Basic Information

Insect: Limnephilus auricula
Gene Symbol: lolal
Assembly: GCA_951813805.1
Location: OX638388.1:23352284-23363436[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00058 0.034 15.2 0.2 2 23 303 324 302 324 0.97

2 8 5e-05 0.003 18.6 4.6 1 23 330 352 330 352 0.98

3 8 5.9e-06 0.00035 21.5 0.5 2 23 361 382 361 382 0.98

4 8 1.4e-06 8.3e-05 23.5 1.1 1 23 388 410 388 410 0.99

5 8 3.4e-06 0.0002 22.2 1.6 1 23 416 438 416 438 0.98

6 8 4.2e-06 0.00025 21.9 0.3 1 23 444 466 444 466 0.97

7 8 4.5e-05 0.0027 18.7 7.4 1 23 472 494 472 494 0.97

8 8 2.5e-05 0.0015 19.5 3.6 1 22 500 521 500 521 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00058	0.034	15.2	0.2	2	23	303	324	302	324	0.97
2	8	5e-05	0.003	18.6	4.6	1	23	330	352	330	352	0.98
3	8	5.9e-06	0.00035	21.5	0.5	2	23	361	382	361	382	0.98
4	8	1.4e-06	8.3e-05	23.5	1.1	1	23	388	410	388	410	0.99
5	8	3.4e-06	0.0002	22.2	1.6	1	23	416	438	416	438	0.98
6	8	4.2e-06	0.00025	21.9	0.3	1	23	444	466	444	466	0.97
7	8	4.5e-05	0.0027	18.7	7.4	1	23	472	494	472	494	0.97
8	8	2.5e-05	0.0015	19.5	3.6	1	22	500	521	500	521	0.96

Sequence Information

Coding Sequence: ATGCGCAGTATGGCCCAAGATTGCGCTCTGGGGCGCTGGCTGGCGGAGGCTGCGCTAACACGACACTGGTATGACGTCACTCTCCAGGCCTCGGGGCGCCAGTACAGGGCACATCGGGTCGTGCTTTCCTGCGCAAGTCCCTTTATAAGgAGGCTGTTGCTGTCTCGGCCAAATGAAGATGTCCCGACTACGATTGTCCTCGCAGACTTTTCGTCAGAAACCGTTGAAGCCCTATTACAGTACGTGTACAGTGGAGAAGTCAGGCTTGCCCCGGACCATCTCGGTGGATTCATCGCTCTCGCGACGGCTTTACAAGTTCATATAGACAAAAAACATCTGGATGGCCTACGAGATTCTTATCATGAATTAATGGAGAACAGTAGTCGCAAAAAATATGAACTCACCTCAACAGATTTCCTTAATCCCAACTACAATCCGACCAGCATTTGTTATGCTCCAGAAAGTACTGTGAAGCCCACCGACTCAGATGAAATTTCTTCCGGATTGAGTATTCAACGATATCAAGCCGACAGATCAAACGACAGCAATAACAACTTTAGTATTAGCAACACTAATGTTCAACAAACTAATAGTACCGACTATGAAACTGAATCAATTCATGAGCATACGTCGGAAGCTCTTCATCAAACGGTCGAATCACGTTCCACAAGTATTCACAGACCAAATAAAAAGATGAAAACGATGCAACCACTCAAAGGCGGGGACTTTGAATTAAGTAAGATATTAAACGGGACAAAACAAGATACGGCGATGCCACTGGAGAAATCACTTGATGGGCTATCTTATATTAGTCCAATTTCTAATGAAAGCTTCCTTAGTGATGAGCCGGTTTTGACTGCCGTCAAAGTTGAATCCTCAATATTTTCCGAGGACTTGTGCGCTCTGAAGTGCGAGGTTTGCCTGAAGATGTTCACCTCGCGTGCCACGTTGGCCCTGCACGCCAGCACGCATGAGGCTCGTGCTCGGTATAAGTGCGAGCAGTGCGACAAGTGCTTCTCCCAGTTGCGGAACTACAAGTATCACGTGTCAGTGCACAAGGGCACCAAGGAATTTGCGGCCACGTGCAACGTTTGCGGAAAATACTTCAACGATCGAGGTTACCTGAGCAGCCATATGAAGATACACCgAAATCGCAAGGAGTACCAATGTCCGCACTGTCCGAAATCCTTCAACCAGAGAGTTGCCTACAACATGCACGTTCGTATTCATACCGGCGTAAAACCACACCAGTGCGAGGCATGCGGAAAGGCCTTCTCGCGCAAGATGCTCCTGAAGCAGCATGCGCGGACACACAGCGGGGAGAAGCCCTACTCCTGCGCGGCGTGCGGGAAGCGCTTCGCCGACCGGTCCAACATGACCCTGCACATGAGGCTACATTCAGGGGTCAAACCATTCTCGTGCACCCTCTGCCCAAAGTCCTTCACCAAGAAGCACCACCTGAAGACGCACCTCAATTACCACACGGGCAACAAGCCTTACTCCTGCTGCAAGTGCGGCCTCACCTTTAGCCAGAGCAGCAACATGCGCACCCACATGAAGAAGTGCGTGGCTCCGGACCCGGGGGAAAAACTGCTAGCGAATGGGCAGCTAGAAACGTGCTAG
Protein Sequence: MRSMAQDCALGRWLAEAALTRHWYDVTLQASGRQYRAHRVVLSCASPFIRRLLLSRPNEDVPTTIVLADFSSETVEALLQYVYSGEVRLAPDHLGGFIALATALQVHIDKKHLDGLRDSYHELMENSSRKKYELTSTDFLNPNYNPTSICYAPESTVKPTDSDEISSGLSIQRYQADRSNDSNNNFSISNTNVQQTNSTDYETESIHEHTSEALHQTVESRSTSIHRPNKKMKTMQPLKGGDFELSKILNGTKQDTAMPLEKSLDGLSYISPISNESFLSDEPVLTAVKVESSIFSEDLCALKCEVCLKMFTSRATLALHASTHEARARYKCEQCDKCFSQLRNYKYHVSVHKGTKEFAATCNVCGKYFNDRGYLSSHMKIHRNRKEYQCPHCPKSFNQRVAYNMHVRIHTGVKPHQCEACGKAFSRKMLLKQHARTHSGEKPYSCAACGKRFADRSNMTLHMRLHSGVKPFSCTLCPKSFTKKHHLKTHLNYHTGNKPYSCCKCGLTFSQSSNMRTHMKKCVAPDPGEKLLANGQLETC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00897957;
90% Identity: iTF_00897957;
80% Identity: iTF_00897957;