13.9	1.8	1	23	408	430	408	430	0.98
5	11	0.0083	0.49	11.6	7.6	1	23	438	460	438	460	0.95
6	11	3.6e-06	0.00021	22.2	0.3	1	23	466	488	466	488	0.97
7	11	0.27	16	6.8	0.3	9	23	584	598	582	598	0.92
8	11	1.3e-06	7.8e-05	23.5	0.7	1	23	604	626	604	626	0.96
9	11	4.3e-05	0.0025	18.8	0.8	1	23	632	654	632	654	0.99
10	11	1.1e-05	0.00066	20.6	0.2	1	23	660	682	660	682	0.98
11	11	7.7e-05	0.0046	18.0	1.1	1	23	688	710	688	710	0.99

Sequence Information

Coding Sequence: ATGGAGTTCGCAAGAGCCGACGATGCGATCAATATGCCCGCTTCCCTCCAGTGCAGGGCCTGCAGCAGTGCATGCAGTCTGCCGGACTTGCGGTTCATCTTCAGCGATTCTTCAGTGGTGGATCGACAGATTGCCGAGATGATGGCGTACGTCACAGGTCTTCAGATTGCCAGGAGCGACGGTCTCCCGGATCAGATATGTCGGGAATGCATCTCGCTGGCCGAGTCAGCGACCCTCTTCAAGGAGCAGTGTTGCCGGGCAGACGCTAACTTCCGGAGCCTCCTCGGCAAGGTCAGGGATGGCGGTCACTGCACCGGCATCAAGCGGGAGCAGGATTGCCCCCTGGAGATGGAAACTCAAGAGTATACTCCCCTGCCCAACTCCAGACACATCATTAAAGAGGACTCGATCGATTCGAGCGGGGTCGATGTGAATTCGCAGGAGGCGTCTGAAAGGGACGCTCCTTACCAGTGTGCTGTGTGCAGTCTTAGGTTTCTACTGTGCAGTAAACTCAAAGAACACATAAAGGGTGAACACGGAGACATACCCAAaagaaaaagtttgaaaatgaaagtGACCAAATCCAAATTTTCGTGTCCTCTATGTTCTAAAGCCTTCAGATCTTTGACGACATACAACTCCCACTATCGGAGATGTGAGAACAAAAGTTTACAACCAAAGAAGTccaaagagaaaaaaattaaagaggAAATGgttagcaGTGATAGTGACACCCCATTAGCAGAAAATTTACGCTTTGACGACCCACATTCTGACTCTGAAAGTATCCCGATGAAGGAATTACCTATTGAAACCATTGACAAAGTCTCCATTGATGATAATACGGTAATCAAAACAGAACATCAGTCCGTCCCTGCTCCCGCCGCCGCCGCCGCCCTTGCCCCAATTGAGAGCGATGAAATCAAATCtgaaattattaagaaaaacaaaagttaCACCTGCGAAGAATGTGAAATGTCATTTACTTGGAAAATGTTCACAGTACATATGAAGATTGAGCATTCTACGGACATAACGGAAAAGCCCGCCAAATATAGGAAAGGCTCAAAAAAATCTCACAAGAACAATGGAGTGCTAGAAAAAAAGAAATCCAAGAAAAGGAAACCTGAATCGAATGACCCGACAGTACAGATGGACATTATGTGGAATGGCGATGACAATAGTGGAGAAGATGGGAAAGATTTGAAGACCGCTGTGCCTTACTCTTGCACTTTGTGTGAAAGAAAATTCTCTAAAATGACAGCTTTATCGTTGCATTTGAAGAAACACGAAGACCAGCTGAGCGAAGTTCATTGTTGCCTCACCTGTAAAAGAGAATTTAAGAGGAAAGCGCATTTGGACAATCACATCCTGACACATTCGGTGGAAAAAGGCTTCAAGTGCAACCTGTGCGACAAGGCCTTCGCTCGGCAAGACAGCCTATCCATGCACATAGCCAATCACGAAGGAATCAAGAAACATCAGTGCAATTTCTGCGACAAAgTAGATGGATCTGACACCAACTCCGTTGTTTACATCTTGCGATGTGTTCCCGAGTCGAGATGCGGCATAATTTTGCCACGGTTACTAGTCCTAGCCGCCCGCCAAAGCGGCGAGCAGCAAGAGCGGCGGTGGTGGATTGCCGGCGTCGGCTGGATGGGCCATGGTGTTGGTGCGGGAGAGGGGAGCGGGAGATGCAAGTGGGAAATGCAGTACAGTGATGTGGTGGTGATGGGAAGAATTAATGCTAGTTTCAACATGCTGTCAACTCTGAAGGATCACATCAGGACTCACACGGGAGAAAAACCCTTCCTGTGTTCCATCTGCGGGCGCGGCTTCAGCCAGAGCACCAACCTCAAGGAGCATGTTCGGCGTCACCAGGGATATAAACCCTTCAAGTGCTCCTTCTGTGCTCAAACGTTTGTCTCGAAGGGTGAGCTGGAAGCGCACACTCGCAAGCACAGCGGCGCCCACCCGTTTGTGTGCGACGTTTGTGGCGGCGGCTTCACCACGTCCAGCTCACTGGTCAAGCACAAGCGCATCCACACGGGCGAGCGGCCCTACCAGTGCGACTTCTGCCCCATGCGCTTCACCGCGCTCGGCACGCTCAAGAATCACCGGCGGACGCACACTGGCGAGAAACCGTACAAGTACGTATTATTACTTCATCACGTCCAGCTCGCTGGTCAAGCACAAGCGCATCCATACTGGCGAGCAGCCTTACCAGTGCGACTTCTGCCCCATGCGCTTCACTGCGTCGGTGAGAAACCTTACAAGTACATATTAAAACTATTTGATCAATCATTTATTCCTTTAAGGGGGAATTTGCGTTAA
Protein Sequence: MEFARADDAINMPASLQCRACSSACSLPDLRFIFSDSSVVDRQIAEMMAYVTGLQIARSDGLPDQICRECISLAESATLFKEQCCRADANFRSLLGKVRDGGHCTGIKREQDCPLEMETQEYTPLPNSRHIIKEDSIDSSGVDVNSQEASERDAPYQCAVCSLRFLLCSKLKEHIKGEHGDIPKRKSLKMKVTKSKFSCPLCSKAFRSLTTYNSHYRRCENKSLQPKKSKEKKIKEEMVSSDSDTPLAENLRFDDPHSDSESIPMKELPIETIDKVSIDDNTVIKTEHQSVPAPAAAAALAPIESDEIKSEIIKKNKSYTCEECEMSFTWKMFTVHMKIEHSTDITEKPAKYRKGSKKSHKNNGVLEKKKSKKRKPESNDPTVQMDIMWNGDDNSGEDGKDLKTAVPYSCTLCERKFSKMTALSLHLKKHEDQLSEVHCCLTCKREFKRKAHLDNHILTHSVEKGFKCNLCDKAFARQDSLSMHIANHEGIKKHQCNFCDKVDGSDTNSVVYILRCVPESRCGIILPRLLVLAARQSGEQQERRWWIAGVGWMGHGVGAGEGSGRCKWEMQYSDVVVMGRINASFNMLSTLKDHIRTHTGEKPFLCSICGRGFSQSTNLKEHVRRHQGYKPFKCSFCAQTFVSKGELEAHTRKHSGAHPFVCDVCGGGFTTSSSLVKHKRIHTGERPYQCDFCPMRFTALGTLKNHRRTHTGEKPYKYVLLLHHVQLAGQAQAHPYWRAALPVRLLPHALHCVGEKPYKYILKLFDQSFIPLRGNLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -