Basic Information

Insect: Limnephilus auricula
Gene Symbol: -
Assembly: GCA_951813805.1
Location: OX638417.1:15452294-15487934[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.4e-06 0.00056 20.9 0.7 1 23 574 596 574 596 0.95

2 12 0.15 8.6 7.7 3.9 1 23 604 626 604 627 0.96

3 12 0.011 0.62 11.3 1.4 1 23 634 656 634 656 0.97

4 12 6.4e-07 3.8e-05 24.5 1.6 1 23 662 684 662 684 0.99

5 12 2.5e-05 0.0015 19.5 1.8 1 23 691 713 691 713 0.99

6 12 1e-05 0.00061 20.7 0.1 1 23 719 741 719 741 0.93

7 12 0.0002 0.012 16.7 0.5 1 23 747 769 747 769 0.98

8 12 3.1e-06 0.00018 22.4 1.0 1 23 775 798 775 798 0.96

9 12 4.9e-05 0.0029 18.6 2.8 1 23 804 827 804 827 0.96

10 12 1.4e-05 0.00084 20.3 2.5 1 23 833 855 833 855 0.99

11 12 5.2e-05 0.0031 18.5 0.8 1 23 861 883 861 883 0.97

12 12 0.00048 0.028 15.5 0.1 1 23 889 913 889 913 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.4e-06	0.00056	20.9	0.7	1	23	574	596	574	596	0.95
2	12	0.15	8.6	7.7	3.9	1	23	604	626	604	627	0.96
3	12	0.011	0.62	11.3	1.4	1	23	634	656	634	656	0.97
4	12	6.4e-07	3.8e-05	24.5	1.6	1	23	662	684	662	684	0.99
5	12	2.5e-05	0.0015	19.5	1.8	1	23	691	713	691	713	0.99
6	12	1e-05	0.00061	20.7	0.1	1	23	719	741	719	741	0.93
7	12	0.0002	0.012	16.7	0.5	1	23	747	769	747	769	0.98
8	12	3.1e-06	0.00018	22.4	1.0	1	23	775	798	775	798	0.96
9	12	4.9e-05	0.0029	18.6	2.8	1	23	804	827	804	827	0.96
10	12	1.4e-05	0.00084	20.3	2.5	1	23	833	855	833	855	0.99
11	12	5.2e-05	0.0031	18.5	0.8	1	23	861	883	861	883	0.97
12	12	0.00048	0.028	15.5	0.1	1	23	889	913	889	913	0.92

Sequence Information

Coding Sequence: ATGTCGGACCAGGATGCCAAGAACAATATTCATTGCTTCATATGCAACAGCAGAGCGGGAGTATCCATCAGAAATGCGGTACGGATCTTCAGTGACCTGAACAAGCTGCCCTCTTCGAGCAAAGCACTGCACGAGATCATATCGGAGATAGTCAGTAAGACGATCAATAAGGACATTCATTCACACATCATCTGCAAGAAGTGCTACCGACTCTTTCAGGAATATGACGAAGTGCAATTCAGGATGGAAGAAATTAAAACCGAGGTTCTCACCCAGTTCAAAAAGACGTTAACCAGTTACGATTCAGACTACGAATCCTTCTCATCCGGCACCCCCGTCAAAATCGAACCCTTCAAATTGTCGACTGCCAAAAACGACACCGACAAAAAGATCATCAATATATCGTCGAAGAATCTTATCAAGTCCCCTTTGCAAGCGCTGGCGCCGAACAATATCCCTAATCCGCCGGCCGGAGGTATCGTGGGACTGGATGACGGGAAGATTTCAAGTTCGATAAAGAAGATTCGTTCTCTGCCGCCGAATGTCGTTATTTTGAGTAGGCAGGGGAAGAAGATTGCGTTGCAAAAGCCGTTGAATAAACCACCGCCAGTTTTGTTGAAACTAAATAAAGAAGACAGCAGTATAACGAATTCATCGTTACTCGTAACCAAACCGAAGCTGGAAACCAGCGGAGAATCAATTGTACTGAAATCTAAACTGTTACTGGCCGTAAAGGAAGAAACCACACCCGCGGTAACGGACAATCTTCCAccgaaagaagaaaaaaaagtcgaTATTACAGAATTGCCTCCGCTACAGGAAACCGAACTGGACACGTCTCAGGACCTACAAACGGATCTGATTCATCAAACGGGTGAAGATAATATGCAGCAAGTTATTCAGTTGAGCGAAGACATGCAAATATCACAAGGAGACGAACAAAACAGCCAGGACGGCATACAAATTCAGTCGGAAGAATATCCGTTGGAGACGCTGGACTATAACGAGGATTCTAATGCGGAATTGGACCATGTTGAAGATGGAGACAGCGACAATTACGTGATCAGTCACATGGAGATTCTGGACGAGCACGATAGTTCCAGCATCGAGCTGGAGGAGGGAACTTTCCTCATGGAGCAAGCGGAGGACGGGAGCATCATCCGGGTGCTGCACCACCCCAGCACCTTGTACGGGAAGGACGATAGCGAGgagGGGATGAACGCAGATGCGGACCAACAGTCTGAAAGTGAAATGCAATATGAAGAAATTCATGATgATAGCACCACCATCAACCTGGACTCCATTGGCAATTTGGGCAAGAATAGCTTCATCCGCATCAAGAACAGTTCCACCATCGTCTCCGACAAGTCCACGGACAAAGGGGGAGCCTATTTCGTCAACGGAGACAGTCTTAACTTCGACcagATGGTGAAACCGGTTGGCGACAACACCTACCACTGCGTGCTGTGTGAGGTGATGAAGAAGAAGGGCAAGGAGAAGAAGTGCAAGGAGGAgcaggaaggggaaggagacgggggaAAAGACATGGACCTGTCGCTCTTGAAGAGTGAGGAAGAACTGGAAGAGGTGGTGAAGTTGGACCCTGACCAGGAGCAGCAGCAAGAGCAGGAGCAGGAAGGTGGAGCCGTGCTGGAGAGCTTCTTCGGCGTGAGCAAGGTGATGACGTACCATCTTCGCATCATCCACAACGTGCGGCTGCACATCTGCGAGGTCTGCGGGGAGATGTTCCGGCGGAGAGGAGAGTTCACCAGGCACATGGAGGAGCATGTGACCGGAGAGAGTGGCCAGTACAAGTGCACAGCGTGCGAGAAGGACTTTGACTCGGTGCGGTTGTACCACTCGCACATGAAAGCGCACCACTCGCAGCAGTTGAAGCAGCACGAGTGCAACGTCTGCGCCAGGAAGTTTGGATCACGGAAGCTTCTAGAAGAACACAATAACACCCACATTGGAGTCCGGCCTTACAGCTGTGAAATCTGCGGAAAGACATTCGCATCCAAATATACTTACCAGTCGCATCTCAAAACACACATGGATAGACCGCGTCCGTACACTTGTGCACAGTGCGGAAAATCTTTTTTCACCATGCAAAACCTAACGCAACACGAGAAAACTCACCTGGGCATCAAGGACTTTGTCTGCAATATATGCGGCAAGGCTTTTGGCACCCAACATAACCTAGAAGTGCACGGAGTGGTGCACACGGGATACAAACCCTTTGTCTGCAGAACTTGCAACAAGGCCTTCGCTAGACGAGCTGAAATAAGGGATCACGAACGCACTCACACAGGCGAACGTCCTTATTCGTGCGACATCTGCGGTTCCACCTTCTCCCAGCGCAGCAACCTGCAGTCGCACAAGAGGGCCACGCACTTTGACGACAAGCGATACAAGTGCCGCAACTGCGACAAGCGCTTCAAGCGGCGAAGACTTCTAGAATATCACATCAAAGCCTCCCACACGGGAGAGCGCCCCTACAAATGCAGCACCTGCGATGCCACCTTTGTTTATCCTGAGCACTTCAAGAAGCACCTCAGAATTCACAGCGGGGAGAAACCCTACAAGTGCGAGGTTTGTGACAAGGCGTTCAACTCGCGCGACAACAGGAACGCTCACCGCTTCATCCACTCGGACAAGAAGCCGTACGAGTGTCAGTACTGCGGCGCCGGTTTCATGCGTAAACCTCTGCTCTACGCGCACATGCAGTCCCAGGGTCACCTGAGCGACAAAATCGTAGTAAACCAGCCCAGATTGAATGGGGAATTTGACACCAGCAAACTGGAAGGATTGGGAAACACATTCATTCTGGAGGATGGCCAGGAAgtcattattaataatATAAAAGAGGAAGTGTTCTCGGAGGGTCACTCCCTGGTGTCCGATGTGACGCTGTCCGGGGGCGGCTCCCAGCACTCTCAGGAGCTGCGGGAGGAGCACCAGCACCTGGTGTTCCAGGAGGAGGAGGagggagacgaggaagaggagggGCACCCGCAGCAGAAGCTGTTTGTCCGGACGCACGTGAAGCACGGACATATCGTGGTGGAGGGAGCCGatGCGCTGGACGTGTCGGCTGCGCTGGACGATGAAGAGCCAGGAGAAGGGGAGGAAGAAGACAAGGAGCTGGACGAGGACAACACTTCTACAATGGACCTCATCGACTCCGACAGGATTCAGATCATCGGCTGCGAGGATGAAGTTCCTCACGAGATGGTTGAAGGCGCCGACAATGGCGTTCGATTCTTCCAGATCCGGATGCCCAACGGAGAGAAGGGTTGGGTGGCCCTCAACAGCTGCGAGGAGGCCACCTGA
Protein Sequence: MSDQDAKNNIHCFICNSRAGVSIRNAVRIFSDLNKLPSSSKALHEIISEIVSKTINKDIHSHIICKKCYRLFQEYDEVQFRMEEIKTEVLTQFKKTLTSYDSDYESFSSGTPVKIEPFKLSTAKNDTDKKIINISSKNLIKSPLQALAPNNIPNPPAGGIVGLDDGKISSSIKKIRSLPPNVVILSRQGKKIALQKPLNKPPPVLLKLNKEDSSITNSSLLVTKPKLETSGESIVLKSKLLLAVKEETTPAVTDNLPPKEEKKVDITELPPLQETELDTSQDLQTDLIHQTGEDNMQQVIQLSEDMQISQGDEQNSQDGIQIQSEEYPLETLDYNEDSNAELDHVEDGDSDNYVISHMEILDEHDSSSIELEEGTFLMEQAEDGSIIRVLHHPSTLYGKDDSEEGMNADADQQSESEMQYEEIHDDSTTINLDSIGNLGKNSFIRIKNSSTIVSDKSTDKGGAYFVNGDSLNFDQMVKPVGDNTYHCVLCEVMKKKGKEKKCKEEQEGEGDGGKDMDLSLLKSEEELEEVVKLDPDQEQQQEQEQEGGAVLESFFGVSKVMTYHLRIIHNVRLHICEVCGEMFRRRGEFTRHMEEHVTGESGQYKCTACEKDFDSVRLYHSHMKAHHSQQLKQHECNVCARKFGSRKLLEEHNNTHIGVRPYSCEICGKTFASKYTYQSHLKTHMDRPRPYTCAQCGKSFFTMQNLTQHEKTHLGIKDFVCNICGKAFGTQHNLEVHGVVHTGYKPFVCRTCNKAFARRAEIRDHERTHTGERPYSCDICGSTFSQRSNLQSHKRATHFDDKRYKCRNCDKRFKRRRLLEYHIKASHTGERPYKCSTCDATFVYPEHFKKHLRIHSGEKPYKCEVCDKAFNSRDNRNAHRFIHSDKKPYECQYCGAGFMRKPLLYAHMQSQGHLSDKIVVNQPRLNGEFDTSKLEGLGNTFILEDGQEVIINNIKEEVFSEGHSLVSDVTLSGGGSQHSQELREEHQHLVFQEEEEGDEEEEGHPQQKLFVRTHVKHGHIVVEGADALDVSAALDDEEPGEGEEEDKELDEDNTSTMDLIDSDRIQIIGCEDEVPHEMVEGADNGVRFFQIRMPNGEKGWVALNSCEEAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -