Laur007648.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638394.1:14840692-14846437[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.013 0.75 11.0 1.0 3 23 45 66 44 66 0.96 2 23 0.5 30 6.0 0.2 1 21 432 452 432 453 0.96 3 23 6.9 4.1e+02 2.4 0.3 1 22 509 530 509 532 0.82 4 23 0.23 14 7.0 4.0 3 21 542 561 541 562 0.91 5 23 0.015 0.89 10.8 0.6 3 23 571 592 569 592 0.94 6 23 0.001 0.059 14.5 1.2 3 23 615 636 613 636 0.94 7 23 0.11 6.5 8.0 5.5 1 23 642 665 642 665 0.95 8 23 0.16 9.3 7.6 0.1 1 23 701 724 701 724 0.93 9 23 0.003 0.18 13.0 0.6 1 23 729 751 729 751 0.98 10 23 0.006 0.36 12.0 0.7 1 23 757 780 757 780 0.97 11 23 0.0027 0.16 13.1 2.3 1 23 793 815 793 815 0.97 12 23 0.006 0.35 12.0 1.7 1 23 859 882 859 882 0.96 13 23 9.7e-05 0.0058 17.7 0.9 1 23 949 972 949 972 0.98 14 23 0.065 3.9 8.8 3.6 3 23 992 1013 990 1013 0.94 15 23 0.72 43 5.5 0.2 2 23 1019 1041 1018 1041 0.93 16 23 0.44 26 6.2 0.7 1 23 1095 1117 1095 1117 0.87 17 23 0.0003 0.018 16.1 0.3 1 23 1127 1149 1127 1149 0.93 18 23 0.0037 0.22 12.7 0.6 2 23 1250 1272 1249 1272 0.92 19 23 2.4e-07 1.4e-05 25.8 1.6 3 23 1279 1299 1278 1299 0.98 20 23 0.12 6.8 8.0 4.6 1 19 1330 1348 1330 1353 0.91 21 23 0.18 11 7.4 0.6 1 20 1391 1410 1391 1411 0.94 22 23 6e-06 0.00035 21.5 1.5 1 23 1412 1435 1412 1435 0.96 23 23 0.00027 0.016 16.3 1.9 1 23 1449 1472 1449 1472 0.97
Sequence Information
- Coding Sequence
- atgGAAGTAGAAGAAGAAGACGACATCAGTGTGGAGGAAGAGAGCATAGCGGTGGTGCCGCTGACAGTGCCAGTGGAAACAGGCGCTGTGGCACGACGCCCGGTGGCCGTAGCGCAGCTGGCCTCCAAGGACTGTCTGGTCTGCGGCCGCGCCTATCGCTACTCGCACAACGCGCGGCGACACGAGCTCACCTCGCACAACTATGACCGCTACACCAACAAAGTCAAGGCCCCCAGCCCCACCTTTGCCAAGCTCCGCCCCAACCCCTACAATCCCAAGGCACGCCTCCTGCCTAACCCCGTTAACCCCAAAATGCAAATGATCCCCAAGGCCAATCCCAAACCGGCCTTTAAACATAATCAAGCTGCGCAACCTTACCCCGTCAGAATAAGGTCGTTAGCTGATTTACAAAACAAAGGACGACAACCCGAAATCCTCAAATCTCTCCTAACGGGCAAACCTGAAATGCTCGTCTCCGAACCAGAAATAATGCGCTCCAGGTCTGAAAGCCCCGAAACATTGATTTCCGAGCCTGAACTTGCAGCTTTCCAAGTGGAGACCATCATTACCGAACCTGACACATATGTCAACAACTCTGAAGAGGATAGCGAAGACGGAGAGGATGATGATGAAGAAAATGAAGTGGATGAAGAAAACCACGTCCAGTCTGGTTCGGCAGCCGAGGTCGATTCGGATGAAGAAGTTCAAATATCTCCCCATGATGTtgatatcaataaaattatcgGAGTTGATGCGCAAAGTGCTGTTACTAAAGAAAAGGAGGCAGAATCCACTGAGGATAATAATGATGATGCTAACAAACCTGCCGAAGATGAAGTTCATGAACCGACTTCTGCCCATAGTGATGATGAATCTGATGAGGAAGATGATGAAGTATCTCCAGAATTTGAAAGCCACAAATCCAAGCAAGAAGAAGCTTTTGAGGGAGAAAACCAGGAAAGTGATAATGCAGATGAGTACAACGATGACGAGGAAGATGAAGATCTTCCCGATGTCCCCCTCGCTCCTATTgtagaaataaatgaaaatccaGAGGCAGGATCTAATGAGAATGATATGGACGAGGAGCACATCATGAGTGATACTATTGATATTAAAGAAATGTCTCTGCATTCTATGACTATAACTCCCACACAGAAGTCTTTCATGACCAAGTACAGGGATATCATTGAGCAGGTCAATACCATGAAGTGTAACTGCTGCAACAAATCTCATCCCAGAAGGAAGGCGGTCATCCAGCATCTGCAAAAAAATGGACACAGGGTTCCCAAACACACCTGCTACAATTGTGTAGTCACCTTTGGCCATATTGGAGCCCTGCTCAGTCACATGAGAGCTAATGTCTGCACCGATGCTTGGAAACTTATCTACGAAGAGGGAGGCATCCCTGACAGTATGGTCTCCGAAGCTCCTGTCGTTGAGGAATATAAAGTGGGAGATGCTTCTGGTAGAGAAGATATTCTCAACAAATCACAGTACAAAGATATCCTTAATGCTCGCTCATACGCTTGCAAATTGTGCCCTGCCAAATTCCAGCTCAAACAGTTTATAATGAAACATGTGTTGGATGTGCACGAGAATGGAGGGCAGAGAGTGCCACTGTGCTGCATTCACTGCAAGTACAGGTTCAAGGATAACAGATTGTGGAAGAAACACATCCGCAATGGAGAGTGCACTGTCAATATAGCCTGTGAGCTGTGCAATGAGAGGTTCAGATCCCTGCAGCACTTCAATGATCACGCCCTCTCCATCCACGCTGGAGGATTCGTTGACCAATCCACAGAGAACCTTTCTCGTTCAGTGGATGGCAGACCTACAGATTGCCCTATTTGCAAAAAGAACACATCATCCTACCACAACCTCGTCAAACACTTGAAGGCCATTCATAATGAAGACAGGCCACACATGTGCCAACATTGcgataataaatttgaaacagTCACCGAATTGAACCACCACATATATAAGGAACACTCGGACAGGGTTACCAATGGAGATGGGGAACATGAGACCGATCAAGACATAGATCAAGATCAAATGGATCtaagcattgtcaagcaagaaGTGACCACTTACAACTATTCTTGCACAGACTGTTCTTCAATGTTTGATACTGTTGATGGCTGGACACAACATCAGATAGATGCTCACAATCACACGGCCTTTGAGTGCGACCAATGTGACAAAAAGTTCTTACAAGACTCTGAACTTATAGAACACAAAAACACGCATTTACGAGTCAAGTTTTATTCGTGTACTGTTTGTTCAAATTCCTACAGCTCTCCGCAACGGCTCTCTGAGCACATGATGAAGAGTCACCCGGGAGAAGCCACCGTCGACGGATCGGCTGATCCATTCTTCTGTGAGATGTGCATGAGATCATTCAAGAGTCGCCAGGCATTCTCCAACCACATGCGTATTCACGCGAAGGTCCCCACCACTAATAAAAAACCAGGTGAAGCGGTTAAGCAACAGCAACCGAATACCGTTCGTCAACCTGTTGCTCAAAATTTGAACTATAGAAATTCCCCCAAACTGATGCCTGACGCTCCTTACAATTGCGACATTTGTGGAAAAGGTTTCCTTCATAAGAAAAATATCTGGAAACATAAAAAGATCCTTCACCCCGAGGTGGTGAGAAGGATGGAGCTAGAGAACAGTGGGAGTGGAAGTCACTTTATGAATGTTGCTTCTACAGAAGATGATGAGTACACTAACGAGGAACATAATAACAGTACCGGTCTGTCCATTCCACAATTCGATAGTTTCACCTCAGCTGCCTTTGATCAGACTGACAACAGTGTATCAGACGCGGGCCAGCTCTATCAGTGTGATCTCTGCGACAAGAAGTTTGCCGTGAAGAGTAGCATTTGGAAGCATAAGAGAGTAAAGCACGGAATCGTCAATCCTAATTTACAAGACGAAGGTATGAAGCAGGACAACAGAACTTGCTGTACtatctgtaaaattaactttaatgATAAGCGAGCATATTATAGACATAGGAAAAATGTACACAAAGTCAACATTCAATCTTGCAAAATATGCAGTAAGGCTCTAAACTCTACTTTGGAGCTCTATGAGCATTACAAGGCCGCACACGCAAAGGAATTGTTGGGATACAACGCCAGCCAAGGGGGGAACTCCAACAAACTGCAGGCGGAATCTACACCTGACGACCCAGAGGACAATTACAGCGATGATGATGAAGATGGCACTCAGGAGGATGGGTCTTTCCAGGAAGAGCAGTATCAAGCCAGGTACCCTTGCGACTCTTGCGGGAAGACCTTCCTCGGAATGATGGCCCTGCAGAATCATAATTGTGTTCATGTCGAAGCCGAGCTGGGCGCCGAGACCTTCGACTGTGAGATTTGCAATAAGAGTTACACTTCCATATCCGCCCTCAAGAGCCACAGAGGTTGGCATTTGAGATCACCTGATGGCAAAGCCGCATTCAGCAGCTCTGGCCTATGGATGCCTCATAACAAGGTGACCAATAAAGTGAGCAAACACGAGGTCCTTGAAAATCCCCGTGTCAAACATTCCACTCCCATCATAGACAATGGATCCCTTCAAATTAAGCGCAAGCTGCCACCCGATGTGCAGATGACCCTGCTTAAGAAGAAAAAACTTTCCAATGAAGTAACCGTAGAATTGGTTCAAACAGTTCCTAGAAACGAGCAAGCGGTGGCCGCCATGCAGGCCAGAGTGGCTGATGAAAGCAAAGTTTGCCATCCCTGTGGGAAAGAGTTCACCAAGCGAGCGGCCTACATGCGGCACATGGAGGAAGTGCACCGCCCCAACTCTGTCTTCTGTCCTATCTGCAACAAGAGTTTCACACGGCGATCCACGCTTCTGGTGCACATGCGCAAGCATGGGATAGATGGTGAAGATCCGCGCTCCGGAGAGGGAGAGAGCGAGGAAGGAGATACCCCGGCACCGCTGCCTCCGCCACCGGAACGCCTCTACAGCTGCGACCTCTGCAATGTGCGCTATACCTCAGCCAAATCTTTGCGACGTCATTGTGTGAAGCATCACAATATCGCCGCCGAGGATGTTATCGAGGAGCGAGCGGCCCCTGGCGGGGGCAACGCGGGGGCTGCGGGAAATATGGTGGGAACTCGGGTGATAGAGGTGGGAGGCTCACGCCACAAGTGCGGGCAGTGCGGCGAGGAGTTTGCCTCTGACAAGGACATGTGGCAGCACCGCCACTTCTCTTGCACGCAATGTGGCATGTTCTTCTCGCGCCAACAGTACCTCACGGCACACATGCGAGCGCGCCACCAGAACCAACCGCCGCCCGCCGACAGTGAGAAAATGTTCTTCCCCTGCAACATGTGCGACCGTTTCTACATGAACAAGAAAAGCCTCCAGCGGCACACGGAAACCTCTCActag
- Protein Sequence
- MEVEEEDDISVEEESIAVVPLTVPVETGAVARRPVAVAQLASKDCLVCGRAYRYSHNARRHELTSHNYDRYTNKVKAPSPTFAKLRPNPYNPKARLLPNPVNPKMQMIPKANPKPAFKHNQAAQPYPVRIRSLADLQNKGRQPEILKSLLTGKPEMLVSEPEIMRSRSESPETLISEPELAAFQVETIITEPDTYVNNSEEDSEDGEDDDEENEVDEENHVQSGSAAEVDSDEEVQISPHDVDINKIIGVDAQSAVTKEKEAESTEDNNDDANKPAEDEVHEPTSAHSDDESDEEDDEVSPEFESHKSKQEEAFEGENQESDNADEYNDDEEDEDLPDVPLAPIVEINENPEAGSNENDMDEEHIMSDTIDIKEMSLHSMTITPTQKSFMTKYRDIIEQVNTMKCNCCNKSHPRRKAVIQHLQKNGHRVPKHTCYNCVVTFGHIGALLSHMRANVCTDAWKLIYEEGGIPDSMVSEAPVVEEYKVGDASGREDILNKSQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHENGGQRVPLCCIHCKYRFKDNRLWKKHIRNGECTVNIACELCNERFRSLQHFNDHALSIHAGGFVDQSTENLSRSVDGRPTDCPICKKNTSSYHNLVKHLKAIHNEDRPHMCQHCDNKFETVTELNHHIYKEHSDRVTNGDGEHETDQDIDQDQMDLSIVKQEVTTYNYSCTDCSSMFDTVDGWTQHQIDAHNHTAFECDQCDKKFLQDSELIEHKNTHLRVKFYSCTVCSNSYSSPQRLSEHMMKSHPGEATVDGSADPFFCEMCMRSFKSRQAFSNHMRIHAKVPTTNKKPGEAVKQQQPNTVRQPVAQNLNYRNSPKLMPDAPYNCDICGKGFLHKKNIWKHKKILHPEVVRRMELENSGSGSHFMNVASTEDDEYTNEEHNNSTGLSIPQFDSFTSAAFDQTDNSVSDAGQLYQCDLCDKKFAVKSSIWKHKRVKHGIVNPNLQDEGMKQDNRTCCTICKINFNDKRAYYRHRKNVHKVNIQSCKICSKALNSTLELYEHYKAAHAKELLGYNASQGGNSNKLQAESTPDDPEDNYSDDDEDGTQEDGSFQEEQYQARYPCDSCGKTFLGMMALQNHNCVHVEAELGAETFDCEICNKSYTSISALKSHRGWHLRSPDGKAAFSSSGLWMPHNKVTNKVSKHEVLENPRVKHSTPIIDNGSLQIKRKLPPDVQMTLLKKKKLSNEVTVELVQTVPRNEQAVAAMQARVADESKVCHPCGKEFTKRAAYMRHMEEVHRPNSVFCPICNKSFTRRSTLLVHMRKHGIDGEDPRSGEGESEEGDTPAPLPPPPERLYSCDLCNVRYTSAKSLRRHCVKHHNIAAEDVIEERAAPGGGNAGAAGNMVGTRVIEVGGSRHKCGQCGEEFASDKDMWQHRHFSCTQCGMFFSRQQYLTAHMRARHQNQPPPADSEKMFFPCNMCDRFYMNKKSLQRHTETSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00675319;
- 90% Identity
- -
- 80% Identity
- -