Laur026258.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638416.1:16029410-16061945[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.035 2.1 9.6 0.0 2 22 227 247 226 249 0.88 2 22 5.8 3.4e+02 2.6 0.1 1 12 257 268 257 275 0.90 3 22 5.7 3.4e+02 2.7 1.7 1 23 289 311 289 311 0.95 4 22 0.0019 0.11 13.6 0.1 1 23 329 351 329 351 0.98 5 22 6.9 4.1e+02 2.4 0.1 1 23 357 381 357 381 0.94 6 22 0.19 11 7.3 0.6 3 23 389 409 387 409 0.96 7 22 0.0039 0.23 12.6 0.3 2 23 414 436 413 436 0.92 8 22 0.28 16 6.8 0.1 1 21 442 462 442 463 0.91 9 22 0.0011 0.067 14.3 1.5 1 23 520 542 520 542 0.98 10 22 0.0017 0.098 13.8 1.8 1 23 548 570 548 570 0.99 11 22 0.13 7.4 7.9 0.2 1 23 576 599 576 599 0.92 12 22 0.00063 0.037 15.1 2.6 1 19 607 625 607 628 0.94 13 22 0.0049 0.29 12.3 1.7 1 23 651 673 651 673 0.97 14 22 0.005 0.29 12.3 0.6 2 23 684 705 683 705 0.95 15 22 0.00014 0.0081 17.2 0.2 2 23 725 747 724 747 0.96 16 22 6.6 3.9e+02 2.4 2.0 1 23 753 776 753 776 0.87 17 22 0.22 13 7.1 0.3 1 23 811 833 811 833 0.96 18 22 0.14 8.3 7.7 0.1 1 23 840 862 840 862 0.98 19 22 0.019 1.1 10.4 0.1 1 23 868 890 868 890 0.97 20 22 0.014 0.82 10.9 0.8 1 23 896 918 896 918 0.95 21 22 0.0006 0.036 15.2 0.7 1 20 924 943 924 944 0.97 22 22 0.99 59 5.0 0.4 1 23 953 976 953 976 0.94
Sequence Information
- Coding Sequence
- ATGGCCAGCAAAGACACCAAAATGGCGGAAAAAAAAACCAAGATGGCCACCAAATATATAAGCCCTTCAGAATTTGAGAATGTCTGTCGCGTTTGCTTGAAGCGACGCCGTTTAAAGTCGATATTTGCATATAAGATTACATCGCGCACGCCAGCAGAAGACTTGGGGTTTAAATTCAGGCAGTGTTCTGGATTGGAATGTAAACCTACAGATGGATTACCCGCCAAGATATGTCTTGGATGTTACGGAGCGCTGGTGGCTGCATACAATTTCaggaGGTTATGTGCGCAGTCCGCTGTAACACTTGAAAAGTCCCTAAAAGAGCATGCAGTGGATAATAAAAGCCACATTATTCTGCTGCCAACACCGAAcatcaaaaataacatcaattcTGAACAAAATTCTGATAAAACCATCAAAGAAGAAATTTCCGATGCCGATATTGAACTTTCGAATAATTGGACAGATGAACCAATGAGCGATTGTGAATTacagaaaattacaattaagaAATATAGGTTGCGGAAAACTGGAAAACGGAAATCCAAGGTTCGGAAATCATTGGACGAAAGTCTCTGTGAAGATGAAGAGATTTCTGAAATGAACATGAGTTTATCAGAACTACAGAAATATAATAAGGAAGAAAATTCTGATAGTATTGCAAACGAAGGTATTGTGAGCTGCCCCCGCTGCGATGCAAAGTTTGCGACCACCTCCGGGCTAGAGCTCCACACGGTGGAGGCGCACTCCTTCGAGGACGAGGCGGGCTACAGCTGCTACGGCTGCGACGCCGTGTTCCCCTCGGAGTTGGGACGGGCGCTGCATGAAGAAGGCTCCTGTCCCAACATGCGACCAGGCACCAAGTACTGCTGCAGaTTGTGCACAACAAAAGTGGATTCGCGCGCACAGTTCGATTCCCATCTCGAGGGGCACCGAGTCACTGATTTTACTGCACAGccGTCTCCATCCGTCAAGCAGCCGTTTTACCGCTGCCCCGACTGCCCGTACACCTCGAGGAATGCCGAGCAGGCCGCCGCGCACAGGCTGCGTCACCGCGGCCTTCGTCCTTTCTCCTGCCCGCGCGCTACCTGCGCATTCCGCACAGATGTACGCGCTTCTCTCAGACAGCACGCAGCCCGGCACAGTCGGCTCAAACCTTTGGCTTGTCCGCAGTGTCACTACAGGGCCAAGGGTCTCTCTAGTCTGAGGGGACATGTTAAACAGCATGGGACCTGGGATAAGTGCCAGATTTGCAACGCGTCATTTGACACGAAACAGCAGCTATTGGATCACGGCTCGTCGGAACATAGCGCTGTACAGTTCTTTGCTTGCCCACGCTGTGCTAAGTTCTTCACCGGTAAGGCTGTCTTCTCCAGACATGTGGAAACATGTTCTTACGTATCTGGaaacACAAGTGATACGATTGCAGATGACAAGTGTTTATCAACTGATGAAAAAGATATTTCGACTGCTGTCGTGAAAAACGATGCGCCAATTGAGAGAGATACGCACGTGTTAACTGAGTACGGTAAAATAATACGCACCGGTGAGGTACGCTACTCCTGCGATAGCTGCGATTACTCAACCCGATTGAAGCGATACCTCGCCTCGCACATGCGTAGTCACGAACCCGAACCCTCCTACAAGTGTCACATCTGTCCTTTCCGCAGCCGTTACGTGGAGAGCCTCAAGGCGCATGGACGGACGCACTCTCAACGATTACCGCACCAGTGCGTGCAGTGCGATGAAATGTTTCTCGATGAAACTATGCTACAAAAGCACGTAGCGCTGGTACATGACAAGCTGCCACTGCGCGATCACACTTGCAAATTCTGCGGAAAACAATTCACGCAAGTTGTACACCTAAAGAGGCATAGCTCTGTCTGCTCTGAAAGATTATCATCAAATGTTGATGTCGTGAAAGAAAAAGAAGACATTTCTATTGAACAGTTTGATTGTGAAATTTGCGGCCTGGCGTgccattcttcttcttccctGTATCAGCACGTTCTAAGTCATGCAGAGTCCGCACAGGTACCGCGCCCGCTCATGTGCGGCGCGTGTCCCTTTGCGTGCTCCACGCGCGCTGCTTTGCGCAGACATCGACGAGTCCACGCTGCGAAGAGACGCAAGGGGAAGCATGCTGCAAGGGATAAGGAGGTGAAGAAGCAGGAGTGCTCCATGTGCCAGCAGTCATTCCCGTCACGCGTGTCGTTAAGAGCCCACGTGAGATCGGCACACGCAGCGCTCATGCGCTACCAGTGCCCGTGGTGTGAAGCCCGCTACTGCAGCGGTGGAGGGTACTATCCGCACGTGCGCACGTGTCACAAGCGGCCCGCTTCACGGTCTGAACACGAAAATGGAGAaatGAAAAAAGACACAAAACCGCCACCCCCACGATCAAAGACGGCCAAGGGATCTATCTGTGCGTATGTTTGTGAGATCTGCGGACAAATTCTGGGCAGCAAGAACTCACACGCCATGCATATGAACCGTCACGCTGGCAAGCGACGCATGTACTCATGCGGACGCTGTCCCTACTCGTCAGCATACAGTGAGGCTATCCGGGCTCACCGTTTGCGACATGATGGACTCAAACCGTACGCATGTGACTCCTGTCCGTACCGCACCGACATGAAGAGCTCTCTGGCAGTGCATGCTCGTATGCACGCTGGGGATCTGAGGCACGCGTGCAGATTGTGCCCGTTTCGTGCCATCAACATCAGCAATCTGAAGAGGCACATGGCGAAGCATACGCAGGATAAACCTTATAAGtGCCAGCAATGTGACAAAAGTTACTTTGACAAGAAGTCTCTCTCGGACCACATTGCCTGCAAGCACGAGGGAGTCAAGCCTTATTCGTGCCCCCTGTGCGCAGTCCTCTTCAGCAGTCTCAAGGGGCAGCGAAGACACCTTGGGAAGTTCCATCCGGGGGCCCCTAAGGGGAGCGGTAGGGTGCCTTTTGAGGGACAGATAGAGGCAGGAAGTCAGATAGGGGAACAGATAGGAAGTCAGATTGATGGACAGATAGAAAGTCAGACAATGGAACAGATTGGAAGTCAGACAATGGAACAATTAAGGACACAGATAGGGGGACAGTTAGATACTCAGACAGAAGGTCAGTTAGGTACTCAGATAGGGGAACAATTAGATGCACATTTAGGGGAAGAGTTAGAGACTCAAATAGGGGGACAGTTATGA
- Protein Sequence
- MASKDTKMAEKKTKMATKYISPSEFENVCRVCLKRRRLKSIFAYKITSRTPAEDLGFKFRQCSGLECKPTDGLPAKICLGCYGALVAAYNFRRLCAQSAVTLEKSLKEHAVDNKSHIILLPTPNIKNNINSEQNSDKTIKEEISDADIELSNNWTDEPMSDCELQKITIKKYRLRKTGKRKSKVRKSLDESLCEDEEISEMNMSLSELQKYNKEENSDSIANEGIVSCPRCDAKFATTSGLELHTVEAHSFEDEAGYSCYGCDAVFPSELGRALHEEGSCPNMRPGTKYCCRLCTTKVDSRAQFDSHLEGHRVTDFTAQPSPSVKQPFYRCPDCPYTSRNAEQAAAHRLRHRGLRPFSCPRATCAFRTDVRASLRQHAARHSRLKPLACPQCHYRAKGLSSLRGHVKQHGTWDKCQICNASFDTKQQLLDHGSSEHSAVQFFACPRCAKFFTGKAVFSRHVETCSYVSGNTSDTIADDKCLSTDEKDISTAVVKNDAPIERDTHVLTEYGKIIRTGEVRYSCDSCDYSTRLKRYLASHMRSHEPEPSYKCHICPFRSRYVESLKAHGRTHSQRLPHQCVQCDEMFLDETMLQKHVALVHDKLPLRDHTCKFCGKQFTQVVHLKRHSSVCSERLSSNVDVVKEKEDISIEQFDCEICGLACHSSSSLYQHVLSHAESAQVPRPLMCGACPFACSTRAALRRHRRVHAAKRRKGKHAARDKEVKKQECSMCQQSFPSRVSLRAHVRSAHAALMRYQCPWCEARYCSGGGYYPHVRTCHKRPASRSEHENGEMKKDTKPPPPRSKTAKGSICAYVCEICGQILGSKNSHAMHMNRHAGKRRMYSCGRCPYSSAYSEAIRAHRLRHDGLKPYACDSCPYRTDMKSSLAVHARMHAGDLRHACRLCPFRAINISNLKRHMAKHTQDKPYKCQQCDKSYFDKKSLSDHIACKHEGVKPYSCPLCAVLFSSLKGQRRHLGKFHPGAPKGSGRVPFEGQIEAGSQIGEQIGSQIDGQIESQTMEQIGSQTMEQLRTQIGGQLDTQTEGQLGTQIGEQLDAHLGEELETQIGGQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -