Basic Information

Insect: Limnephilus auricula
Gene Symbol: L
Assembly: GCA_951813805.1
Location: OX638390.1:9268252-9273916[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.8e-05 0.0016 19.4 0.2 1 23 10 32 10 32 0.98

2 19 7.7e-06 0.00046 21.1 0.2 1 23 56 79 56 79 0.94

3 19 0.00079 0.047 14.8 0.8 1 23 161 184 161 184 0.96

4 19 0.059 3.5 8.9 0.0 2 23 194 216 193 216 0.93

5 19 0.1 6 8.2 0.1 3 23 255 275 254 275 0.98

6 19 0.001 0.062 14.4 0.0 2 23 283 304 282 304 0.92

7 19 0.0012 0.07 14.2 0.1 3 23 314 335 312 335 0.94

8 19 0.031 1.8 9.8 0.1 1 23 340 363 340 363 0.92

9 19 0.041 2.4 9.4 2.8 1 23 433 455 433 456 0.96

10 19 0.00098 0.058 14.5 1.5 2 23 530 551 529 551 0.96

11 19 0.015 0.88 10.8 0.1 1 23 561 583 561 583 0.97

12 19 3.7 2.2e+02 3.3 3.5 3 23 592 612 591 612 0.96

13 19 0.64 38 5.7 0.1 1 13 665 677 665 678 0.93

14 19 0.018 1.1 10.5 0.6 2 23 713 735 713 735 0.96

15 19 0.99 58 5.1 0.1 1 23 739 761 739 761 0.95

16 19 0.11 6.6 8.0 0.1 2 23 768 789 767 789 0.95

17 19 0.0016 0.096 13.8 0.3 1 23 797 819 797 819 0.97

18 19 0.42 25 6.2 0.8 1 23 826 848 826 848 0.93

19 19 0.0083 0.49 11.6 1.0 1 23 902 924 902 924 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.8e-05	0.0016	19.4	0.2	1	23	10	32	10	32	0.98
2	19	7.7e-06	0.00046	21.1	0.2	1	23	56	79	56	79	0.94
3	19	0.00079	0.047	14.8	0.8	1	23	161	184	161	184	0.96
4	19	0.059	3.5	8.9	0.0	2	23	194	216	193	216	0.93
5	19	0.1	6	8.2	0.1	3	23	255	275	254	275	0.98
6	19	0.001	0.062	14.4	0.0	2	23	283	304	282	304	0.92
7	19	0.0012	0.07	14.2	0.1	3	23	314	335	312	335	0.94
8	19	0.031	1.8	9.8	0.1	1	23	340	363	340	363	0.92
9	19	0.041	2.4	9.4	2.8	1	23	433	455	433	456	0.96
10	19	0.00098	0.058	14.5	1.5	2	23	530	551	529	551	0.96
11	19	0.015	0.88	10.8	0.1	1	23	561	583	561	583	0.97
12	19	3.7	2.2e+02	3.3	3.5	3	23	592	612	591	612	0.96
13	19	0.64	38	5.7	0.1	1	13	665	677	665	678	0.93
14	19	0.018	1.1	10.5	0.6	2	23	713	735	713	735	0.96
15	19	0.99	58	5.1	0.1	1	23	739	761	739	761	0.95
16	19	0.11	6.6	8.0	0.1	2	23	768	789	767	789	0.95
17	19	0.0016	0.096	13.8	0.3	1	23	797	819	797	819	0.97
18	19	0.42	25	6.2	0.8	1	23	826	848	826	848	0.93
19	19	0.0083	0.49	11.6	1.0	1	23	902	924	902	924	0.99

Sequence Information

Coding Sequence: ATGAAGACCCACGACAACCAGAAACCGTTCCAGTGTACTGTGTGCAACCGCGGCTACAACACGGCGGCCGCACTTACCTCGCACATGCAGAACCACAAGCGGGCGGAGGGCGGGGGAGGGGGCGGGGGCCGCTCTCCGCTGAGGGGCGGTGGTCCTGGTAGGGGGTACAGGTGCCTGCAGTGCGGGGAGAGATTCAGGAGACCAGATCTACTACAGAGTCACATGACTGCAGTCCACTCGTCAGATGTGAGTTCATCGGGCAGTCCTCGCGCCCCGCCTGCCTTGACTCCCCCATCTCCTCGACCTCGCTCCATCAGCCTGCCCAAGCTGGCCTGCATGTACTGCACACGGGACACCTTCACCACCATGGAGCAGCTGCAAGGTCACGTCCACTCCATGCACTCTGCTCTGCTTCCACCGCCACCGCCGCTACTTCCGGAGCAGAACGGCTTAACGCCTGTCCAATCACCGGTTCTGACGTATTCTTGCGATTCTTGCACCATGCGCTTCCCCTCGAGTTCTTCCTTGCATCAACACATCGCTTCGGCTCATTCGAAGTTGAGTCCGCGCTCTCCTTTGTCCTGCAACTTGTGTTCTATACCATTTGCGTCGCCAGCTGGGCTTGCGGAGCATTATCTACTCGTGCATGGAGGACCATCGGAGCAACTCCGTCCTACTGATCTGAGCAAGAAGACTACTGTAGACCGTCCAATGAAAAGACCGAGAAGTGGAGAAGATCCCATGGCTGCTGGGACTTTGTTGTGCAATCAATGTGGTGCGGCTCTCCCGGATTTTGAGTCGTTCCGCGTTCATTTGCGTGCCCATTTGGAAGGAGGTGCATGTCTCTCTTGCTCCACGTGTGGAGCGCGTTTCTCTGACGCCGGTGCTCTGGAGCGGCATGCTGCGGCCCATCTGCTGGCGCTGGGGGCAGAGTTCGGCTGCCCGAGCTGTTCGCGTGCTTTTCCGAAGCCTGATGAACTTCAGAAACATTTGATGGATCTTCACGCTCATCACCTGTATCGTTGTGCAATCTGCAAAGAGATGTTTGACTCCAAAGTTGCAATACAGgtacattttGCCGTAAAACACAGCCATGAGTGCAAGGTCTACAAGTGCACAGCCTGCGCCTCCCCAGCCGCCACGTTTCGCTCCGAGGCCGAGTTCACGCTGCACGTGCGCGGGGTGCACGCGGGAGTAGGCACGGCTGCAGCGGGTGCGGCGCGCTGCCCCTACTGCCACGCGGCGTGCGCCACGGACCTGGAGCTGCAATTCCACCTCGCCGCCCACGCGGAGCAGTACCGCTGTCCGCTCTGCCGGGAGGGATTCCACGTGGAGTTCTTGCTTGATAAGCACATGCAACAACACCACCAACAGagTATCAACGGTGACAGTCCAAAGCCGAAACAATCACCCACTAGTCGAGTAAGTGTGAAAACTCTACCAACGGAAAACAATAACACCAAAAAGGAAGCAAATATATGCGACATCTGTGACAGGAGCGATTTTCATTCCGAAAATGAAGTACTCGCCCATCGTAAGTTGGCTCACCACGTCAAAGGGGCTGCTAAAAATGGAGCGGTTAGTCTGAGTTGTGCTTACTGCAGCGAAAATTGCAAGTCGAGGGCAGAGTTGGAAAATCACATGAAGAGTCACTCCCAGGGAAGTGCTACTGGTGGCAAGCACAAGTGCCTCATCTGTGATGAAGTGTTTCCTTCTTCCGCAATACTTGCGGAACATAAACTGACACATTGTAAAGTTCTCGGTGGCAACAACTGTACACATTGTAAAACGCTTCTTACTACAGAGGAACAATTCTTTTCACATCTTTCGCAGCACTCTAATAACAATAATGCACCAAGCAGTCCTCATTCTCCGACACCTCTCAACTTGCCGACATCTTGCGTAGTCTGTCGCCAAACTCTTGTATCCGATGTTGAAGCAAGAATTCATGCTAGATTCCACTTGAAGAATTCAGGTTTATCACCTGATCATTTTCAGTGTGCCCTCTGCTTAAAGTCGTTTTCACAACAAGAGGTCATACCCACAGGAGCTGAAGTTAACAATGGAATACCCACAACTCACGTGTGCAGAGAGTGCTATAGGCAACACAGCGGTGCGGTTGCGGCGACGGAGCGTAGGTGTGGGGAATGCCACATGAAGTTTGAATCGACTTCGGCATTGGACAGCCACGTGGAAACCGTTCATAGAAAAACTTACACATGCATCGAGTGTCAAGCCACCTTTGAATCTGAACAAGAAGTTCGTGTGCACGTACAGGCTCACGTGTCAGGGGGTGGATTGGAGTGTCGGCTCTGTCGTCGCTCCCTCGGCTCTCCCATGCAGTTGCAAGCTCACTTGATCGAACACACTTTCGCAGGTTGTGGAGGCTTCACTTGCTACTTGTGCTCTGCCGTGTTCACGGCAGCTTCGGGACTGCAGCACCACATGCTGGCCCACGGACTCGCGGCCCGCCCTTATGACTGCGCAAGGTGTGGATTGAAATTCTTCTTCAGAGCCGAACTGGATAACCACAGTTATTCTCACCTCGAGGACGACGTCAGGATGAAACTAGCCGATTCTGATTCTCTGAAGCATTCCTACTTCATGGGACAAAATGGTTTTCACGGAATCGACAGTGTTGCATTTTACACTTCAACATCACCTAGTTCCAAAAAAATGAAGGTTTCCAATAGTCCTGGTCCGTATAAATGTTCCGAATGTCCTGCAGATTTCAACAACATGCTCGGACTACATGCTCATAAACGAAAGCACAGCGCAGAAAGGGAAAGCGCAACTCCGGAAGTAACTCAAGTTAAAAATGAAGACATTGCTGTGAAACAAGAAGCGGAAGAAAAAGGGGACGAGTACATAGAAGTGAGTTCTCCAATAGCGAAGCCTGAAAATAACGGAAACTTGGCTGAAGACCTCAGTGCTTCCAACGGAAGCACCCCGCTCTTGAGTCCGAAAATAGAAACACTCGAAGAATGA
Protein Sequence: MKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKRAEGGGGGGGRSPLRGGGPGRGYRCLQCGERFRRPDLLQSHMTAVHSSDVSSSGSPRAPPALTPPSPRPRSISLPKLACMYCTRDTFTTMEQLQGHVHSMHSALLPPPPPLLPEQNGLTPVQSPVLTYSCDSCTMRFPSSSSLHQHIASAHSKLSPRSPLSCNLCSIPFASPAGLAEHYLLVHGGPSEQLRPTDLSKKTTVDRPMKRPRSGEDPMAAGTLLCNQCGAALPDFESFRVHLRAHLEGGACLSCSTCGARFSDAGALERHAAAHLLALGAEFGCPSCSRAFPKPDELQKHLMDLHAHHLYRCAICKEMFDSKVAIQVHFAVKHSHECKVYKCTACASPAATFRSEAEFTLHVRGVHAGVGTAAAGAARCPYCHAACATDLELQFHLAAHAEQYRCPLCREGFHVEFLLDKHMQQHHQQSINGDSPKPKQSPTSRVSVKTLPTENNNTKKEANICDICDRSDFHSENEVLAHRKLAHHVKGAAKNGAVSLSCAYCSENCKSRAELENHMKSHSQGSATGGKHKCLICDEVFPSSAILAEHKLTHCKVLGGNNCTHCKTLLTTEEQFFSHLSQHSNNNNAPSSPHSPTPLNLPTSCVVCRQTLVSDVEARIHARFHLKNSGLSPDHFQCALCLKSFSQQEVIPTGAEVNNGIPTTHVCRECYRQHSGAVAATERRCGECHMKFESTSALDSHVETVHRKTYTCIECQATFESEQEVRVHVQAHVSGGGLECRLCRRSLGSPMQLQAHLIEHTFAGCGGFTCYLCSAVFTAASGLQHHMLAHGLAARPYDCARCGLKFFFRAELDNHSYSHLEDDVRMKLADSDSLKHSYFMGQNGFHGIDSVAFYTSTSPSSKKMKVSNSPGPYKCSECPADFNNMLGLHAHKRKHSAERESATPEVTQVKNEDIAVKQEAEEKGDEYIEVSSPIAKPENNGNLAEDLSASNGSTPLLSPKIETLEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00675316;
90% Identity: -
80% Identity: -