Basic Information

Insect: Limnephilus auricula
Gene Symbol: Znf296
Assembly: GCA_951813805.1
Location: OX638391.1:34186040-34212712[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0011 0.067 14.3 0.2 2 23 168 190 167 190 0.91

2 12 0.00071 0.042 14.9 1.0 1 23 214 237 214 237 0.94

3 12 0.00078 0.046 14.8 4.3 1 23 394 416 394 416 0.97

4 12 0.0014 0.085 14.0 0.6 1 22 422 443 422 443 0.95

5 12 7.6e-05 0.0045 18.0 0.9 1 23 452 475 452 475 0.97

6 12 0.00026 0.015 16.3 2.2 1 23 496 518 496 518 0.97

7 12 8.2e-08 4.8e-06 27.3 1.6 1 23 525 547 525 547 0.98

8 12 1.6e-07 9.7e-06 26.4 2.0 3 23 560 580 558 580 0.96

9 12 2.6e-05 0.0015 19.5 2.5 1 23 586 608 586 608 0.99

10 12 1.4e-06 8.3e-05 23.5 2.2 3 23 616 636 614 636 0.97

11 12 2.8e-06 0.00016 22.5 1.7 1 23 642 664 642 664 0.99

12 12 0.018 1.1 10.5 0.0 1 23 670 694 670 694 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0011	0.067	14.3	0.2	2	23	168	190	167	190	0.91
2	12	0.00071	0.042	14.9	1.0	1	23	214	237	214	237	0.94
3	12	0.00078	0.046	14.8	4.3	1	23	394	416	394	416	0.97
4	12	0.0014	0.085	14.0	0.6	1	22	422	443	422	443	0.95
5	12	7.6e-05	0.0045	18.0	0.9	1	23	452	475	452	475	0.97
6	12	0.00026	0.015	16.3	2.2	1	23	496	518	496	518	0.97
7	12	8.2e-08	4.8e-06	27.3	1.6	1	23	525	547	525	547	0.98
8	12	1.6e-07	9.7e-06	26.4	2.0	3	23	560	580	558	580	0.96
9	12	2.6e-05	0.0015	19.5	2.5	1	23	586	608	586	608	0.99
10	12	1.4e-06	8.3e-05	23.5	2.2	3	23	616	636	614	636	0.97
11	12	2.8e-06	0.00016	22.5	1.7	1	23	642	664	642	664	0.99
12	12	0.018	1.1	10.5	0.0	1	23	670	694	670	694	0.92

Sequence Information

Coding Sequence: ATGGCGGAGGGCCAGGATACGCCTGGCAGTGAAATTAATTTGGATAAGACTTGTCGGACTTGTTTGGAAGAGTCCGACAGTCTTAAATCCATATTTTTAAGTGATGAGAATTTCGGCGCGACCACGATAAGCGCACTTGTAACTTCGTGTACACAGCTCAAGatAGCGCAGGGAGATGGATTGCCCATTCATATATGTTTTCCGTGCATGGACAGCGTACAGGCGGCTTTTACTTTCAAACAACGAGCCGAACGAGCAGACGCCAAGTTGAGGGACTACATAATTAGGAATCATCCTGATTTACTGGCATCACCGTGCACCATCATCGATAACCACATCAAAAGAGAGGACAGTCAAGAAGGTAATGATGTCAAAGTAAAAGATGAATTATTAAAGAATGGAGATTTCCCCAATAATTATTTACCTGTGGTAGATTTTGAATCATTTCCTGACCATTCTGATGATTCTGAAGATGACAGCAGACCTCTCAaagGGTATGTTCAATGTGAAATTTGCTACCGGGCATTCACAACTACATCTTACTTGGACCGTCACAAGATAGCAGCACATTCTAAAATTCCCCCAAAGAGTCTGGAAAAGAAAACTAATTCTAGTTTGGAGAAAAAATCCGATGCGAACTTTGTGTGTAAATTCTGCGCCTACACGTTCAAGCGAGAAGACCAGCTAATATCCCACTTGACTCTGTCGCATAATGAAAAGTGTGGCCCCAAGAAACGTGGACGGCCATCTAAAAAAGATATTATAGCTAAAAAACTGCGGCTGAAAGGAATATTAGACACTATGAAGATCAAAACTGAGGACAATGATGTGGAAAGCAATTCAACTGAACCAGAGTCTACGTCTGCCAATGATAACTCAATAGTGAATCTACTGTCCTCCAGCCCAGTTGTAGAAATTGAGGTGGTTGTCATCAAAAGTGAGGACATTACAGATGAGGTTTTGTCAGATATAATGATAGAAGATATACGGGAAGGGAGAGTGGAGAGGTACATCAATGAACCTAAAGTAGAAGCACTGGATCCTGACTGCGATTCAAATGGAGGTGATGCAGGTGATGATAACGATATCGGCGATGATAGTGAATCTGAAGAGAAACTGagCAAAATCGTAGGCAAAACTAAGCGAGGAGCAAACCAGAAGACCAGGAAATATCGCCTGCACAAGTGTTCGTTGTGCGACCAAACATTTACAAGAACAAATCATATTATACGACACATGTCAGCACATAATTATGATTTCCCATTTAAATGCGATAAATGCACAAAGgtTTTCCcgaataatgaaattttaatgaagCATAAACGCATGCAGTGTGAAAATCTCACAAAACCATTCCAATGTGGCACTTGTGGGCTTAAATTTACTTATGAAATGTCTTTGAACAAACACATCCTAAGAAACCACAAAGGGGAATCTGTGTCGGTTAATTTTATAGATCCGTCTTaccagaaaaaagaaaagaccTTCATCTGTCCGAACTGCAACAAAGGATTCTACAAGCAAGAACATCTAGACAAACATTCCAAAATACACATGCCAAATGAGAAGAAATTTGAATGTCCGATATGCCAAAAGAAATTCAACCGGAAAGACAATTTAAGATCTCACACTAGAGTCCACGAACCCAACAAGGAAGAGCTGGACTCCAACTGCCTCTGTGTATACTGCGGCCGCTCCTTCTCCAACTCCTCCAACCTCATAGTCCACATGCGCAGACACACCGGCGAGAAGCCATACAAATGTGACATATGCGAAAAAGGTTTCCCCCGCTCCTCTGACCTGCAATGTCACAGACGGACCCATACAGGAGAGAAACCTTGTTTGTGTACCATTTGCGGAAAAGGATTCTCGCGCTCCAACAAGCTGGTGAGGCACATGCGCATCCACACCGGCCAGCGACCGTACAAATGCACTTTCTGCGATCGTGCCTTCACGCAGTCCAATGACTTGACCCTGCATGTCCGACGGCACACGGGTGACAAGCCTTACGTCTGCGGCGTGTGCGGAGACCGCTTTATTCAGGGCACGGCGCTGCAGGCACATAGGAGAATACAGGGCCATTATGAGCAGGTGAACCAGCCTACTCCGTTTGCTGCGAACTCGGTCAACAATCCCAGTCGGGATAATGGGCCCCACAGGGTGGCAAGAGTGGGAACGTTTAAGACGCAGGGAAACGCCTCTGCGAATACGACCAGCGCCCCGGCAACGCTCGCCTCCTCCGTGGTCACCACTTCCAGCGGCAGCACAACGACGTCACGCGCACAGAGCAAGAGCGTGCCCAACTACATACCCAATGGCGTCACCCCcttcctccccaccccctctgGCCTCATGCAGAACCTGGACGTCACTAATGCGCTCTTCTCGATGTCTCAATACAATAATCCAGGATATAATTAG
Protein Sequence: MAEGQDTPGSEINLDKTCRTCLEESDSLKSIFLSDENFGATTISALVTSCTQLKIAQGDGLPIHICFPCMDSVQAAFTFKQRAERADAKLRDYIIRNHPDLLASPCTIIDNHIKREDSQEGNDVKVKDELLKNGDFPNNYLPVVDFESFPDHSDDSEDDSRPLKGYVQCEICYRAFTTTSYLDRHKIAAHSKIPPKSLEKKTNSSLEKKSDANFVCKFCAYTFKREDQLISHLTLSHNEKCGPKKRGRPSKKDIIAKKLRLKGILDTMKIKTEDNDVESNSTEPESTSANDNSIVNLLSSSPVVEIEVVVIKSEDITDEVLSDIMIEDIREGRVERYINEPKVEALDPDCDSNGGDAGDDNDIGDDSESEEKLSKIVGKTKRGANQKTRKYRLHKCSLCDQTFTRTNHIIRHMSAHNYDFPFKCDKCTKVFPNNEILMKHKRMQCENLTKPFQCGTCGLKFTYEMSLNKHILRNHKGESVSVNFIDPSYQKKEKTFICPNCNKGFYKQEHLDKHSKIHMPNEKKFECPICQKKFNRKDNLRSHTRVHEPNKEELDSNCLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDICEKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGQRPYKCTFCDRAFTQSNDLTLHVRRHTGDKPYVCGVCGDRFIQGTALQAHRRIQGHYEQVNQPTPFAANSVNNPSRDNGPHRVARVGTFKTQGNASANTTSAPATLASSVVTTSSGSTTTSRAQSKSVPNYIPNGVTPFLPTPSGLMQNLDVTNALFSMSQYNNPGYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -