Laur024613.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638414.1:9329895-9345319[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3e-05 0.0018 19.3 0.5 1 23 99 121 99 121 0.95 2 13 0.00019 0.011 16.7 6.4 3 23 164 184 162 184 0.96 3 13 2e-07 1.2e-05 26.1 1.1 1 23 192 214 192 214 0.96 4 13 0.037 2.2 9.5 0.5 1 23 220 243 220 243 0.95 5 13 0.045 2.6 9.3 0.2 2 23 249 270 248 270 0.89 6 13 1.7e-05 0.00099 20.1 1.6 1 23 276 298 276 298 0.96 7 13 1.9e-06 0.00011 23.0 2.4 1 23 304 326 304 326 0.98 8 13 0.00083 0.049 14.7 0.2 1 23 332 354 332 354 0.97 9 13 0.027 1.6 10.0 0.1 1 23 360 382 360 382 0.92 10 13 0.0078 0.46 11.7 0.1 2 20 388 406 387 409 0.91 11 13 1.6e-06 9.4e-05 23.3 1.3 1 23 415 437 415 437 0.97 12 13 8.1e-05 0.0048 17.9 2.6 1 23 443 465 443 465 0.98 13 13 2.2e-05 0.0013 19.7 0.9 1 23 471 493 471 493 0.98
Sequence Information
- Coding Sequence
- ATGGAGCCTGACTGGAATAATGAAAACTCGGATTTCTCTAACCAGGATGAAATACCGCTTCAGAGGATAGCGTACGACACAAACGGAGAGGCCGTCCTGCCTGGTGATAGTAAAAAGGACTTTATTTGGATACCCGTCATAAAGCAGGAATTTCTTGATGTACCCAACCCCTTGATGGAGGATAttaaagaggaagttGAAACTGAGGACAGTGATGAGGATTTAGTCAACTTGAATGACCCTTCATTATCCGATGACGATATTGCATTGAATGAGCTCTTCAAAAAGAAGGTCTTCATTTGCTCGGAATGCGGCGAGACTTTCAGCAAAGCGCTTCATCTAAAAAGGCACGGCGCCGTCCACAAAACGAAAGAAACCAAAAGAATGAAAGAGAAGCGACGgcgaaaaaaggaaaaaaaagaagaaattttaaagaGAAAACACATCTTGAACAGAATGAAACtactgaaaaaagaaaaaatcatcaattgCAATGTTTGTAACAAAACCTTTAGCCACCACAAACTGTTGAAAAAGCATTACTATACGCATCAAATAGACGATACGTCTAGATACATCTGCGAAGATTGCGGTAAGAGATTCCGTCGACAAGACACTTTAACGAAACACCGCGAACTCCACAACACGGATCAAACCTACCAATGCATCGTCTGCACGGAGATTTTCAAACGGAAAGGCAAACGAAGCGAACACATGCGCGCGGAACACACCGATGCGACTCTAACGTGCAGAGAATGCGGGAAAGTATACAATGGGTTAATACCGCTAAAGAAACACTTTGTCTTGCATACTAATATAATACCGCACGCTTGCGACATCTGCGAGCGCACATTCAAACGCGCCGATTACTTAAAAGAGCATAAACTAACGCACGAACCCGATCGCTCGTACACGTGCGAGGCTTGcggtaaaaaattcaaaagccGAAGCAATCTCCGTTCACATAAACAATCGCATATCGAAGAACGTCCGTTTGCTTGCGATCTGTGTGCGAGTGTGTTCAGGAGATCTCAAGCGCTACGAATACACATGCAATTACACAAAGGTTGCATACAATACACGTGCTTGCAGTGTGGCAAGGCTTTCGCCGAAGACATCATATTAAAACGACATCTTTTACTGCATAATAGTTCCGTTACACCTTGTTTGATGTGCGATAATGTGTTTGCGGACGAAACGCAGCTAAGACAACATATGCCGGTACATATTATCGTGAAACCGTTCCCGTGCAATCTTTGCGACAAGTCTTTCACGTCCAAAACTACACTTAGTCGACACACTCTGGTTCACACCGATTCTAAAAAGTATCCCTGTCATTTGTGTGAGGCTGCATTTAGGCGGAAAGAGCATTGGCAGTCGCACGTTAGAAGGCATATGAACGACAGGCCGTATTCTTGCGACGAGTGTGGAAAAGGGTTCACGATGGACTATTTACtgagaaaacataaaaagattCACACGAGAATAGCATTAGAGAATGAATTACTgatgaaaagtaaagaaaatgaagatattggAGGTTTAACTATAGAAAAAGTTCCCAATGAGGAGAGCGCCTGTCCCTCTCCTGACAGGGGGCTCCAGGGGCTCCAGGGCCGGGCGGGCCCCGCCGAGGGGGACACCTGCTGTCCATCTCTAGTCTGCTGGGTCTTCACCTGA
- Protein Sequence
- MEPDWNNENSDFSNQDEIPLQRIAYDTNGEAVLPGDSKKDFIWIPVIKQEFLDVPNPLMEDIKEEVETEDSDEDLVNLNDPSLSDDDIALNELFKKKVFICSECGETFSKALHLKRHGAVHKTKETKRMKEKRRRKKEKKEEILKRKHILNRMKLLKKEKIINCNVCNKTFSHHKLLKKHYYTHQIDDTSRYICEDCGKRFRRQDTLTKHRELHNTDQTYQCIVCTEIFKRKGKRSEHMRAEHTDATLTCRECGKVYNGLIPLKKHFVLHTNIIPHACDICERTFKRADYLKEHKLTHEPDRSYTCEACGKKFKSRSNLRSHKQSHIEERPFACDLCASVFRRSQALRIHMQLHKGCIQYTCLQCGKAFAEDIILKRHLLLHNSSVTPCLMCDNVFADETQLRQHMPVHIIVKPFPCNLCDKSFTSKTTLSRHTLVHTDSKKYPCHLCEAAFRRKEHWQSHVRRHMNDRPYSCDECGKGFTMDYLLRKHKKIHTRIALENELLMKSKENEDIGGLTIEKVPNEESACPSPDRGLQGLQGRAGPAEGDTCCPSLVCWVFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -