Basic Information

Insect: Limnephilus auricula
Gene Symbol: -
Assembly: GCA_951813805.1
Location: OX638405.1:8198295-8209356[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.1e-06 6.3e-05 23.8 2.9 1 23 163 185 163 185 0.99

2 13 0.00066 0.039 15.0 1.4 1 23 193 215 193 215 0.97

3 13 0.0001 0.006 17.6 0.4 1 23 222 244 222 244 0.97

4 13 7.5e-06 0.00044 21.2 1.4 1 23 264 286 264 286 0.98

5 13 5e-06 0.00029 21.7 1.2 1 23 295 317 295 317 0.98

6 13 2.3e-06 0.00014 22.8 2.6 1 23 323 345 323 345 0.98

7 13 3.7e-06 0.00022 22.1 2.5 2 23 352 373 352 373 0.97

8 13 1.8e-06 0.00011 23.1 0.8 1 23 379 401 379 401 0.96

9 13 0.0085 0.5 11.6 4.5 1 23 407 429 407 429 0.93

10 13 6.7e-05 0.004 18.2 1.3 1 23 435 457 435 457 0.98

11 13 0.012 0.7 11.1 7.7 1 23 463 485 463 485 0.98

12 13 3.9e-07 2.3e-05 25.2 1.9 1 23 491 513 491 513 0.99

13 13 0.0024 0.14 13.3 0.5 1 20 519 538 519 541 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.1e-06	6.3e-05	23.8	2.9	1	23	163	185	163	185	0.99
2	13	0.00066	0.039	15.0	1.4	1	23	193	215	193	215	0.97
3	13	0.0001	0.006	17.6	0.4	1	23	222	244	222	244	0.97
4	13	7.5e-06	0.00044	21.2	1.4	1	23	264	286	264	286	0.98
5	13	5e-06	0.00029	21.7	1.2	1	23	295	317	295	317	0.98
6	13	2.3e-06	0.00014	22.8	2.6	1	23	323	345	323	345	0.98
7	13	3.7e-06	0.00022	22.1	2.5	2	23	352	373	352	373	0.97
8	13	1.8e-06	0.00011	23.1	0.8	1	23	379	401	379	401	0.96
9	13	0.0085	0.5	11.6	4.5	1	23	407	429	407	429	0.93
10	13	6.7e-05	0.004	18.2	1.3	1	23	435	457	435	457	0.98
11	13	0.012	0.7	11.1	7.7	1	23	463	485	463	485	0.98
12	13	3.9e-07	2.3e-05	25.2	1.9	1	23	491	513	491	513	0.99
13	13	0.0024	0.14	13.3	0.5	1	20	519	538	519	541	0.94

Sequence Information

Coding Sequence: ATGTCCAACATCGATCAGCTCTGCCGATCTTGTATGAAGGATGATCCTGTTATGGTAGATTTGTTTAATAACATGGATGACTCCTTGCCTCTCAAGACAACTCTCACTCTGGCAGACATTTATATGATTTGCACCCCTGTTCAGGTTGGGAAGGAGGACGGAATGCCGCAAAAGTTATGTGAAAGTTGTATTGAAAGTTTAACATCGGCTTACGCTTTCCGGACTCAGTCGGAGAGGAACGATACAATTCTCCGTGACTTGGCGCGATCCTCAGAGTTTGAGGCggaagtgaaaaaaatacaaattaaagaaGAGGTGGAAACAGATGCCCCTCTAAAGGTGAAGCAAGAGAATAACGAACATGAACCACAggaagaggaagaagaggaagacgATAATGTGGAGGACACATACGCGGACGAACCATACTCACCCGAGCCAAtgatcaaaaagaaaaaaaaaaaactccgcaGTAAAAGTGGCCCTTACACCTGCAGCGAGTGCAACAAGACTTTCTACAAACAGTCCCGCCTCGAGAAGCACATGAAGGTACACCTCAAAGTGAAGAAGGAGTCTCACAAGTGCGAAGTCTGCAAGAAAACATTCCTAAAGATCTCCGGTCTCAATCGACACATGGCCATACACGACGCAGAGAGTAAACCCTTTGAGTGCCCCGAGTGCTTCCAGAGGTTCAAGCGCGAGGGGCTGCTGCTGCGGCACAAGGCGGTGCATTCCACGGGCCTGGAGAACCAGCCCGAGACGAGGGAGCCCGGAGAGACCCCTGCCACATACCCCTGCGAGGACTGCAGTATGACCTTCGAGTCGCGCCACTCGCTGTCCAGCCACATGCGCATCCACAAGGAGAAGGAGAAGCAGAAGAACTTCTCGTGCGAGGTGTGCGATAAGAAGTTCTCGTCTAAGAACCCGCTGAACCGGCACCTGAAGCTGCACCTGGAGGACAAGCCGCACCGCTGCACCATTTGCGACAAGCGCTACTCGCGCCAAGACCAGTTGCTGGACCACATCAACAAGCACAATGGCGTCAAGCCCAACGTCTGCCCCTTCTGCAGCAAAGCCTTCTCCCAGCTGTGTAACCTGAAGGACCACATGAGGACACACACGGGCGAGACTCCGTACCTCTGCTCGCAGTGCGGCAAGGGTTTCAACAACGGCTCCAACCTGCGCCAGCACATGATGCGCCACACGGGCCTCAAGCCCTACTCCTGCCACCTTTGCCCCAAGAGGTTCTCAACTAAAGGCCAGATGACGTGCCACGTAGGCACGCACTCAGGAGCGCACCCGTATGTATGCGACTCGTGTGGGCACGCCTTCACCAAACCCAACTCCCTCAAGaaacacaaactcatccatctCGGAGTCAAACCACACGAATGCGATGTGTGCAGCATGAGATTCTCATGCAAGGACCATCTTAAACGGCACTACCGCATCCATACGGGCGAGAAGCCATACAAGTGCACGTACTGCGATCGGGCCTTCACACAGAGCAACGACCTCGTCAAGCACACGCGTTCGCACATCGGGGACAACATCTACAAATGCACGGTGTGTTTGGAGAGCTTCCGTCTCCTCAGCGAGCTGAAGAACCACTACCCCATCCACTACAACAAGGACAATCCCGAGGAGCGCGCCGCCTTCGAGGGCGCCCAGGCTGCCTATGAGAAGACCCACGCAGACTTCCACAAGTCCACCAAGGCCTTCGACAAGACCCAGTCCGATTCCTCCTCGTCCCTCGGCATGTCCGAGGACTCCAAAACCCTCATCTCCTTCGACAAGCATTTAGACAAGACGGTCATATCGCAGATAGTCCTGTCGGGAGACACGTTAGATGATAATTACCAAAATCTAGAGACTAAGAACGAACCAAAAGAAGCGCTTAGCGAAGACTTGCGCTCGCCCGATGTTCAGATCTATGTCATCGACCCCCCATTCCCAAACACATCACTTACTAAAAATATGTAA
Protein Sequence: MSNIDQLCRSCMKDDPVMVDLFNNMDDSLPLKTTLTLADIYMICTPVQVGKEDGMPQKLCESCIESLTSAYAFRTQSERNDTILRDLARSSEFEAEVKKIQIKEEVETDAPLKVKQENNEHEPQEEEEEEDDNVEDTYADEPYSPEPMIKKKKKKLRSKSGPYTCSECNKTFYKQSRLEKHMKVHLKVKKESHKCEVCKKTFLKISGLNRHMAIHDAESKPFECPECFQRFKREGLLLRHKAVHSTGLENQPETREPGETPATYPCEDCSMTFESRHSLSSHMRIHKEKEKQKNFSCEVCDKKFSSKNPLNRHLKLHLEDKPHRCTICDKRYSRQDQLLDHINKHNGVKPNVCPFCSKAFSQLCNLKDHMRTHTGETPYLCSQCGKGFNNGSNLRQHMMRHTGLKPYSCHLCPKRFSTKGQMTCHVGTHSGAHPYVCDSCGHAFTKPNSLKKHKLIHLGVKPHECDVCSMRFSCKDHLKRHYRIHTGEKPYKCTYCDRAFTQSNDLVKHTRSHIGDNIYKCTVCLESFRLLSELKNHYPIHYNKDNPEERAAFEGAQAAYEKTHADFHKSTKAFDKTQSDSSSSLGMSEDSKTLISFDKHLDKTVISQIVLSGDTLDDNYQNLETKNEPKEALSEDLRSPDVQIYVIDPPFPNTSLTKNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -