Basic Information

Insect: Limnephilus auricula
Gene Symbol: -
Assembly: GCA_951813805.1
Location: OX638416.1:269792-273754[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0014 0.081 14.1 0.5 1 23 162 184 162 184 0.98

2 12 5.3e-06 0.00031 21.6 1.4 1 23 190 212 190 212 0.98

3 12 0.0073 0.43 11.8 1.9 1 23 218 240 218 240 0.97

4 12 0.00052 0.031 15.4 5.1 1 23 246 268 246 268 0.98

5 12 0.0001 0.0061 17.6 0.1 1 23 383 405 383 405 0.98

6 12 1.1e-05 0.00063 20.7 1.4 1 23 411 433 411 433 0.98

7 12 9.6e-05 0.0057 17.7 3.3 1 23 439 461 439 461 0.98

8 12 0.00013 0.0074 17.3 2.3 1 23 467 489 467 489 0.98

9 12 9.5e-06 0.00056 20.8 0.5 1 23 495 517 495 517 0.98

10 12 8.9e-06 0.00053 20.9 0.9 1 23 523 545 523 545 0.98

11 12 0.007 0.41 11.8 2.1 1 23 551 573 551 573 0.97

12 12 2.7e-05 0.0016 19.4 4.2 1 23 579 601 579 601 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0014	0.081	14.1	0.5	1	23	162	184	162	184	0.98
2	12	5.3e-06	0.00031	21.6	1.4	1	23	190	212	190	212	0.98
3	12	0.0073	0.43	11.8	1.9	1	23	218	240	218	240	0.97
4	12	0.00052	0.031	15.4	5.1	1	23	246	268	246	268	0.98
5	12	0.0001	0.0061	17.6	0.1	1	23	383	405	383	405	0.98
6	12	1.1e-05	0.00063	20.7	1.4	1	23	411	433	411	433	0.98
7	12	9.6e-05	0.0057	17.7	3.3	1	23	439	461	439	461	0.98
8	12	0.00013	0.0074	17.3	2.3	1	23	467	489	467	489	0.98
9	12	9.5e-06	0.00056	20.8	0.5	1	23	495	517	495	517	0.98
10	12	8.9e-06	0.00053	20.9	0.9	1	23	523	545	523	545	0.98
11	12	0.007	0.41	11.8	2.1	1	23	551	573	551	573	0.97
12	12	2.7e-05	0.0016	19.4	4.2	1	23	579	601	579	601	0.98

Sequence Information

Coding Sequence: ATGGACCTGTCCTCCGTGAAAAGTGAATCACCAGCAAAGTACCAGAGTTGCGCCAAGAAAGAAGGTGACCAAACGCATTTGGAAACAGAAATTGTTTCTTACCCAGATATAAAGGCTGAATCCCTGGACTATTACGGTTCTCTTGATCAAGGCGAAGGTAGCACTAATGTGGAGACTGTTCCCATCAAGGCAGAACCAGGCCCCCAAGAAGAAGATGCGGAGGGAATTCCTTATACAGAAATAGACATTGATCTGctggatgttaaaaaggaatgctcaGAGCACTCTGAAAGTATTACAATCACTACAGattCTAAGCCAACTAAAGACAAACCCAAAGAAGATCGTAAAGTCGCTAAAAGATCTGAGCCATGTAGTGTCAAAAGCTTCATGGAGAGAATCAACacagaatataaaaaagaatacaACAAAATTCCCGCTAAAGGTCAACGTTCAAGActcaaaaacaagaaaaataaagtgttttcttGTGATCAGTGTGGTTCcgcattttcttttaaaactgGTATAGACAGGCATATGCTCACGCACTccggagaaaaaccattttcatgtgaCCAGTGCAGTTCTGCTTTTACTCAAAAAAGCAGTTTGCAGAGGCACATGCTGTCTCATACTGGAGTGAAACCGTTCGCGTGTTACCTGTGCAGCTTCACGTGCTCCGTCAGCATCTCCCTAACGAGACACATCCTCACACACACcggagaaaaaccattctcgtgcCTGCTGTGTGACTACACGTGCTCGCAGAAGTATCGCCTCAAAAATCACATCCGCAGACATAATGAAAAATCCCAGAAATCCGACTTGGAAGCGCTTCGTACCGTAGATGTGAACTCATCTGCTCCGCAAACAGAGGTCGCTGGTACATATTCGGAAACAGAACATGCATCTTCCCCAGATATAAAGGTTGAATCCCTGGACCACTACGGTTCTCTTGATCAAAGCGAAGGTAGCATTAATGTGGAAACTGTTCCCATCAAGATAGAACCAGGACCCCGAGAAGAAGATGGAGTGGGAGTTCCTTATTCGGAAATAGACATAGACCACAGTATCAATACAGAATACAAGAAAACTGCCCCTAAAGATCAACGTGCAAAGCTCAAAGGCaagaaaactaaaatatttccctGTGATCAGTGCAACGCGGTTTTTCCCAAGAAAAACCAATTGGAAATACATCTAAATGTGCACACTGGTGAGAAACCCTTTTCTTGTTCCTATTGCAGCTCTGTTTTTAGCCAGAAGAGTAACTGGAAAACTCACATGCTGGTGCACGAAGGAGTAAAACCATTCGTTTGTCCTCACTGCAGCGCTGCTTTTACTAGGAAAATGTGCTTGAAGACGCACATTCTCTCACATACTGGGGAGAGACCTTTTGAATGCACACAGTGCAGTTCTGCATTTACACACGAAAGCACCTTAAAAACTCACATCTTGACGCATTATGGATTAAAACCGTTTTCATGTGATCAGTGTGGTTCCGCATTTTCTCGTAAAACAGGACTAGACAGGCATATGCTCACACACACCGGAGAAAAGCCATTTCCATGTGACCAGTGCAGTTCTGCTTTTACTAGGAAGAGCAGTTTGCAGACACATATGCTGTCCCATACTGGAGTCAAACCGTTTGCGTGTTACCTGTGCAGCTTCACGTGCTCGGTCAGCATCTCCCTAAAAAGACACATCCTTACACACAccggagaaaaaccattttcgtgcCCGCTGTGTGACTATAGATGTTCTCAGAAGTCTCGTCTAAAGAACCACATCCGCAGACATAATGAAAAATCCCAGAAAGCCGCATTGGAAGCTCTTCGTAGCGGAGATGTGAACACAACGGCTCCGCAAACAAGGTCGAGGGGTCTAAAACCCGGCGTGggcatataa
Protein Sequence: MDLSSVKSESPAKYQSCAKKEGDQTHLETEIVSYPDIKAESLDYYGSLDQGEGSTNVETVPIKAEPGPQEEDAEGIPYTEIDIDLLDVKKECSEHSESITITTDSKPTKDKPKEDRKVAKRSEPCSVKSFMERINTEYKKEYNKIPAKGQRSRLKNKKNKVFSCDQCGSAFSFKTGIDRHMLTHSGEKPFSCDQCSSAFTQKSSLQRHMLSHTGVKPFACYLCSFTCSVSISLTRHILTHTGEKPFSCLLCDYTCSQKYRLKNHIRRHNEKSQKSDLEALRTVDVNSSAPQTEVAGTYSETEHASSPDIKVESLDHYGSLDQSEGSINVETVPIKIEPGPREEDGVGVPYSEIDIDHSINTEYKKTAPKDQRAKLKGKKTKIFPCDQCNAVFPKKNQLEIHLNVHTGEKPFSCSYCSSVFSQKSNWKTHMLVHEGVKPFVCPHCSAAFTRKMCLKTHILSHTGERPFECTQCSSAFTHESTLKTHILTHYGLKPFSCDQCGSAFSRKTGLDRHMLTHTGEKPFPCDQCSSAFTRKSSLQTHMLSHTGVKPFACYLCSFTCSVSISLKRHILTHTGEKPFSCPLCDYRCSQKSRLKNHIRRHNEKSQKAALEALRSGDVNTTAPQTRSRGLKPGVGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -