Laur022317.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638411.1:15328158-15329966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0021 0.12 13.5 0.2 1 23 40 62 40 62 0.98 2 13 3.3e-07 2e-05 25.4 2.4 1 23 68 90 68 90 0.98 3 13 0.00033 0.019 16.0 0.7 1 23 96 118 96 118 0.98 4 13 2e-06 0.00012 23.0 3.8 1 23 124 147 124 147 0.95 5 13 0.00026 0.015 16.3 0.4 2 23 182 203 181 203 0.96 6 13 4.9e-05 0.0029 18.6 3.4 1 23 367 390 367 390 0.97 7 13 2.2e-05 0.0013 19.7 0.8 1 23 395 417 395 417 0.98 8 13 4.7e-06 0.00028 21.8 3.5 1 23 423 445 423 445 0.96 9 13 0.00022 0.013 16.5 1.7 3 23 453 474 451 474 0.94 10 13 2.4e-06 0.00014 22.7 0.2 1 23 491 513 491 513 0.98 11 13 0.0001 0.0061 17.6 1.5 3 23 521 541 519 541 0.98 12 13 0.0028 0.17 13.1 3.1 3 23 549 569 547 569 0.97 13 13 0.00042 0.025 15.7 4.1 1 21 575 595 575 596 0.93
Sequence Information
- Coding Sequence
- ATGTCACATCAAAACAATAAACTGACCGTTGCCGGAGAGCGCCCAAGCAAGAGAATAAAAAGGAGTAGTTTAGTGAAACGAAAGAGATATCCCCCTGCTGATGGTATTGTAAATCGGTTTACTTGTGAAAGTTGTTCTAAGATCTTCCCAAATATGACTGCGTTAATCATTCACAACAGAGTTCACAcaggagagaaaccattctcttGTGAAGTATGCAAAAAGAAGTTTTCACAGAATATTCAATTACGAAGTCACATGAGAACTCACACTGGTGAAAAGCCTTACTCATGTAAAGTTTGTTCTAAAAAATTTGGCCAAAAGATTGCCCTCATAAGTCACTCCAGACTTCACACGGGGGACAAACCCTTTCTGTGTGAATACTGCTCAAAAGCCTTTAGGCACCAAAGTAACTTACTGAGACACAAGAGGACACTTCACCCGGAGCTATATCTCGCATCTTTAAAAGAGAGCAAAGAAACGCCAtctgaaaagaaaatattagatattGTGAAGTCAGCGGGTACAATTGTTGAGGTTCTTAGTTGTAAAGATTGCACAAAAACGtttgctttgaaatttgatttggAAAGTCATGCTATGgtgcataatgtaaaaaaagctcCTCCTTATAAAGAATCTACCGAAGTTCCAAATTGCATAACTGAAAGTATTTCATCTGGTGACGGTCACTTCGCTAACATAAAGAATGAACAAGAGTCGCAAGATTTCAGGAAAGTAGTTCCTAAAACAGATTACTTTTctttaaatgataaaaactcaaaaaatatCGATATCGCAATAAAAAGTTCTTGTATGAAAACAAACAATATCGTTGATGCAATCAGCGATTCATCTACGGACTTCTTCACGTAcgatatttcttttaaaaaagagGAAGAACCTGAAAGTTTAGAAGTCGCACCAACCACGCATGAAATGAGTTATACTAAAACTAGTATTTTCAAAGCTGATGAAGAATTAAAGAAACCTCCTGTCGAAAAAAGTGATAAAGTCTACCAAAAGGTTGATCAACTTTTTGATGTTCCAGTGAAATGTGAAATAAACCTAACGAGTTCCTTAACAGATGAGAAACCATTTCCTTGTTTGAACTGTTCAAAAACATTCAAAAGTAAACGTCAACTATTGAGACACACTAAAAGAAGTCATGGCGTAAGGAAATTTGTATGTGAAGTGTGTAAAAAGATGTACAGTGAGAAAAACGTGCTGGAAAAACATATGAGAAGCCACACGGGTGAGAAACCCTACCTTTGTGAGAAGTGCTCCAGATCATTCTCACAGCTCAGCCATTTGCAGCGGCACGTCAAAATGCACAACGGCGTCAAATCATACGGTTGCCAGATATGCAGTAAAAAGTTCTCACAAAATATCCATCTCTCAACACACATGACTTTGATTCACCCAGACGCGGAGATTCCTAAAAAAGTTAGACGCAAGATATATTTGCGTTACCCTTGCAAGGATTGCCCTAAGAAGTTTCCGTCTAATGCCAGTTTAGTTATTCACACGAGATCTCATACTGGTGAGAAACCATTTGGTTGTGAGTTATGCAATAAAAGATATTCGCAGAAGATTCATCTTTTGGGTCATATGCGTGTTCATACAGGGGAGAAGCCTTTCGGTTGTAAAGTATGTGGTAAAACTTTTCGGTACAAGCTGGACTTGACTTGTCATACTAGGATTCATACCGGGGAACAGCCGTTCATATGTGAGTATTGTTCAAAGGCGTTTAGGCATCAGTGTAACTTGCTGAGACATAAGACAACGCGCGTATGTCGAAAAGAATAG
- Protein Sequence
- MSHQNNKLTVAGERPSKRIKRSSLVKRKRYPPADGIVNRFTCESCSKIFPNMTALIIHNRVHTGEKPFSCEVCKKKFSQNIQLRSHMRTHTGEKPYSCKVCSKKFGQKIALISHSRLHTGDKPFLCEYCSKAFRHQSNLLRHKRTLHPELYLASLKESKETPSEKKILDIVKSAGTIVEVLSCKDCTKTFALKFDLESHAMVHNVKKAPPYKESTEVPNCITESISSGDGHFANIKNEQESQDFRKVVPKTDYFSLNDKNSKNIDIAIKSSCMKTNNIVDAISDSSTDFFTYDISFKKEEEPESLEVAPTTHEMSYTKTSIFKADEELKKPPVEKSDKVYQKVDQLFDVPVKCEINLTSSLTDEKPFPCLNCSKTFKSKRQLLRHTKRSHGVRKFVCEVCKKMYSEKNVLEKHMRSHTGEKPYLCEKCSRSFSQLSHLQRHVKMHNGVKSYGCQICSKKFSQNIHLSTHMTLIHPDAEIPKKVRRKIYLRYPCKDCPKKFPSNASLVIHTRSHTGEKPFGCELCNKRYSQKIHLLGHMRVHTGEKPFGCKVCGKTFRYKLDLTCHTRIHTGEQPFICEYCSKAFRHQCNLLRHKTTRVCRKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -