Laur008643.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- TKFC
- Assembly
- GCA_951813805.1
- Location
- OX638395.1:8109286-8139695[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1e-05 0.0006 20.7 0.7 1 23 755 777 755 777 0.99 2 12 1.2 74 4.7 0.4 2 23 801 822 800 822 0.92 3 12 0.00027 0.016 16.3 5.5 2 23 830 851 829 851 0.97 4 12 0.0034 0.2 12.8 4.7 1 23 857 879 857 879 0.98 5 12 0.00055 0.032 15.3 3.6 1 23 888 910 888 910 0.97 6 12 7.4e-06 0.00044 21.2 0.1 2 23 917 938 916 938 0.96 7 12 1.7e-05 0.001 20.0 5.8 1 23 944 966 944 966 0.96 8 12 1.4e-06 8.5e-05 23.4 0.2 1 23 972 994 972 994 0.98 9 12 8.2e-05 0.0049 17.9 4.4 1 23 1000 1022 1000 1022 0.98 10 12 0.0014 0.081 14.0 2.6 1 23 1028 1049 1028 1049 0.98 11 12 2.6e-06 0.00015 22.6 0.3 1 23 1055 1077 1055 1077 0.98 12 12 0.014 0.81 10.9 1.6 1 23 1083 1106 1083 1106 0.92
Sequence Information
- Coding Sequence
- ATGAGCAGAATCGGGAAGAAGCTAATTAACGAAGTGGACAGGTGTGTAGACGATGCTTTAGAAGGATTCACTCTTCTCAACCCTGGTCTAAAGTTGCATCCAGATTATCGTTTTGTCAGCAGAACTAACGAAGAGATCACTTCAGAAGTTGCCATACTCTCTGGAGGGGGGTCTGGCCATGAACCTTTCTGCACAGGTTACGTTGGTAAGGGAATGCTAGCAGGAGCGGTGGCAGGAAGTGTCTTCACTTCTCCACCTAAAACTCACATCATCCACGCCCTGAGACACCTCAACCACTACTACAAAGGGGGTATTCTTGTTATAATTCCGAACTACACCGGTGACTGCCTTAACTTTGGGGTGGCCGTGGAACAAGCTGAAAGCGAGGGTGTTAATGTCGATACGTTCGTATTTGGGGATGATTGTGCCTCGGAACAAAACTCCATCACTGGCAGAAGAGGAATGTGCGGTCTGTCATTGGCTTATAAGATTGGCGGAGGTTTATCAGCGTTGGGCAAAAATATGTCCTTTATAATGGAATCTTTAAAACAAATCCAGAAAAATATATCAACGTTAGGCATCAGTCTTGAGGCGTGTTCACTGCCAGgTCAGCCACCACTCTTCAGTGTAGCGGATGACCAGATGGAATTGGGAACTGGTGTGCACGGTGAGGCTGGAATATCTAAAGTGAAAATGGCCACAGCAAAAGAAGCCGTAAAAATGGTGCTGGAAAGACTATTCAAGTCTTTGAATCTTACCCAACCTGGACAAGCCTTGGTGGTGCTTATTAACAATCTGGGTGCCACATCTCAATTGGAACAGAATATTATATGCAAAGAAACTCACAATCAGCTGAGTAAAGCAGGAATGAACGTTAAAAGGATGTACGCAGGCATGCTGATGACATCATTGGACATGTCTGGATTCCAGATCTCCCTTTTAAAAGTACCGAAAGCAGCGGAAGATGAGTGGTTAGAAATATTGGACAAGAACACCGACGCCCCCTGTTGGACAAATTCAACATTTACGTTCTCCCAAGAAGAACAACAACTGCTTAAAAAATGCCTGCAAAATGCTAGCCaggtattaaaagaaaatgagTCCAAGTTGAATGAATTGGACAGTGGCTGTGGAGACGGGGACTGCGGAACCACACTCAAAAATTTTGCTGAAgGTATTTTAGAGGCACTACCAAAAATGAATCTAGATTGCCCTGCGAAAGTTCTGCAAACCATGTCCGAGATAGCTGAGACCAAAATGGGAGGTACATCTGGTGCAATTTACAGTCTTGGATTCACATCGATTGTGGAAAAAGATCAACTTCCGAGAATCTGGGCAGAAGCCATGAAGATTGGAGTCAGAACAGTAATGAAATATGGACGAGCCTCGCAAGGAGATAGAACAATAGTTGATGCCCTTTTTCCAGCAGTTGAGACTTTTTCTCAGATGATTTGTGGAAGTGATTTCAAAACTGCAATTCATTCGAGTGTAGAGGCTGCGCAAAAGGGTTGCAAAGCAACGAAATCTATGAAAGCAAGGGCCGGGAGAGCGAGCTATGTAAATGAGGACCGACTGATAGACGTCGACGCTGGAGCTTATGGTTTCGCAGGGGatgaaaatgatattaatgCTGCTTTAAATGAGTCTTTACAGTCGACCGTGGTAAGCAGCATCAATGTAAACGGTACACGGTTGGATCGAATCCTCGTAGTCGGAACGTCAGGCTTAGATCATAACAACGATGGTTCATCTATTCCCGTCGAGGAGATTGAAATCCAGATTCCCATGGAATTTGATAAATATGTATCGATTGATGCAACTCCCATCTCCAAAGTCTGCCGAACTTGCTTGTGTGAAAAGCCGAGTATGCATTCTTTATTTGAGACCTGGGAGGTGGAAACCGTCGGCGAAATGTTGATGTCATTTGCCGCAGTTCAGCTATCTTTTGGTGACGGCCTACCGGAGAGCGTGTGCGCAGAGTGTATGGACCTGGTTGGCAAGTGCTTCACGTTCAAGCAGCTATGTGAGCGCTCCGAATCCATGTTGCGGTGCCTTGTGTCCCAGGGACACCTGCAGGGCATGAAGGATGAGCCCCACGCTATCCATTCCGACACTACTCCAGAGCAAAAATCCCATGATGAAAACGAGCCAaaaacagatacagaaaaaGCAGAAGACCCACCCGACAGATTCCCGGAATATTTAGAAGgggATCAACGTAAATTGAACCGTCATGAAAGAATTCATCTAGATGTGAAACCATTCCAATGTACTATATGCCGAAAAGGTTTCATAGAGTCGGGCGACTTGCGACGCCACGTGCGCAAGCACTCCAAGCCCTCGCAACCGCCGGACAGCATGAGCATGGAGCAGTCCCAGCAGACGGAGGGCTTCCGGGTGCCGTGCCCGCTGTGCCACCTGACCTTTGGCTGCCAGGGCGACCTCGCCATACACTCCTCAGTGCACGAGAGCGCCCTCGGTCGCTGGGTTTGCCGCCATTGCAATAAAGAGTTTCACACCAGCATGCAGCTGAAGCGCCATGTTCGAACACACCTATCGGACAAGCCACACAAGTGCCGCATCTGTCACAAGGGCTTTCCGGAGATGGGATCGCTCACGCGGCATTTCCGCCGCCACACCGGGGAGACGCGTGAACGTAAACACGTCTGCAGCCAGTGTGGAAAGGCCTACTTTGACCGGCACTCGTTGAACATCCATGAGCGCAAGCACACGGGCGAGCGGCCGTGGATCTGCTCTGAGTGCGGCAAGGGCTTCATTGACTCGCGCCTGCTCAACTCCCACATGAAGATACACAGCGACCTCAAGCCGCACGCTTGCACCACTTGCGACAAGAGATTCAAGCATGAGTCCACCCTGACCACCCACATCCGCACCCACACCGGAGAAAAGCCCTTCATCTGCTCTGTCTGCGGCAACGCCTTCGTGCAGTCCTCCAACCTCTCCCTTCACATGCGCACACACACCAGAGAAAAGCCATATCACTGCGACTTTTGCAGCAAGAAGTTCTCTAGCTCCTCAGCGCTCACAACCCACAAGCGCATCCACACAGGGGAGAAGCCCTACACCTGCAAGATCTGCGAGAGGAGATTTGCCCGCCACGATATGACGGCGCATATGCGCACCCACACGGGCGAGAAGCCCTTCGTGTGCTCCGTCTGCTCCAAGGGCTTCACCACCCCGGGCCAGCTGCAGCAACACACCCGGATACACACAGGAGAGAGACCGTTCATCTGTATAATCTGCCGAAAGGGTTGCGCCACCTCAAGCTACCTCAAAAGACACCTCATCCGTTCTCACAAAGTCACCGACATAGCCTCCCTCACAGACCTGCCAGAGCCCTCCGCTCCTGAACTGCGAAAACTTCTCAAAAACATGCCCAAAGAATTACCCGAAGACACCAAAGGAAGCTGCGAACCTCTCCTCCAAGAAGATATCAAACTAGAATCTTCCGATATGGCCCTACAAGAGGCTCAAGCCATAAACGTCGGGAGCGCCCTCTCCCTATCAAGTAATACTCTTAATTTTGTCGCCGTGGCAAACACGAATGGAGAAGTCAGTATTATTCGTCAGCAGACAGCTAACGATGTCAAAATGGTGACTTTGACGGCTGACGCCGGTGGCAACATCGGCACTATCATCACAAACACGCACATGTCGCAGGAGAAACTGTTTCAGATCGACCCAACTCTACTGCGCTTTACCACCGGAAATCTTGTTCCTAGTCAGGTCACCATCAGCGAACTCACCAGTGATAGTCAATAA
- Protein Sequence
- MSRIGKKLINEVDRCVDDALEGFTLLNPGLKLHPDYRFVSRTNEEITSEVAILSGGGSGHEPFCTGYVGKGMLAGAVAGSVFTSPPKTHIIHALRHLNHYYKGGILVIIPNYTGDCLNFGVAVEQAESEGVNVDTFVFGDDCASEQNSITGRRGMCGLSLAYKIGGGLSALGKNMSFIMESLKQIQKNISTLGISLEACSLPGQPPLFSVADDQMELGTGVHGEAGISKVKMATAKEAVKMVLERLFKSLNLTQPGQALVVLINNLGATSQLEQNIICKETHNQLSKAGMNVKRMYAGMLMTSLDMSGFQISLLKVPKAAEDEWLEILDKNTDAPCWTNSTFTFSQEEQQLLKKCLQNASQVLKENESKLNELDSGCGDGDCGTTLKNFAEGILEALPKMNLDCPAKVLQTMSEIAETKMGGTSGAIYSLGFTSIVEKDQLPRIWAEAMKIGVRTVMKYGRASQGDRTIVDALFPAVETFSQMICGSDFKTAIHSSVEAAQKGCKATKSMKARAGRASYVNEDRLIDVDAGAYGFAGDENDINAALNESLQSTVVSSINVNGTRLDRILVVGTSGLDHNNDGSSIPVEEIEIQIPMEFDKYVSIDATPISKVCRTCLCEKPSMHSLFETWEVETVGEMLMSFAAVQLSFGDGLPESVCAECMDLVGKCFTFKQLCERSESMLRCLVSQGHLQGMKDEPHAIHSDTTPEQKSHDENEPKTDTEKAEDPPDRFPEYLEGDQRKLNRHERIHLDVKPFQCTICRKGFIESGDLRRHVRKHSKPSQPPDSMSMEQSQQTEGFRVPCPLCHLTFGCQGDLAIHSSVHESALGRWVCRHCNKEFHTSMQLKRHVRTHLSDKPHKCRICHKGFPEMGSLTRHFRRHTGETRERKHVCSQCGKAYFDRHSLNIHERKHTGERPWICSECGKGFIDSRLLNSHMKIHSDLKPHACTTCDKRFKHESTLTTHIRTHTGEKPFICSVCGNAFVQSSNLSLHMRTHTREKPYHCDFCSKKFSSSSALTTHKRIHTGEKPYTCKICERRFARHDMTAHMRTHTGEKPFVCSVCSKGFTTPGQLQQHTRIHTGERPFICIICRKGCATSSYLKRHLIRSHKVTDIASLTDLPEPSAPELRKLLKNMPKELPEDTKGSCEPLLQEDIKLESSDMALQEAQAINVGSALSLSSNTLNFVAVANTNGEVSIIRQQTANDVKMVTLTADAGGNIGTIITNTHMSQEKLFQIDPTLLRFTTGNLVPSQVTISELTSDSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -