Laur017533.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- ZFY_1
- Assembly
- GCA_951813805.1
- Location
- OX638404.1:32751355-32754358[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0012 0.074 14.2 1.8 1 23 143 165 143 165 0.96 2 17 2.9e-05 0.0017 19.3 0.5 1 23 170 193 170 193 0.96 3 17 0.041 2.4 9.4 0.6 1 23 239 261 239 261 0.98 4 17 2.1e-05 0.0012 19.7 0.5 1 23 267 290 267 290 0.97 5 17 0.00018 0.011 16.8 0.6 1 23 296 318 296 318 0.97 6 17 8.6e-07 5.1e-05 24.1 1.9 1 23 324 346 324 346 0.98 7 17 0.77 46 5.4 7.0 1 23 352 374 352 374 0.98 8 17 0.00019 0.011 16.7 7.8 1 23 380 402 380 402 0.98 9 17 0.0029 0.17 13.0 0.8 1 23 569 591 569 591 0.95 10 17 5.6e-06 0.00033 21.6 1.4 1 23 596 619 596 619 0.98 11 17 0.00083 0.049 14.7 0.6 1 23 673 695 673 695 0.98 12 17 2.8e-05 0.0017 19.3 2.0 1 23 701 724 701 724 0.97 13 17 2.6e-05 0.0016 19.4 0.8 1 23 730 752 730 752 0.98 14 17 1.9e-05 0.0011 19.9 2.7 1 23 758 780 758 780 0.97 15 17 0.00065 0.039 15.1 1.1 1 23 786 808 786 808 0.98 16 17 2.5e-05 0.0015 19.5 4.5 1 23 814 836 814 836 0.98 17 17 7.2e-06 0.00042 21.2 4.2 1 23 842 865 842 865 0.97
Sequence Information
- Coding Sequence
- ATGCGGTGTAATAGAGCAATTTGTTGCAGGTACAGCCTCTCATTGCGCTCAGAGCGCCGAGTTCGTGGGGCCGCTACCCACCGCACCCACCCCTCTCCCCACTGCGCTGATGATAAACTTGAACCTGATTCCAGTGTTCAGGCACAGCACTCTACTTCCGCCCCTTACTTGCTTCCCGCCCAAGCCTTTAACTTCTCCAATACCGACGATGATGACTGCTTGTCCGACTCTCTACCCGATGAGACCCAAGAGAAATCCGACATTCAGCACTTCCAAAATCAATATTCCTCGCTGCAACAAGTCATTGCCAAACTTCAGGAACATGTCTCCAACTGTCATAAACGATCTGAAAAAAGAACCGGATACGATCCTCAAACTATAGAAGTCCTTCAAAACGTTAAAGTTATCATTCAAGGAAAAATTCATTATCGATGTAAAACTTGTAATAAATCTTTTCCGTacccaaataaatttttaacgcATAGTGAAATACATTCTGAGAAGCTGTTTGCGTGTGAGATTTGCGGCCGTAAGTTTAGACTGGCAGAATATTTACAAAGGCACTTGGAAAAGTTCCACGGTGAGGAAGATAAAAGCGAAAATAAGGCCGATCCTGCTGGAATGaataatttcaaagttaaaaaggAAGGTAGGAAATATTTCGATTATAATGCAATGGAGAAGGCTAAAGTCTTCATAGACGGAGAAATGTATTATCAATGCAGCGTGTGCAATATCAAACTGGCAAGAGTCACTTACTACTTGGACCACATGACCAAACATACCGGGGAGAAACGCTACATTTGTGACGTCTGCGGTCGGAGATTCCGTTTAAACTCAATGCTGAGGACGCACGTCAAAGTGACGCATGAAATGATCAAAAGGTTTGCGTGCAATAAATGTGACAAGAAGTTTGCGGCAAAGAACACGCTGCTAGAACACCTGCGCTTGCACTCGGGGGAGAAACCTTTTGTCTGCCTCGAATGCGGGAAGAGGTTCACGCAGCGGCCCGCCCTCTATCACCACATGCGCACCCACACAAACTACTTCCCCTTCCAGTGCGAGCAATGCAGCTCCAAGTTCCGTTGCCAGTCCAAGTTCAAGTACCACATGATGAGCCACACGGGTGCCACGCCCTTCACGTGCCACATCTGCAACAAGGGCTTCCCCGTCAAATGCTATCTGCGGCGTCACATGCACACACACTCGGACGTGCGACCCCACACCTGCCCCAAGTGCAGCAAGTACAGCCTCTCATTTCGCTCATTCAACCGAACTCTAAGGGACACCGAGGTGCCCCCGTCTCCCCTTGCCGCTGACCGCCATTACACGGATGTTAAAGTTGAACCGGAATCTCTTGCCCTGTCTTGCCGTGGTGCCCCGGCTTTCCCCAATCATAACTATTTCATAGACGACGCCCTGTTCCCCTCTCAGGCCTTTTACCATGATGGTGAAGACGTTATATCTAACCATCCAGTTATCCAGTCCGAGAATCCAGAACCCGACAAACCTGAATCTACGCACTTGAAAAGACAATACATGTCTTTAAAGAGTATTGTAGCCAAATTGCAAGAACACGTATCCaaatgccacaaatatacttccAAGctatggaaaaacaaaaagagaaTGCCTCGTATCTATGACGCTCCAACCACGCAGGAGCTGGAGAAGGTCAGAGTCACGGTGGACGGAAAGGTACAGTACCAGTGCCCCATCTGCGACAGATTCTTTCCTCGAACCAACCGCTACTTGATACACAAGACAGTGCACTCTTCCAAGCTCTACCCTTGCGAGATCTGCGGCCGCAAGTTCAGGGTGCATGGCTACTTGAAGAACCACCTCCGAAAGATCCATTCCTTAAGAAACAGCCAAGACGTGGTGGAATACCAACGCTCGCATCCCAAATCCGAACTGGTCACCAACAAACCGACGGACCAACCCAAAACGGGACGCAAGTACTTTGACTACAAAGCAATCGATAAGGTAAAAGTGATCATCAACGGGGAAGTATTTTATCAGTGCAAAATATGCGACATGAAACTATCTAGAGTCAGTTATTATCTGAATCACATTTCCGTGCATACTGGAGAAAAAAGATTTGTCTGTCATCTGTGTGGGAGGCGCTTCCGTCTTAATACCATGTTGCGTGTACATCTACGCGTCACACATGAGAACATCAAGAACTTCAGCTGTGACATTTGTCAGCAGAAGTTTGGCACCAAGAACAACCTGATTGAACACAGGCGGATTCACTCGGGAGAGCGGCCGCACATCTGCGCCAAGTGCGGCAAGCGCTTTAAACAGAAGTCGGCCTTGTACATTCACAACAGAACGCACACAGACCACTTCCCCTTCAAGTGCGTGCAGTGCGAGGCCAAGTTCAGGATCCAGTCACAGCTCAACTATCACATGATCAAGCACACGGGCGAGAAGCCGTACTCATGCGACGTGTGCGGGCGAGCCTTCCCGCTCAAGTGTCATCTCAACCACCATATGCGCATCCACACAGAGGTGCGTCCATACCCGTGCACGCTCTGCGGCAAGGCCTTCCGCCACACCAGCAACCTCAAGGTGCACCTCAAGAACTGTCACAAGATGGACTATTCACCTctgattatataa
- Protein Sequence
- MRCNRAICCRYSLSLRSERRVRGAATHRTHPSPHCADDKLEPDSSVQAQHSTSAPYLLPAQAFNFSNTDDDDCLSDSLPDETQEKSDIQHFQNQYSSLQQVIAKLQEHVSNCHKRSEKRTGYDPQTIEVLQNVKVIIQGKIHYRCKTCNKSFPYPNKFLTHSEIHSEKLFACEICGRKFRLAEYLQRHLEKFHGEEDKSENKADPAGMNNFKVKKEGRKYFDYNAMEKAKVFIDGEMYYQCSVCNIKLARVTYYLDHMTKHTGEKRYICDVCGRRFRLNSMLRTHVKVTHEMIKRFACNKCDKKFAAKNTLLEHLRLHSGEKPFVCLECGKRFTQRPALYHHMRTHTNYFPFQCEQCSSKFRCQSKFKYHMMSHTGATPFTCHICNKGFPVKCYLRRHMHTHSDVRPHTCPKCSKYSLSFRSFNRTLRDTEVPPSPLAADRHYTDVKVEPESLALSCRGAPAFPNHNYFIDDALFPSQAFYHDGEDVISNHPVIQSENPEPDKPESTHLKRQYMSLKSIVAKLQEHVSKCHKYTSKLWKNKKRMPRIYDAPTTQELEKVRVTVDGKVQYQCPICDRFFPRTNRYLIHKTVHSSKLYPCEICGRKFRVHGYLKNHLRKIHSLRNSQDVVEYQRSHPKSELVTNKPTDQPKTGRKYFDYKAIDKVKVIINGEVFYQCKICDMKLSRVSYYLNHISVHTGEKRFVCHLCGRRFRLNTMLRVHLRVTHENIKNFSCDICQQKFGTKNNLIEHRRIHSGERPHICAKCGKRFKQKSALYIHNRTHTDHFPFKCVQCEAKFRIQSQLNYHMIKHTGEKPYSCDVCGRAFPLKCHLNHHMRIHTEVRPYPCTLCGKAFRHTSNLKVHLKNCHKMDYSPLII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -