Basic Information

Insect: Limnephilus auricula
Gene Symbol: -
Assembly: GCA_951813805.1
Location: OX638392.1:218034-228187[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.1e-07 6.6e-06 26.9 0.7 2 23 301 322 301 322 0.98

2 9 3.3e-06 0.00019 22.3 6.1 1 23 327 349 327 349 0.99

3 9 4.7e-05 0.0028 18.6 3.1 1 23 355 377 355 377 0.98

4 9 6.1e-07 3.6e-05 24.6 0.7 1 23 383 405 383 405 0.98

5 9 4.9e-07 2.9e-05 24.9 3.0 1 23 411 433 411 433 0.99

6 9 5.2e-06 0.00031 21.7 0.5 1 23 439 461 439 461 0.98

7 9 2.5e-06 0.00015 22.6 0.1 1 23 467 489 467 489 0.98

8 9 0.0014 0.084 14.0 0.2 1 23 495 517 495 517 0.97

9 9 4.1e-05 0.0024 18.8 1.7 2 23 523 544 522 544 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.1e-07	6.6e-06	26.9	0.7	2	23	301	322	301	322	0.98
2	9	3.3e-06	0.00019	22.3	6.1	1	23	327	349	327	349	0.99
3	9	4.7e-05	0.0028	18.6	3.1	1	23	355	377	355	377	0.98
4	9	6.1e-07	3.6e-05	24.6	0.7	1	23	383	405	383	405	0.98
5	9	4.9e-07	2.9e-05	24.9	3.0	1	23	411	433	411	433	0.99
6	9	5.2e-06	0.00031	21.7	0.5	1	23	439	461	439	461	0.98
7	9	2.5e-06	0.00015	22.6	0.1	1	23	467	489	467	489	0.98
8	9	0.0014	0.084	14.0	0.2	1	23	495	517	495	517	0.97
9	9	4.1e-05	0.0024	18.8	1.7	2	23	523	544	522	544	0.96

Sequence Information

Coding Sequence: ATGATTGGCAATCATAGAGGTATTTTTGTtggtaataaccaaatattagACTTTGATAAAATTTGCAGATTGTGCTGTGCAGAGGCATCAATGCTATCTGTTTTTAAAGTtcacattcacaaaaaaataaccgCGTGCACTGGAATTCAGGTATGGCAAAATGACGGCATGCCCCATCAGATTTGCAAAAAGTGCATGTCCAAGCTGCACATCGCATTTCAATTCAAGAAACAGTGCGAGAATAGTGATTTTCGACTGCGTCAGTATAAATTGAGCGAGAAATTTGCTGAGAAAAGAGATAAAAATGGTCAACAAGATAACGAAGAACTTCAACAAGAAGAACCACTACAACAAATAGAAGAACTAGGAGAATCCCTCCCTCCGGAGCTGCCACCATTAGCCCCGGACTATTCCTACAATGATCCTTTGCCTTTATCAGATAACAGACATTACGATACGCTACATAACCTCAATCTGGGGCCGTACGATTTGCCCACTGAGCCCCAGTTTATTTTCAATGGAAACAGTATCCTGGCCAACATGACCAATGTGAATATCCCCCTCCAGGGAAACGTCCACATGCCTGCAAACTATAATATTCAAAGCATCAATACTATCCAATCCAACACATCCTTTCAAAATTCCTTCACCATCCACGCTCTCGGGCCACCTACTGGGATCCCTACTCAGGTGCTTACTCTTGACGACCCACCAGTTCCAGATGTAGACACGGCCATCATAACAGAAGATCTCCTGCCATACAACGAGCCAGGAGAGCAAGACGAGGAGCGGATAAATACGGAATCCGCCCCCGAGGAGAAGAAAGATCCTCGGCCGGCGTACGTGTTCCACAAGATGGGCTGCTTGAAGGTGCGCTCCAAGAAGGACATTGAGGACAACCGCTGTCCCATCTGCAACAAGGCCTTTGCTTCCAATGGGAAGCTGACGAGACACATGAAGACGCACGGGGATAAACCCTTCAAGTGTAAGGTCTGCAAGAAGACTTTTGCTCACCACggaaattttaagGTTCACATGCGCGTCCACAACGACGAGCGGCCTTTCTCCTGCTCCATGTGCAACATGGCATGCCGCCAGCAACAGGACCTGGACAAGCACATGCGCACGCACACGGGGGAGCGTCCCCACGTGTGCTCCACGTGCGACAAGGCCTTCGCCACCTCCAGCAATCTGGTGGTACACGAGCGTACACACACGGGTGTGAAGCCATATGTGTGCTCCGTGTGCAGCAAGGGATTCTGTCAGTCCAACGAGCTGACGAAGCACATGCGCACACATACGGGCGAGAAGAGCCACACATGCCCCGAGTGCGAGAAGGGCTTCAACGGCTCCTCTACGCTCATCGTGCACCTGCGCTCGCACACGGGGGAGCGCCCCTATGTCTGCACCATCTGCAGAAAAGGCTTCACCCAGTCGTCCGGGCTGGCTGCACATGCTCGCTCGCACTCGGCGCTCAGCGGCTACCAGTGTGCCCGCTGCCCGCGCGCCTTCCCCACCATCTCGGAGCGGCGGCGCCACCAGTCGGCGCATGGCCTCGCCAACCTGCCGTGTCCCCAGTGCCACCGCCGCTTCTCGCGCACCAATGACCTGGTGCGACACTCGCGGGTTCACGAGCGCCGCTGA
Protein Sequence: MIGNHRGIFVGNNQILDFDKICRLCCAEASMLSVFKVHIHKKITACTGIQVWQNDGMPHQICKKCMSKLHIAFQFKKQCENSDFRLRQYKLSEKFAEKRDKNGQQDNEELQQEEPLQQIEELGESLPPELPPLAPDYSYNDPLPLSDNRHYDTLHNLNLGPYDLPTEPQFIFNGNSILANMTNVNIPLQGNVHMPANYNIQSINTIQSNTSFQNSFTIHALGPPTGIPTQVLTLDDPPVPDVDTAIITEDLLPYNEPGEQDEERINTESAPEEKKDPRPAYVFHKMGCLKVRSKKDIEDNRCPICNKAFASNGKLTRHMKTHGDKPFKCKVCKKTFAHHGNFKVHMRVHNDERPFSCSMCNMACRQQQDLDKHMRTHTGERPHVCSTCDKAFATSSNLVVHERTHTGVKPYVCSVCSKGFCQSNELTKHMRTHTGEKSHTCPECEKGFNGSSTLIVHLRSHTGERPYVCTICRKGFTQSSGLAAHARSHSALSGYQCARCPRAFPTISERRRHQSAHGLANLPCPQCHRRFSRTNDLVRHSRVHERR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -