Laur022529.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Limnephilus auricula
Gene Symbol
-
Assembly
GCA_951813805.1
Location
OX638411.1:22962693-22974740[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 1.4e-05 0.0008 20.4 0.9 1 23 376 398 376 398 0.97
2 25 0.041 2.4 9.4 1.5 1 23 404 426 404 426 0.97
3 25 0.011 0.64 11.2 1.0 1 23 434 456 434 456 0.97
4 25 1.7 1e+02 4.3 2.2 1 23 462 484 462 484 0.96
5 25 0.78 46 5.4 2.4 1 23 490 514 490 514 0.96
6 25 0.00018 0.011 16.8 1.7 3 23 522 542 520 542 0.97
7 25 0.21 13 7.1 0.2 1 23 548 570 548 570 0.97
8 25 0.0032 0.19 12.9 2.2 1 23 576 598 576 598 0.97
9 25 0.00041 0.024 15.7 1.4 1 23 604 626 604 626 0.96
10 25 0.0016 0.097 13.8 3.3 1 23 632 654 632 654 0.98
11 25 9.3 5.5e+02 2.0 5.0 1 22 660 681 660 682 0.90
12 25 0.0097 0.57 11.4 1.7 1 23 688 710 688 710 0.98
13 25 0.007 0.41 11.8 1.2 2 23 717 738 716 738 0.97
14 25 0.0033 0.19 12.9 4.4 1 23 744 766 744 766 0.97
15 25 0.094 5.6 8.3 2.8 2 23 773 794 772 794 0.95
16 25 6.6 3.9e+02 2.5 0.0 1 23 800 822 800 822 0.92
17 25 0.00075 0.044 14.9 1.3 1 23 828 850 828 850 0.96
18 25 0.0025 0.15 13.2 0.4 1 23 856 878 856 878 0.94
19 25 0.57 34 5.8 0.2 1 23 884 906 884 906 0.97
20 25 0.0017 0.1 13.8 0.2 1 23 912 934 912 934 0.98
21 25 0.0017 0.1 13.8 2.9 1 23 940 962 940 962 0.98
22 25 0.11 6.6 8.0 2.5 1 23 968 990 968 990 0.96
23 25 0.12 7.2 7.9 3.2 1 23 996 1018 996 1018 0.98
24 25 0.59 35 5.8 3.9 2 23 1025 1046 1024 1046 0.95
25 25 0.014 0.85 10.8 3.3 2 23 1052 1073 1051 1073 0.96

Sequence Information

Coding Sequence
ATGTCAAATGAGTGTGTAGTGGAGGGCTGTGAGAGCTTACGGCTCAGAGATAAATACCTCTTCTTTAGATTTCCTTCTGCATTTATTGCTGAAGGGGTTTTGAATCCGATTTTTTCCGAGAGGCGAAAGAGATGGATTCTTGCCGTGAACCGAAGTGATATCTCGGAGGAAGATTTTAATAATGAACGAATCTGCTCCAAGCACTTCGTCAGAGgTAAGCCCAGTGACTCTGAGGATGTGACCAGCGTAGACTGGGTGCCCAGCCTGAGTATGGGGCCAGGGCTCCCGTGTAATGGAGATGTTCACTCCGAAGACAGCATGGATAGTGTAGATATGGCCATCAATATGAGTGCCAAGGaatacaatcaagacatcctcCCTGTGGAATTCATCAAAAATGAACCGCAAGATTACTCGGACGAGGATGAAAGTGAAATAAACCGCCATTACAACGCTAAAACAAACAGTGATCTAAACCATAATTCTCCCCACCTCGACACAACTGTTATAAAAGATGAGCCAAAAGATGACTACAACTATACACAAAATGAAAACATAGCCGGTGTATTTAAACCTTCAGAGATATCAAACAAAGCAAATGAAACCACCAACCCAAACTTGTCTGCAGACACATCTTACagagaaaatgttattaacaATCTATTTCCAACACCTTCAGAAGAAAGCTTCAACCACCATTATGTGCCATCTGATTTTTCCGAACTCACGCAAAAGATTAAAGAAGAATTACTCGAACCACCAGAGTGTGATATTGCCGGAGACTCGCAAATCTGTGATGATACTTTTAATACCAACGCTTTTAATAACTCTTGCAATGAGGTTCATATTAAAACTGAATGTGAATTTAGCAATGATGCCATGGATCTTTCCACTGTCAAAAAAGAACCACAATCCCTCATACCACCGCCATATTTTAGCATGATGCAACAGTACTTACAAAATGACGGATTTCCCAGTGTGCCAATTGAAGTTTCGGATGTTAGACACAGAAAGAAACTATCTAAGAAACGGAAGAATAAACATAGGGAATACAATGATCCAACGTACACTTCCTATAAAGCTCCggctgtaaaaaaaatcaagagaGACAAGAATGCAAAACCTTACGAGTGTCCCCAGTGCGATCTCAAATTCAAAATGAAGTCTTATTTAATGCGACACCAAATATTACACAACGCTGAGAAACTGTTTGAGTGCGACGAGTgtgaatttaaaactaaaatgcaGAGGTATCTAACTCAGCATAAGCTAATACACGTTCAGTCCGACAAGAAGCCGTTTGTTTGTGATGTTTGCGGTTGTATTTTGAGTTCTGATCGGTCCTTGAAGAAGCATAGACAAGGCCATGCCGGTAATAAGCCGCATGTTTGTGATATTTGCAATTTTGCGAGTCGTTGTTCGGCGTCATTGAAATTACATCGCTtaattcacagtggagaaaagccgtTTTCTTGTCCGCATGAAGGGTGTGCGTTCACGTGTCGCGAAGCCAAGTATCTCAAGAAGCACGAGCTGGTTCATACTGGAGAGAAGCCTATCGCTTGCGATGAGTGCGATTATACCTGCCGCACGTCCGCTAGTCTCAAAATACACAAGCGAAAACATTCTGGAGAGAAGCCGTTCGTTTGCGAAATCTGCGCTTTCGCTTGCCGGGAGATGGTCGTACTTAAAAAACACATGATTGTTCATACTGGCGAAAAACCGTTCTCTTGTACTGTTTGTCCGTACGTCTGTAGCAGGATGACGAGGTTAAGGAATCACATGCTGCTTCATACGGGAGAGAAACCATTCAAGTGCCCGCAATGTCCGTACGCGTGTCGAGACTCCAACCAACTCAAGCAGCACTCCATCATCCACACAGATCTGAAACCTTTTGTATGCGACATCTGCGATTTTGCTTGCAGAAGAAAAAAGGTgttgaaaaaacataaacttaCCCACGAAGAACAATACGCACACAAATGTAAAAGATGCAAGTTTAGTTGCGAAGACGAGAATGAATTCAAAATCCACAATGACGCCCACGAGGCCGAGTTGAtctataaatgtatgtattgtgATTTCAGAAGCGAAGACAACATTAAACTCGAAAAACATCAATCTCGCCACAAGGAATATAAGCCGCAGGTTTGCGAATTTTGCCCTTACACGTGTAAACTGCCGTCAAATATGAAGCTTCATGTAATGACTCATACCGGCGAACGGCCTTTCGCTTGCAACTTGTGCAACTACCGATGCACCAGAACCAACTCACTCAAGAGTCACCAACTTACGCACTGCATGGAAAAGCGACTTTCTTGCGCCGAATGTGGATGTCCAACACGCACTCAAAAGCATCTCGATGTTCATAAAAACCAGCACGATCAAGGAGAACCGTTTAGCTGTGAAGATTGTTCATTTATTGCTGAAAGCGCCGCTGAAATCATCGAACACACTTTTACACATTTGACGGATAAATTATACGCTTGCGATCAATGTGGCCACTCGACAAAAACAGCATCTggattgaaaaatcacaaattacaGCACATAGCCGAACGTCCATTCCCCTGTGATACGTGTGACTACAGAGGAAAGTCTCGTGCCAATCTCCGAAGACACGGCTACATCCACATACAAGACAAACTCTACAATTGCGATCAGTGTCCTTTCTCCGCCATGCTACCCAGCAAAATGAACGAGCATTATCGCATACATACGGGCAATCTAAAATACAAATGTAGCGAATGTGGCTACGCATCTAACCTGAAAGTTAAGCTCGAACGCCATGTTTTAATACACACAGGAGAGCGTCCGTTTTGCTGTGATATCTGCTCGTACACCGGGCGATCGCCTGACACTTTACGCACGCATAAACGGACGCACACGGATGATAAACCTTTCTCCTGCGATCAGTGTGAATTCACAACGAAACACCGCAAAGATTTAGTCAGTCATAACCTTATTCACACGGGCGAGAAGCCATATTCATGCGACGAATGCTCGTTTAAATGTCGTTTGCTCTCTAAGTTAAATATTCATAAGCGCGGTCATTCGGAAAGCAACACTTTATCTTGCAAATACTGCGATTTTCAGTGTAGTCTGCATTACGTCCTGCGGCAGCATATGATTGAGCATTTGGGCGAGCCGATGAAATGTAATTCATGTGACTATTCGTGCAGGACACGACGCGCTATGAAGAGACATCTGTTGGCGCACGGCAGAGCTAAAGTGGAATCGTTTATCCGACCCGACGTGGAAGATTTTGAAGAAACATACAGCTAG
Protein Sequence
MSNECVVEGCESLRLRDKYLFFRFPSAFIAEGVLNPIFSERRKRWILAVNRSDISEEDFNNERICSKHFVRGKPSDSEDVTSVDWVPSLSMGPGLPCNGDVHSEDSMDSVDMAINMSAKEYNQDILPVEFIKNEPQDYSDEDESEINRHYNAKTNSDLNHNSPHLDTTVIKDEPKDDYNYTQNENIAGVFKPSEISNKANETTNPNLSADTSYRENVINNLFPTPSEESFNHHYVPSDFSELTQKIKEELLEPPECDIAGDSQICDDTFNTNAFNNSCNEVHIKTECEFSNDAMDLSTVKKEPQSLIPPPYFSMMQQYLQNDGFPSVPIEVSDVRHRKKLSKKRKNKHREYNDPTYTSYKAPAVKKIKRDKNAKPYECPQCDLKFKMKSYLMRHQILHNAEKLFECDECEFKTKMQRYLTQHKLIHVQSDKKPFVCDVCGCILSSDRSLKKHRQGHAGNKPHVCDICNFASRCSASLKLHRLIHSGEKPFSCPHEGCAFTCREAKYLKKHELVHTGEKPIACDECDYTCRTSASLKIHKRKHSGEKPFVCEICAFACREMVVLKKHMIVHTGEKPFSCTVCPYVCSRMTRLRNHMLLHTGEKPFKCPQCPYACRDSNQLKQHSIIHTDLKPFVCDICDFACRRKKVLKKHKLTHEEQYAHKCKRCKFSCEDENEFKIHNDAHEAELIYKCMYCDFRSEDNIKLEKHQSRHKEYKPQVCEFCPYTCKLPSNMKLHVMTHTGERPFACNLCNYRCTRTNSLKSHQLTHCMEKRLSCAECGCPTRTQKHLDVHKNQHDQGEPFSCEDCSFIAESAAEIIEHTFTHLTDKLYACDQCGHSTKTASGLKNHKLQHIAERPFPCDTCDYRGKSRANLRRHGYIHIQDKLYNCDQCPFSAMLPSKMNEHYRIHTGNLKYKCSECGYASNLKVKLERHVLIHTGERPFCCDICSYTGRSPDTLRTHKRTHTDDKPFSCDQCEFTTKHRKDLVSHNLIHTGEKPYSCDECSFKCRLLSKLNIHKRGHSESNTLSCKYCDFQCSLHYVLRQHMIEHLGEPMKCNSCDYSCRTRRAMKRHLLAHGRAKVESFIRPDVEDFEETYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-