Laur025168.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638415.1:3670980-3720938[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.18 11 7.4 2.9 2 23 315 336 314 336 0.96 2 19 7.5e-05 0.0045 18.0 1.3 2 23 364 385 363 385 0.97 3 19 0.0012 0.07 14.2 0.6 1 23 391 414 391 414 0.96 4 19 0.0028 0.17 13.1 0.2 1 23 441 464 441 464 0.94 5 19 0.0046 0.27 12.4 7.1 2 23 475 496 475 496 0.98 6 19 0.0047 0.28 12.4 1.4 1 23 502 524 502 524 0.95 7 19 0.00027 0.016 16.3 2.3 3 23 532 552 531 552 0.97 8 19 3.5e-05 0.0021 19.1 0.9 1 21 558 578 558 582 0.89 9 19 4.4 2.6e+02 3.0 0.8 2 23 812 833 811 833 0.95 10 19 0.0073 0.43 11.8 1.2 1 23 894 916 894 916 0.98 11 19 0.0014 0.083 14.0 0.3 1 23 922 944 922 944 0.96 12 19 0.37 22 6.4 1.4 3 23 952 974 950 974 0.91 13 19 0.0075 0.44 11.7 0.2 1 23 980 1002 980 1002 0.97 14 19 5.1e-05 0.003 18.5 0.9 1 23 1008 1031 1008 1031 0.98 15 19 0.004 0.24 12.6 3.3 1 23 1041 1064 1041 1064 0.94 16 19 0.0062 0.36 12.0 2.4 3 23 1075 1095 1074 1095 0.99 17 19 9.3e-05 0.0055 17.7 2.1 1 23 1101 1123 1101 1123 0.98 18 19 9.3e-06 0.00055 20.9 2.9 1 23 1129 1151 1129 1151 0.97 19 19 0.00087 0.051 14.7 0.1 1 21 1157 1177 1157 1178 0.96
Sequence Information
- Coding Sequence
- ATGACGGATACTTGCCGACTGTGTCTCAGCATGACACGGGTCAATAATTGCATTTTCGGagatgacaataaaatatatttaaaaatcgttTCTTGCCTTCCAGTcaagGTCACAAAAGAGGACACCTTACCTAAGAAAATATGTGACGTGTGTTCGTGTAAAATAGATGATTTTTACCAATTCTGTCATAGAACTCTAGAAGCTGAAAATAGattaCTAGACCCTTCAAAACCCGACTCAGAATTAAACTCAAGTCTCGGTCTGAGCAACGACAtattaatctataaaaaaagCGAACCCTTCAAATTCTCGTCCAATTTCTCGCATATCAACGGCTATCACGGTCAGAATGACACATTCCACTCCCAAGGCGAACAACTATACAATTCCATTCAAAATAAGTTGAATCAACTAAAAAATTCAGTCACAGAAGGAACTCAAACGGACGAACCTATGAAATTATTACTGACGagtgatataaaaaaagaacaaattccGTTATCGCCGTACGGCAGTGACCACTGCAATGAAAACAATGAAGATTCATACTTTTACAACAGTGAACAGTTGCCGCCGAACGATCTGTTAACAATAAACGTCCCAAACAATGAACAAGATACCAGCTTTTTCTTCGACGAGACGAAAAAGAAACCTAAACGcgttaaaaaaaccaaaaaattaaaagagtTGAAgataaagattaagaaaaataaagcaAAGTTTTCCGTGCAGACAAATTACTTATCCGATTCAGATGATGAGGTGTCTTTGAAGAAGTTAAAGTCTAaacaaagtaaaaaaccttcgtCTAAATTGGAGGGTTTGGACGTTATTAAAGACGGTGAGATTTTGGACGAGAAAGACATCAAAAGGGAGGATTTGGGTCCAGACGCCTTATTGGAAACGGTTAAAGTAGAGTTTGACCCCGAGAAAGAGGAGTGGAATTGCTGTGTTTGTTTCATGAGatataatagtaaaaattcAATGCTGGCTCATTATAGAACGCACTACACAAGTCCCGACTCGTTTCATGAATCACTTTTAGAACTACAAAGCTTAGAAGATGAAGGAAGTGAAAGTAAAACTAGCACATGTCCGGTTTGTCAAAAAATTTACACGTCAAAAGCaacatttacaaaacatttacaaaagcACGGGAGTGACAAACCCTACAAATGTTCCTTGTGTGAGAAGACTTTCAAGAATCCActagaaatattaaaacatgGAAAGAAAGCCCACACATACGAGGATGAGTTGGATTATGGAGATGATGAAAAGAAGATAGACCAACGAGGACCAAGACCAACAACCAAGAGATTCATCTGCGATATGTGTGACGAGACCTTTGTATACATGAAATATCTGATGGTTCACCGCAACGCCGCCCACAAAGAGGCAGAGGGACGCCACCTGATCAACCGCTGCCTGCATTGCCGCCGCGAGTTCACGCATCTCAACTCGTTGCGCCGCCACCTTCGTTCGCACAGCGGCGAGCGTAACTTCCTCTGCTACGTGTGCGGAAAAGCACTGACCTCGCGCGAACACCTCAAGTTTCACATCAGGATACACACGGGCTTCAAACCAAACATCTGCAAgACTTGCGGTAAGGGCTTTGTGAAGAAATGCAACCTAACGTTGCACGAGCGTGTCCACAGCGGGGAGAAACCGCACGTTTGTTCACACTGCGGAAAGGCCTTCTCGCAGAGGTCTACGCTAGTCATACACGAGAGTATCAATGGACACCAAACTGTCTTGCAATCTCCTCAAAAAAGGCCTAAGATCGAATGGAGCTCTGGAATCAAAGACGAACCAAACGAATCAATAAATTCTCGGTCAAACGAAGAAAGCGTTATAGTTTTAAACAATAACCCCTCGTTAAAACAATCCTATACACATCCCAAACCAATCTACACCTCACAATGTACCCAGACAGAATTGGGTATGTCAGATATTCCGCAGGCCGTAGCGGAAATAGCCCACATACAATTAGATGAAAAATTCGATGACAAATTTGACGACAGTTTAAAAATCAAAGAAGAAACTGATTTAGAAGACTATGTCGATAATTTTGCCGATCAAGCCGATCAATACAGCTCAGACGACGATTTGACGCtgaacaaaataatcaaaacatcgccactaaaaatcaaaattaagaaAGAGTCGATAGAcgatgttgtatataaaaaaaagaaaaccaaaaagaaaaagaaagaaagCAAACGGGATAGAAAAGAAAACATCAAAGGAATCGTTGAAAAACGGAAGAGGGGACGTCCTAAAGGTTctacgaataaattaattaaaaagattgcTAAAGTAGTTGGCGGTTTGATTAAATTGGAAGGTGAAGAAAAGAGATTGAAGTTGGACTGTGATGGGGATAAGAGGTTCTATCCTGAGGGAACGGCGGAAGAAGAGAAAAAGTGGCAATGTTTAACATGCTTTTTGTACCTGAATTCGAGAACAGACCTACTGCAACATTATAAGGACCATGTGGAAAATCCCGCTTCGTTAATTCCAGTGgtgtcagaaaatggtgccaatgATTTGACACAGTCTGCTGATGTCAAATTAAAGGAAGAAGATGTCCCTAAGACTGATCTGCCCGTTGCCGCAAAGGATAAGACTgaagattatttaattattaatgctAACGGTAAAGAagaaaaagGCTACCAATGCACGCATTGTTCCAAGATATTGCCGAATAAAAGAGCCATCAGCAGACATCTCATATCCCACGATACTGCCAGACCTTTTTCTTGTAACCTTTGcgGTCGTTCCTACAAGAGGGCCTACGAGATACTGCTGCACGGGCGGGCCCACAACGGGGTGAAGACCCTGTTCTGTCGCTTCGAGGAGTGCAACTACAGCACCGTGTACAGAGGGGCCCTCATCTCTCACCACAAGCGACACGAGCCCGACTATAAATACATCTGTGACATCTGCAAGAAGGGATTTGACGTACTGACTTGGTTTAACGAACATAAGAACATCCATACCGGAGTCAAACCGTTCAGCTGTGATCTGTGCGGGAAGAACTTCGTGTATTCCAGATACCTGGCCTCTCATCGTAAGACCGTGCACCCGCAGACCTCTTTACAGCTGTGCAAGCACCGCTGCCCGCACTGCGCGATGACCTTCCCTCACCGCAAGACCCTGCGCGCGCACGCAGCCCGCGAACACAACGCTCGCAGCGAGGGAGCCCAGGTGCTCTGCGACATCTGCGGGAAGGAGCTCAGTTCCAGGGAGCATCTCAAGTTTCATAGGAGGACACACACTGGAGAGAAGCCTTACGTTTGCAGAACTTGCGGCAAAGGATTTGTGAAGAAATGCAACCTCACCTTACACGAACGAGTTCACAGCGGGGAGAGGCCACATGTCTGCTCGCATTGCGGGAAGGCCTTCTCACAGCGATCAACACTAGTTATACACGAAAGGTACCACTCGGGCTCCCGACCCTACCAGTGCCCCATCTGCCACAAAGGGTTTGTGGCCAAAGGACTGCTCTCCATGCACCTCAAGGGATGTCTGTGA
- Protein Sequence
- MTDTCRLCLSMTRVNNCIFGDDNKIYLKIVSCLPVKVTKEDTLPKKICDVCSCKIDDFYQFCHRTLEAENRLLDPSKPDSELNSSLGLSNDILIYKKSEPFKFSSNFSHINGYHGQNDTFHSQGEQLYNSIQNKLNQLKNSVTEGTQTDEPMKLLLTSDIKKEQIPLSPYGSDHCNENNEDSYFYNSEQLPPNDLLTINVPNNEQDTSFFFDETKKKPKRVKKTKKLKELKIKIKKNKAKFSVQTNYLSDSDDEVSLKKLKSKQSKKPSSKLEGLDVIKDGEILDEKDIKREDLGPDALLETVKVEFDPEKEEWNCCVCFMRYNSKNSMLAHYRTHYTSPDSFHESLLELQSLEDEGSESKTSTCPVCQKIYTSKATFTKHLQKHGSDKPYKCSLCEKTFKNPLEILKHGKKAHTYEDELDYGDDEKKIDQRGPRPTTKRFICDMCDETFVYMKYLMVHRNAAHKEAEGRHLINRCLHCRREFTHLNSLRRHLRSHSGERNFLCYVCGKALTSREHLKFHIRIHTGFKPNICKTCGKGFVKKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVIHESINGHQTVLQSPQKRPKIEWSSGIKDEPNESINSRSNEESVIVLNNNPSLKQSYTHPKPIYTSQCTQTELGMSDIPQAVAEIAHIQLDEKFDDKFDDSLKIKEETDLEDYVDNFADQADQYSSDDDLTLNKIIKTSPLKIKIKKESIDDVVYKKKKTKKKKKESKRDRKENIKGIVEKRKRGRPKGSTNKLIKKIAKVVGGLIKLEGEEKRLKLDCDGDKRFYPEGTAEEEKKWQCLTCFLYLNSRTDLLQHYKDHVENPASLIPVVSENGANDLTQSADVKLKEEDVPKTDLPVAAKDKTEDYLIINANGKEEKGYQCTHCSKILPNKRAISRHLISHDTARPFSCNLCGRSYKRAYEILLHGRAHNGVKTLFCRFEECNYSTVYRGALISHHKRHEPDYKYICDICKKGFDVLTWFNEHKNIHTGVKPFSCDLCGKNFVYSRYLASHRKTVHPQTSLQLCKHRCPHCAMTFPHRKTLRAHAAREHNARSEGAQVLCDICGKELSSREHLKFHRRTHTGEKPYVCRTCGKGFVKKCNLTLHERVHSGERPHVCSHCGKAFSQRSTLVIHERYHSGSRPYQCPICHKGFVAKGLLSMHLKGCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -