Laur021509.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638410.1:14416844-14440301[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.3e-05 0.0013 19.7 0.2 1 23 163 185 163 185 0.95 2 10 0.00021 0.013 16.6 0.9 2 23 190 211 189 211 0.96 3 10 0.0012 0.069 14.3 0.4 2 23 219 241 218 241 0.94 4 10 3.4e-05 0.002 19.1 4.0 1 23 246 268 246 268 0.97 5 10 0.016 0.94 10.7 8.3 2 23 277 298 276 298 0.97 6 10 4e-06 0.00024 22.0 1.3 1 23 304 326 304 326 0.96 7 10 4.6e-07 2.7e-05 25.0 1.0 1 23 331 353 331 353 0.98 8 10 8.9e-05 0.0053 17.8 0.5 1 21 359 379 359 383 0.93 9 10 1.2e-05 0.00073 20.5 3.7 3 23 444 465 442 465 0.95 10 10 0.00016 0.0097 16.9 1.9 1 23 471 493 471 493 0.95
Sequence Information
- Coding Sequence
- ATGACTATTAGCTGGGAGCGCGCACTCGCGCAGACGTGTTCATTGCCGAGAatCTATCCCGAACCTGATTTACCTGAGAAATTATGCACGGCGTGTATTGCCCTCACAGAATTGGCATACTCCTTCAAACGGCAAGTTCTGGCCTGCGATAAATCTTTGCGAGACCATTTCAACCAACAAAAGAAACTACTTCTCAGTGTTCCTGATAGTATTCCTGAATGTATCGACCCCCTGAAATCTGACTTTGAACTGAAGGAAGCTGACTTCCCTCCGTTGAACTTATGCTCAGGAAGTTCCCCGGGCAGTTCCTCCGCCCCCTTTGAGGGATGTGACAGAATGCATACTGAATGCCAAAGCAACTCTATCCTCTGTCCCAGTGGTACAAAGATTTGTAGGAAAATCAAACCTTACAAGAAAATAGAACACAGCACAGCTCCATCTCAACCAAAaacTCATGTGAGAATTAAACATACCAAGGAGAGAGCTTTTCCGTGCCCCCTGTGCCCCAAGACTTTTGTGGAGAAGAGAGCTCTGAATCGTCACAAGTTAGCTCATAGGAAGCAGCTTTCGTGCCATATTTGCAGTATGACATTTGGCTACAGGAATGCCCTGACGGCCCACCTGAGATTGCACACTCCCACTTCCAACACGATACCATGTCTGCAATGTGAACAAGTATTTAAAGATGACTTTCAACTGAAACGACATAAGAGATTGGCACACACAGGCGAGACCCATTCATGCCCCTCTTGCAGCAAGGTGTTTTCGCACAGTTCTCGATTGCGTCGCCACCTGCTGGTTCACCGCGGCGTGGAGCAGCGCCGCTTGCAATGCCAGTTCTGCAGCCGCCGCTTCAACCACACGCACCACCTTGCCAGCCACGAACGCACGCACACGGGAGTCAAGCCGTATCTGTGCGCCAAGTGCGGAAAGGGTTTTACGCAGTCGGTTCATTTAACCATCCACCTTCGTCAACATGAAAATGTTCCCTTTTCCTGTGAACTATGCGGCAACACTTTTCCAAGAAAAAATAGTCTTGAACGCCACATGAAGACACAttcagTAATAAATCAATATTCATGCAGCATCTGTGACCTAAAATTCCCCACTGAAGCCAAATTACAGAAGCATATGACGTTTATAAATCACCATAACTCTCCAATTATCATTGAATTCAGCGAGACTGAGAAGAAAAGCAATATTCCTCAATTACCTGTGGAAATAGATGCTTCTGGTTACACTGAAATTATTTCTGACAATACGGAAAAGAGACCAATAATCAtccatagaaaaattaaagaggATTTGGATAATATCAAGCGCCATCTATGTTCTGACTGCGGGATGAGTTTCAAACAGAAGCAGCACCTTAAGTCTCACATACTCCGAGCACACTCCCATGAGCGTCCCTTTCTCTGCACACTCTGTCCCAGCAAGTTCAGCCATTCTGCTGACCTCAAGATACACCTCAGGAGACATACAGGTTAG
- Protein Sequence
- MTISWERALAQTCSLPRIYPEPDLPEKLCTACIALTELAYSFKRQVLACDKSLRDHFNQQKKLLLSVPDSIPECIDPLKSDFELKEADFPPLNLCSGSSPGSSSAPFEGCDRMHTECQSNSILCPSGTKICRKIKPYKKIEHSTAPSQPKTHVRIKHTKERAFPCPLCPKTFVEKRALNRHKLAHRKQLSCHICSMTFGYRNALTAHLRLHTPTSNTIPCLQCEQVFKDDFQLKRHKRLAHTGETHSCPSCSKVFSHSSRLRRHLLVHRGVEQRRLQCQFCSRRFNHTHHLASHERTHTGVKPYLCAKCGKGFTQSVHLTIHLRQHENVPFSCELCGNTFPRKNSLERHMKTHSVINQYSCSICDLKFPTEAKLQKHMTFINHHNSPIIIEFSETEKKSNIPQLPVEIDASGYTEIISDNTEKRPIIIHRKIKEDLDNIKRHLCSDCGMSFKQKQHLKSHILRAHSHERPFLCTLCPSKFSHSADLKIHLRRHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -