Laur025796.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638416.1:5924581-5928369[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.012 0.7 11.1 0.4 2 23 91 112 90 112 0.96 2 21 9.8e-06 0.00058 20.8 2.6 1 23 118 140 118 140 0.98 3 21 0.0028 0.16 13.1 4.4 2 23 147 168 146 169 0.94 4 21 0.00095 0.056 14.5 0.2 1 23 174 197 174 197 0.98 5 21 1.3e-05 0.00078 20.4 7.3 1 23 209 232 209 232 0.96 6 21 0.00027 0.016 16.3 2.5 1 23 238 261 238 261 0.95 7 21 0.051 3 9.1 4.7 1 23 296 318 296 318 0.98 8 21 3.2e-07 1.9e-05 25.5 2.1 1 23 324 346 324 346 0.98 9 21 0.011 0.64 11.2 0.8 1 23 352 374 352 374 0.93 10 21 0.00019 0.011 16.7 2.4 1 23 380 403 380 403 0.94 11 21 0.0051 0.3 12.3 0.1 1 23 437 459 437 459 0.93 12 21 0.0015 0.087 13.9 0.7 2 23 646 667 645 667 0.96 13 21 0.006 0.35 12.0 0.8 1 23 673 695 673 695 0.98 14 21 1.7e-05 0.00099 20.1 1.4 1 23 701 723 701 723 0.96 15 21 4.3e-06 0.00025 21.9 3.9 1 23 728 750 728 750 0.98 16 21 0.006 0.35 12.0 8.7 1 23 759 782 759 782 0.96 17 21 0.0044 0.26 12.5 0.3 1 23 788 811 788 811 0.89 18 21 0.012 0.7 11.1 1.0 3 23 838 858 836 858 0.98 19 21 4.6e-07 2.7e-05 25.0 0.5 1 23 864 886 864 886 0.98 20 21 3e-05 0.0018 19.3 3.7 1 23 892 914 892 914 0.99 21 21 5.9e-05 0.0035 18.3 0.3 1 21 920 940 920 941 0.95
Sequence Information
- Coding Sequence
- ATGAAGGACGTTCTGCAAGATCTTCCTAGGATGGAACATATTAAAGTGGAACAACAGGAGGCGGGAAAGTTCCACAATTCTTTGAAAAGTGGAAGAACCAGGTCTTCAGTAGCAAGGAAAGTTAACACTGAAAATATCCTGCCTGCTGcTAAAAAAATCAAGATAAAAATCGAAAGCTCCGAAAGTTCTTCTTCGGACGAAGAGAGTTCCAGGTCCCTGGATTTAGGAGAAGCTTCAACTTCTAGTGGCAAATCTGGAAAGCTCAACTTAACTTGTTTAGAATGTTCTAAAACATTCCCTAATAAATTAAGTATCGAAATGCACCTAAAGCTTCATAAACGAGATAAGAAATACGACTGTAAAGTTTGCGGCGAAATGTTCAGCCTAAGAACAAGTCTCCACCGCCACATGAAAACTCACTTAACAGAGGGCGATGTTTACTGCGAATTTTGCTCCAAATCATTTGATAAAAACTACAAGTTGCTTCAGCACAAAAGGCGACACCACGAAGAGAAGAAATATTCTTGCGAGATATGCAGTAGGATGTACAGCGAAAAGGGTATTCTTGCAAGACATATGAGAGTGTCTCACACAGCCCGACTTAATGTTAAAAAGGAAAAGATCTTTCATTGTAAAGAATGCTCGAAATCGTTTTCGCAACGCTCGCATTTAAACCGACACACTAAAATTACGCACAGGGGCGAAAAATGCTTTCTTTGTGAATATTGCTCAAAAACCTTCGCGGAGAAGTGTAATTTATCCATGCATATGATGAGGATACACAGCGATAAGAATCCAAGTCAAATTAATTATGGTAGAACAGCGGAACAGCATGATAAATCTAATCTTGGACCAACAGGTGTTAAGCGATTAATAGAAAGGCGCTTTGTTTGCCAATTCTGTTACAAGAGGTTTGTCTGTAAGAATAGTTTGGAAATCCACACAAGAACACACACTGGCGAGAAGCCCTTTTCGTGTGAAGTTTGCGGCAAGAGTTTTAGACAGAAGAGTCAATTTCAAATTCACAGTCGTACTCATACTGGCGAAAAACCTTTCAGCTGTCCAATTTGCTTCAAAAGATTTAACACGAGCACCGAGTCAAACGGCCACATGGTCAGTCACACCAAAGAGAAAGCCTTCTTGTGTGAATACTGCTCTAAAGCATTTGGAACGCAAGGCAACTTGCACAAACACAAGAAAATCTATCACAAAGATAAATATCTCGCAGCAAAAGAAGCGATGGAACAAAAACGACTTGAATTAATCTTTTTGCGTAGTCAAGAAAACATCGTTAAATCTGCAGAAGTGTTTTCTTGTATAGATTGTTCCAAAGTATTTAGCCAGCAGATTGATTTGGTTAGTCACGCAGAGGTCCATATAAGAAGCAAAGCGCATTTATTAAATGATATACTTGTTTCGGGGCACACAACAAACGATGAGTCGACTatgaaagcggaaatatttgatGCGCTTACAGAAAAAAGAGAGGAACACGCCTCTACCAACCACTTCGACGATTTGATTCCAATTATAAAGAAGGAAGAAATCCCAGAAAATGCCTTACCATATAACCCAATGAACGCAAACGAAGGCAATACTTTCGATGACGTGGATATGAAAAACGACGATGATTCAGATGAAGAAATACAACTACCCACACCCCCACCATCGCGATCGTCTAAAAAACGAAATTCTGTCACGAAATCTGAAGATGGTAGAGATTACATCGCAATCAGcgtttctacaataaaaaaagaatcCTCTAAAAGTAAAAACAATGTAAAGGAAAACAGTACCCCCATGCTTGATGGTTATGATGAGAAAATGAAGAAGGAAAAACATCGGACTCCTTCAACCGCAATGAGCAGCGACTCGTGCGGAACTGCAAAAGAAATCTCGCCCTCGTGTTCGGATACATTCGATTTCTCTGAATTATCTTGCACAGAATGTTTAAAAACCTTCACAACTCGGATGGCCTTCGTGTCGCATGTAAAGATCCACGCTAAGGGTAAAATATACGATTGCAAAGTGTGCAAAGTAACATATACAATCAAAAGCGCGTTCGACCTGCACATGAAAAGTCACGTCGACAAAGGCTGTTTCGCCTGTGACCAATGTCCGAAAACATTCGACAGGCAAACATACTTAACAAGACACGAAAAGAACCACGGAGAGAAGAATTTTGTTTGCGACAAATGTCCCAAAACTTTCTGCGAGaataatctattaaaaaaacacatgaaAACTCATATCGCGgttaaaaaagagaaaacattTCATTGTAAAGAATGTACGAAATCATTCATACAACACTGCCATTTGGTACGTCACGTTAAAATTATCCACAAAAACGAAAAACACTTTCTCTGTGAATACTGctcaaaaacatttttcgatGTTACTTCTCTATCCATCCACATGGTGGGTGTTCATAAAGATATTTCTATCCCCGCAAGCGAGGAGAttaaaaaggtaacaaaaaGGAAGATATTGAACAAGGATCGGTTTGGCTGTAGCGAGTGTTTTAAAAGATTCCCGACGAGAACTATTTTAGCAAATCACACCAGGACGCACACTGGCGAAAAACCGTTTTCTTGCGAAGTGTGCGGTAAAAGGTTCACGCAGAAAGGTCAATTGTTGGTTCACACCAGGATTCACACAGGGGAGAAGAAATATAGCTGCCATGTTTGCTTTAAAAGGTTCAAAACGAACGCCGAGTTGGAGAGCCACTCCCGGACGCATACTGGCGAGAAACCCTTTGTATGTGAGTATTGCTCACGCGCGTTCCCCAAGCCCTCCAACCTTCTGCGGCATAAGAAGAATAGGGTTTGTAGGAAAAcgtag
- Protein Sequence
- MKDVLQDLPRMEHIKVEQQEAGKFHNSLKSGRTRSSVARKVNTENILPAAKKIKIKIESSESSSSDEESSRSLDLGEASTSSGKSGKLNLTCLECSKTFPNKLSIEMHLKLHKRDKKYDCKVCGEMFSLRTSLHRHMKTHLTEGDVYCEFCSKSFDKNYKLLQHKRRHHEEKKYSCEICSRMYSEKGILARHMRVSHTARLNVKKEKIFHCKECSKSFSQRSHLNRHTKITHRGEKCFLCEYCSKTFAEKCNLSMHMMRIHSDKNPSQINYGRTAEQHDKSNLGPTGVKRLIERRFVCQFCYKRFVCKNSLEIHTRTHTGEKPFSCEVCGKSFRQKSQFQIHSRTHTGEKPFSCPICFKRFNTSTESNGHMVSHTKEKAFLCEYCSKAFGTQGNLHKHKKIYHKDKYLAAKEAMEQKRLELIFLRSQENIVKSAEVFSCIDCSKVFSQQIDLVSHAEVHIRSKAHLLNDILVSGHTTNDESTMKAEIFDALTEKREEHASTNHFDDLIPIIKKEEIPENALPYNPMNANEGNTFDDVDMKNDDDSDEEIQLPTPPPSRSSKKRNSVTKSEDGRDYIAISVSTIKKESSKSKNNVKENSTPMLDGYDEKMKKEKHRTPSTAMSSDSCGTAKEISPSCSDTFDFSELSCTECLKTFTTRMAFVSHVKIHAKGKIYDCKVCKVTYTIKSAFDLHMKSHVDKGCFACDQCPKTFDRQTYLTRHEKNHGEKNFVCDKCPKTFCENNLLKKHMKTHIAVKKEKTFHCKECTKSFIQHCHLVRHVKIIHKNEKHFLCEYCSKTFFDVTSLSIHMVGVHKDISIPASEEIKKVTKRKILNKDRFGCSECFKRFPTRTILANHTRTHTGEKPFSCEVCGKRFTQKGQLLVHTRIHTGEKKYSCHVCFKRFKTNAELESHSRTHTGEKPFVCEYCSRAFPKPSNLLRHKKNRVCRKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -