Laur021729.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638410.1:23525707-23535971[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.04 2.4 9.4 2.1 1 23 189 212 189 212 0.95 2 27 0.0027 0.16 13.1 1.4 3 22 257 276 256 276 0.94 3 27 0.0015 0.086 14.0 0.3 2 20 307 325 306 327 0.92 4 27 0.28 17 6.8 1.2 2 20 362 380 361 382 0.92 5 27 0.0018 0.11 13.7 3.7 2 23 393 415 392 415 0.96 6 27 0.00013 0.0077 17.3 0.2 2 23 455 476 454 476 0.94 7 27 4.1e-05 0.0024 18.9 1.8 1 23 498 521 498 521 0.96 8 27 0.0044 0.26 12.4 2.7 1 23 538 561 538 561 0.97 9 27 0.0089 0.53 11.5 0.2 1 23 632 654 632 654 0.96 10 27 0.032 1.9 9.7 0.2 1 23 713 735 713 735 0.97 11 27 3.2e-05 0.0019 19.2 1.0 2 23 750 771 749 771 0.97 12 27 0.0039 0.23 12.6 0.2 2 23 783 804 782 804 0.96 13 27 1.5e-05 0.00089 20.2 3.7 1 23 810 832 810 832 0.99 14 27 3 1.8e+02 3.5 1.7 1 23 854 876 854 876 0.91 15 27 0.04 2.4 9.4 2.4 1 23 887 909 887 909 0.97 16 27 1.7e-05 0.001 20.0 4.9 1 23 916 938 916 938 0.99 17 27 0.00068 0.04 15.0 0.2 3 23 953 974 952 974 0.98 18 27 0.024 1.4 10.1 7.4 1 23 995 1017 995 1017 0.97 19 27 0.0018 0.11 13.6 1.5 2 23 1057 1079 1056 1079 0.94 20 27 0.019 1.1 10.5 3.5 1 23 1101 1123 1101 1123 0.97 21 27 0.14 8.4 7.7 1.0 2 21 1127 1146 1126 1147 0.91 22 27 0.13 7.7 7.8 2.1 2 23 1166 1188 1165 1188 0.95 23 27 0.12 6.9 8.0 6.8 3 23 1234 1254 1232 1254 0.98 24 27 0.077 4.5 8.5 0.1 2 23 1265 1287 1264 1287 0.93 25 27 0.33 20 6.5 4.3 2 23 1304 1322 1303 1322 0.86 26 27 0.053 3.1 9.1 2.1 3 19 1410 1426 1408 1430 0.93 27 27 0.011 0.63 11.2 1.3 3 23 1442 1463 1441 1463 0.95
Sequence Information
- Coding Sequence
- ATGTCTCTCGTCCTCAAGCTTAGTAAATGCCGCTTATGCCTCAAGCTCGGCGACTTTTACTCAATATTTGCTGTCGATAATTCAATTCAACTATCAAAAATGGCCATGGCTTGTTCCGAAATAAAGATTTATGAAGGCGACGGTTTACCTGAAAAGGTCTGTGGAGAATGCATTGAGAAGCTGAGCTCtgcatacatttttaaacaacaaTGCGAGCGTTCTGACACCGAACTCCGTAAATCTTTACAAAATACATCAGgCGGTGCTGAAATATTGTCATTTGGACGGAGAAACTCTGACTCGGGCTTCTCCAATCGCACCGATGTCTCCACTTCAAAGAAGGAGATGCACGCAACGAGATCCAAGAGTAAAAAGAGCAATGGACCCTCGCCGGAGAGAGCCGCATATCCCACTGGAGGACTCCTGGAGGAGAGTTACAGCATCGATGTCCGGGACCAATTATACGAAGGGGCATCCTCCACCCCTGTACCTTATAACAAACGCCTCGGCAAAAATACCTCCGACTCCGGAAGCAACAGTCCTATCATCACCGATCAGACCCGCTTCGAATGCAAGAAATGTAACAAAACTTTCCTCAACATCAAAACACAGAGAGCACATATGAAAAACATACACACAACCTCtgacgaagaagaagaagacgatgAAGAGGAGGAAGTTAAAGAAATTATCCCCGATGTAAAGACAACAAACCACGGAGAAACTTCGCAAGACAACAACTCTTCAATTACCAGAGATCAATCAGACTGCCATCTCTGCGGAAAACAGTTCAAATTCAACATCATGCTCAACCGTCATCGTCTGACTTGCCAGGGGCCACCCGTCGTAGCCGCAGAACCGATCAAAGTGGAGTCTAAGAGGTTCTCAGCCAGCGCTTTAGTCCCCGTATCGTGTTTAAAGTGCCCCGTGTGCGGAAAGGTGTTCAAAAAGCGCCTGTACGTCATGCGCCATCTCACTCGCTCTGTCTGCGGAGAGATCGCCAAAGAATTCCCAGAAGACAAACCGGCGAAGATAAAAGACGAAAAATCCGCATCAAAAGCGGCAAAATCGGCATTTGTATCGGAGTGTTCGATATGCACGGCACGTTTCTCTTCACACACCTCCATGTTTAAACACTTCCAACTCTGCATCCGACGTAGAGGCGGAGGTCCCATCAAATGCGTGACTTGCAAGACTACGTACTCGCATAAGTCGGGCTTGTATCGGCACATCAAGAAGACGCATTACCCGGATGAAATGGCCGGTAAAGCGAAGAAACGTCCCGCCGGAACGGATTTGGTTCCCAAAGATGAGCCTCTGTCGGAGGCTGATGATAATGCGGAGGATGAAGGGGGCTCGCTGAAGTGCAGGGAGTGTGATAAGACCTTCTCTGACCAGATGCAGCTGGTGATGCACTTGGCGGCGCACATGGCCAATATTAACGAGCCCAAGGGATCTCTTAAAACGAAGATAGGGTTTGATGGGACAGACTACGAGTGCCTTGAGTGCAGCAAGAAATTCAAATACAAGGGCAACCTGCGGGTCCACTTGAAACAGCAACACAACTACTCCATCGACATTATCCACCGACTGGAAGAATCGCTCAGCCAATTCAAATGCGACATGTGCGACAAGGCGTTCCAGTTTGAGAAGTCGCTGACGTACCACAAGAACAGCAAGCACAACAAGCTGACGGCGCTGGCCAGTCCGCAGCCCATCCAGTCGGTGGTGGTGCCCATCATCCCGGATCCCAACCTGACCCACACTGACGTGATAGTGTTTACCAAGTGCCCGGCGCGGTGCCTCCACTGTAACGTGATGCTCAACAACCTGAAGGAGACCAAGAAGCACAACCGCTTGCACATGGACGCCAATGTGAAGCCCAAGAATGAGTACTCGTGTCCAGCGTGTGGGGTTAAGTTTACCAATACCAAGTATTTCAGTATTCACATTGCCGAGCACAACGCCAACACCAACGCAGATTCGCAGCAAGCTTCAGACGGCGAGGACGAGGAAATAAATGTGATGGATTTTTGTGAGTCCGTCGTGGCGAACATAAAGCAGGAGGGGGGGGCCGGCCACGGCGGATCTACCCTGGGAGTGGGGGGGCAGCAGCTAGTTGTGGCGCTCGGGGGCTTCACGTGCACCCTCTGCAGCAAGAGGCTGGCCTCCGTTGAGCAGTACGAGAGCCACATGGCGTGGCACAGCAAGCGCTCAAACGCGCAAACGGGCTCCAAAGCTGCTGTGGTGTGCCCCATCTGCTCGGAGTCGTTCCGTTTCGACAGTCACCTGCGTGACCACATGCGGCAGCACGCCCTGGCAGCCGTGGAGGACCCCACACTGCTCAACTGTAAGATCTGCCCGCGCACCACCAAGAACCTGCGCGGGTACATCGCCCACATGAACTGGCACAGCTCCGCCTCCAACTTCCGCTGCCCCGTCTGTCTCAAGCAGTTCTCCCAGAGGGGGCACCTCACCACCCATTACCGCACCCACGTCAAGAAGAACGAAACAAGACTCAACGACGTCTTCGACCACCAGTCCGGCAAGGTGACGGACTTCCAGTGTCACGTCTGCAAGAAGTACATGCCTACGCTGGTCTCGCTGACCTTCCACGTGCGCTGGCATAGCTCCGCGGCCGGACGTGCGGCCATGCGCTACGAATGCAGCAAGTGCAACATTGCATTCACCAACAAAACACGTCACGTCATGCACATGCGAATTCACGCCGATAGCAACTCCCCGTACAAATGTCACATCTGCGGCAGAGGTTGCAAATCGCCCGCACATCTGACTTCGCACATCAAATCGCACTCGTTCGTCAACCGACTGAAGAAGAATGCTCTTAATGTTCTCTGCCCGGTTTGCGAACAAGTTTACCCGAATCAGTTGAAGTTGCAGCGTCACATTCGGCGATCGCATCCCGAGTCCAAGATGGTCAAGAAGAATGATCCCGGAGCCGAGGATCTCCCCATTATTCGTCACATCTGTCGGGTCTGCGGAAAGGAGTTCCACACGGAGCACAAGTTGAAAATGCACACCAGGAGACACAACATAAAGCCTAACTTCTATATCTGCAGCATCTGCGATAAGCGGACCCTCTCTCTCAAGATCCATAACATGCACATCAAGGCTCACCTTAACCAGAAATTCAAGGATTGCCCCATCAAGTGTAACTATTGCGAAGAAAGATTTGTACGCAGAAAAGAACTCCACGTGCACGTTTACAAGGTTCACGATATTTTGGAAAATTACATATCCAAAGTTGACAACAAGAGGAATGTTACGGAGCTCAAGGAATATCAGTGTCACGTTTGCTTCAAGGTTTTGGCTCACGAGAGCAGCTATCTGAGACACTTGGACTATCACAATACCATGCGATGCAACTATTGCTTCAAGTACTTTACCAATAAAACTTTTGCCCAAGCTCACACGATGTACGATTGTGACAGGAAGAAGATGCTGGGAGGAAACGATACGTTTGACAAGAAGCTAAAGTGCCCCGTGTGCTACAAGGCGTTTGCCGTATCTGTCAAGCTACATTGCCACATGAAAGTACAGCACAACTTGCAGCCTACCGAGTCCCGCCTGGAGCAGGACCGCGCCACCGTCTGCGACTTCTGCTTCGTCACGCAGCCCAGCGAAAAGCAGATGCTACGCCACCGCTCTGTACATCTTCGCTTCAACACCTACTACGGATGCCACTTCTGCCCCAAGAAGTTCTGCACTATGCCTCTGTTCTTCCGACACAAGAAGACTCATCTCTACCGACACTACACGGAAAATCCCCTTCAGTGCGAGGATTGCCCCgagaattttgtttatttccaaGACTACTCGAGCCATCTGCAAGACGTTCACGGCAAGGAAGTCAACTGGGTCATCATGCCAAAACCTTCCCCCGTTCAAGAATGTCCCATCTGCAAGAAGCGCTTCAGCCATCTGCATAACCACCTCATGTACCACGAAAAGTTCAAGTGCAAGCGCTGCTCCGAGTACTTCTTCTCCGACACGGCCTTCGCCGCCCACCCCTGTCCCGAGGGAGATCTCGCAGACCAAGAAGAAGAGACCGCCTTCGTAGGAGTACCGCAGGCTCTGACTTTTGCTAAGCAAGCCAATCGGATTTTAGAACCGTACGAAGAGTGTGACTTTTGCTTCAAGCCGTACACTACGAATTATACCAAAGGTAAACACGACACAACTCACAGGAAGATGGTCAGCTTCGGATGCAGGTATTGCAACAAGACCTTCACTTCCCACGCCCTCTTTAAACTGCACGCTCCCTCGCACCGGCTGCGGCACTACAAGTCCAACCCCCTGCTCTGCAAGCACTGCGGAGAAACCTTCATCAAGTTTGGCCTCTACCTCCGCCACTTGAAGGACGTTCACGACGACAAGGAGAGCATGATTCTCCGTCCCTCCTACCCGCCCGAGGAGTGCAAAGTCTGCAAGCAGACGTTTGAGTGCATCCATCTCCACTACCGCTTCCACATGCAGTTCAGGTGTACCTCGTGCCTTAAGTACATAGTGTCGGAGAAACTGTTTAAGGCTCACATCTGCGGAAACGAGGAAGAAGACCAGAGCAAGATATTTGAGTATGACGGAGACATACAACCCTTGACGATTGGGATGTTTGATTACGACACCTTGAGACATCGCTCCATCAACGCGAAACCAATTGCTGACGCATCGTCCGACCAATCCAAAGACTTCTCTCTCGAAGACATCGACATCACTCCGACGGAACTAGACAGTTCAGCGTTAAACAGCGTCGATCTGACAAACATGTCCTATTCTCCCGACATTACAGATTCCAATCAAGACATGATTGTTTCTATACCTGACCAAGTTTTGTTTGGCAATTACACGCCGAGTAATTCTAACGCGTCGTTTGATAACTTTACTCCCGTCATCTCGTCCACCGTTTCGCTGTCATCGAATCCCGCCATTATCACCCCCGAAGAAGAACTGAACGATAGAAAAGACGAGGAAGAAAACATGGTACTAGAACTGGACACGGATGACAGCGAAGTCGACGAAGGAAAAGAATCGGCCGAAGAGTTAATCAAAATCGTAGACGATTTGGAAAACAGTTTTACGTTACCCAGTGAGGACGCTAGCCAGGAAAAAGAATAA
- Protein Sequence
- MSLVLKLSKCRLCLKLGDFYSIFAVDNSIQLSKMAMACSEIKIYEGDGLPEKVCGECIEKLSSAYIFKQQCERSDTELRKSLQNTSGGAEILSFGRRNSDSGFSNRTDVSTSKKEMHATRSKSKKSNGPSPERAAYPTGGLLEESYSIDVRDQLYEGASSTPVPYNKRLGKNTSDSGSNSPIITDQTRFECKKCNKTFLNIKTQRAHMKNIHTTSDEEEEDDEEEEVKEIIPDVKTTNHGETSQDNNSSITRDQSDCHLCGKQFKFNIMLNRHRLTCQGPPVVAAEPIKVESKRFSASALVPVSCLKCPVCGKVFKKRLYVMRHLTRSVCGEIAKEFPEDKPAKIKDEKSASKAAKSAFVSECSICTARFSSHTSMFKHFQLCIRRRGGGPIKCVTCKTTYSHKSGLYRHIKKTHYPDEMAGKAKKRPAGTDLVPKDEPLSEADDNAEDEGGSLKCRECDKTFSDQMQLVMHLAAHMANINEPKGSLKTKIGFDGTDYECLECSKKFKYKGNLRVHLKQQHNYSIDIIHRLEESLSQFKCDMCDKAFQFEKSLTYHKNSKHNKLTALASPQPIQSVVVPIIPDPNLTHTDVIVFTKCPARCLHCNVMLNNLKETKKHNRLHMDANVKPKNEYSCPACGVKFTNTKYFSIHIAEHNANTNADSQQASDGEDEEINVMDFCESVVANIKQEGGAGHGGSTLGVGGQQLVVALGGFTCTLCSKRLASVEQYESHMAWHSKRSNAQTGSKAAVVCPICSESFRFDSHLRDHMRQHALAAVEDPTLLNCKICPRTTKNLRGYIAHMNWHSSASNFRCPVCLKQFSQRGHLTTHYRTHVKKNETRLNDVFDHQSGKVTDFQCHVCKKYMPTLVSLTFHVRWHSSAAGRAAMRYECSKCNIAFTNKTRHVMHMRIHADSNSPYKCHICGRGCKSPAHLTSHIKSHSFVNRLKKNALNVLCPVCEQVYPNQLKLQRHIRRSHPESKMVKKNDPGAEDLPIIRHICRVCGKEFHTEHKLKMHTRRHNIKPNFYICSICDKRTLSLKIHNMHIKAHLNQKFKDCPIKCNYCEERFVRRKELHVHVYKVHDILENYISKVDNKRNVTELKEYQCHVCFKVLAHESSYLRHLDYHNTMRCNYCFKYFTNKTFAQAHTMYDCDRKKMLGGNDTFDKKLKCPVCYKAFAVSVKLHCHMKVQHNLQPTESRLEQDRATVCDFCFVTQPSEKQMLRHRSVHLRFNTYYGCHFCPKKFCTMPLFFRHKKTHLYRHYTENPLQCEDCPENFVYFQDYSSHLQDVHGKEVNWVIMPKPSPVQECPICKKRFSHLHNHLMYHEKFKCKRCSEYFFSDTAFAAHPCPEGDLADQEEETAFVGVPQALTFAKQANRILEPYEECDFCFKPYTTNYTKGKHDTTHRKMVSFGCRYCNKTFTSHALFKLHAPSHRLRHYKSNPLLCKHCGETFIKFGLYLRHLKDVHDDKESMILRPSYPPEECKVCKQTFECIHLHYRFHMQFRCTSCLKYIVSEKLFKAHICGNEEEDQSKIFEYDGDIQPLTIGMFDYDTLRHRSINAKPIADASSDQSKDFSLEDIDITPTELDSSALNSVDLTNMSYSPDITDSNQDMIVSIPDQVLFGNYTPSNSNASFDNFTPVISSTVSLSSNPAIITPEEELNDRKDEEENMVLELDTDDSEVDEGKESAEELIKIVDDLENSFTLPSEDASQEKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -