Laur025818.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- -
- Assembly
- GCA_951813805.1
- Location
- OX638416.1:6629884-6635577[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.04 2.4 9.4 1.2 2 23 34 55 33 55 0.96 2 21 0.00042 0.025 15.7 1.3 1 23 61 83 61 83 0.98 3 21 0.0023 0.14 13.3 3.6 3 23 91 112 90 112 0.96 4 21 0.029 1.7 9.9 0.1 1 23 117 140 117 140 0.95 5 21 1.1e-06 6.3e-05 23.8 2.7 1 23 149 172 149 172 0.96 6 21 5.2e-05 0.0031 18.5 3.7 3 23 180 201 178 201 0.95 7 21 1.3e-05 0.00079 20.4 1.1 1 23 219 241 219 241 0.98 8 21 2e-06 0.00012 23.0 3.0 1 23 247 269 247 269 0.97 9 21 0.0016 0.092 13.9 7.4 1 23 275 297 275 297 0.97 10 21 0.00072 0.043 14.9 1.5 1 23 303 326 303 326 0.94 11 21 0.0003 0.018 16.1 2.1 1 23 354 376 354 376 0.96 12 21 0.00044 0.026 15.6 1.9 2 23 574 595 573 595 0.96 13 21 0.019 1.1 10.4 1.3 1 23 601 623 601 623 0.97 14 21 9.5e-06 0.00056 20.8 1.8 1 23 629 651 629 651 0.97 15 21 2.7e-07 1.6e-05 25.7 2.0 1 23 656 678 656 678 0.98 16 21 4.9e-05 0.0029 18.6 5.1 1 23 687 710 687 710 0.96 17 21 0.014 0.81 10.9 0.3 1 23 716 739 716 739 0.94 18 21 0.0003 0.017 16.1 1.5 1 23 764 786 764 786 0.99 19 21 1.3e-05 0.00076 20.4 1.4 1 23 792 814 792 814 0.98 20 21 8.6e-06 0.00051 21.0 0.7 1 23 820 842 820 842 0.99 21 21 2.6e-05 0.0016 19.4 0.5 1 21 848 868 848 869 0.94
Sequence Information
- Coding Sequence
- ATGaagatcaaatcaaaaaaacgACGCAAATCAGAGAGTGGGAGCAAAAGATCCAAGTCTTTAAAAGAGGAATTATCTTCCAGAGAAGTCAATGAACTGACATGTCCTGATTGCTTTAAAATCCTCAGCTGTAAGACCAGTTTGGTAGCTCATATGAAACTGCACAACAGGGACAAGAAATACGACTGTAAAATATGCAATACAACTTACAGTCTGAAAACGAGTCTAGACCTCCATATGAAAAGCCATTCGGAGGATGGAAGCGTGGCCTGTGAACTCTGCTTCAAAACTTTCGATAGGAATCACAAATTATTGAAACATAGGAGACTGTATCACGAGGAAAAGAAATTTGCTTGTGAAATATGTAACAGGCTTTACAGTGAGAAGGGGATTCTTGCAAAGCATATGAGGGCATCTCATACTGACGTGAAGAAGGaaaagATTTACCAATGCAAAGAGTGTTCAAAAGCATTCTCGCAACAAGGCCACCTGACCCGCCACGTAAAACTGACGCACAGAGGCGAGAGGTCCCATCTCTGCGAATATTGCTCCAAAACATTTGCTCAGCAATGCAATTTGACCATACACATGCTCAGAATCCACAGCGACAAGACTTCTGGAGAAAAATACGTCAAGAAGCAAGTGGAGCGACGCTTTGTTTGCAAGTACTGCTCAAAAAAGTTTCCTACCATGGACAGTTTGGTAATCCATACCCGGACTCATAcaggagagaaaccattcttcTGTGAAGTCTGCGGTAAAAGGTTTACCCAAAAAGCTCATCTACTTCTCCATACACGAACCCACAGCGGGGAAAAACCGTTCTGTTGTCAGATTTGCTTCAAAAGATTCAGCACGAAACACGAACTGATTACTCATAATAGAAGCCACACAGGAGAGAAACCCTTTTTGTGTGAATACTGCTCCAAATCATTTGGATTACAAACCAACTTGCTCAAACATAAAAAGATCTACCACACTGAAAAATACCTCGCAGCGAAAGAGGAGACTAAAAAACGAAACGCTCAGGTTTGCCAAGAAATCATCGTTAAGCCTGTTTTTTCTTGTACAGATTGTACCAAGACATTCACTCAAGAATGTGATTTAGTGAGCCACGCAAAAGCTCACGAAGTTATTAAAGCATTTATCGCGGCGGAGAATCTTAAGAAATTACTGAAGAAACAGAAAGCTACTCCGAGTAATAGGAAAACTGTTGTGGATGGGTCTGCTTTGAAAACTGAAGTGATTGATGCTGTTGTTGAGGCTAGGTCTACGCCCTCGAATAAAGATTTGGATCCTGAAGTTAAGAAAGAGATTCTTGAGAATTCTGAAATATTGCAGGACGCGTTTGACTATCCTTGTGACGATCTTCCCAGTGGGCCCAACAGTCCTTTCGATGCCGTGGAGCTGAAAAAAAGCGAAAGTGAATCCGATGAGGACTCTCAACCTCTAGCAAAAGTTTGTAAATCCTCTGGCATACGAAACTCTGTTAAGAACGAAGAAACTAACATTTCTGCTAATTGTTTAACAATGAGCGTGCCTGGAATCAAAGAGGAAGAAACTAAATTAACTCCAGCTGATAATTTATCAAGTGACGTCGgtCTTGACAGCAAGGTCAAAGTTGAAACCCAGCCAAGTTATTCCACCGAACTTGAAAGCGATAATGTTAAGGCTGTGGATGACGCCTCAACATCGTGGAATCTTGACTCGTCCGATCTAACTTGTAAAGAATGTTATAAAACTTTCACAATGCGAAAATCCTTCATAGCGCACTTGAAATTGCACTCAAAGGGCAAAACTTACATTTGCAAAGTTTGCAAAACAACTTACAGCCTTAAAAGCGCTTTAGACTTCCACATGAAGAGTCACGTGGACGAAGGGTGTTTTGCCTGCGAGCACTGCCCTAAAACTTTTGATAAGAAAATCAACTTGGCAAGGCATGAAAAAACCCACGGAGATAAAAAATTCTCTTGCGACAAGTGTGGAAAGTCGTTCAGCGAAAACAATCTCTTAAAAAAACACTTGAGGACTCATCTCAACTTGAAAAGGGAAAAAACCTTCCATTGTGAAGAGTGTCCCAAATCATTTACCCAAAACTGTCACCTTGTTCGCCATGTGAAGATCGTCCACAAAGGCGAGAAGTCATTCCTGTGTGAATACTGCTCTAAAGCATTCTTTGAGATCACGCTTCTATCTTTGCACATGATGAGCGCGCATAAAGATAAGAATCTCTTAGCGAATGAGGAATTTAAGAAGTTTACTGAGAGGATCAATATGAACAAGAGCCGCTACTCTTGTAAGGATTGCTTCAGAAAGTTCGCTACTGTAAATAAGCTTGCGATCCACACTCGTACCCACACCGGTGAAAAGCCGTTTTCGTGTGATGTCTGTGATAAAAAGTTTGCGCAGATTTCTCACTTGCGAATTCACTCTCGGATCCATACAGGGATCAAACCCTATTCCTGTGAAGTCTGCTTCAAGAGTTTCAGCCAGAAACCCTCGTTGGTCAGTCATGCTAGAACTCATACAGGGGAGAAACCATTCGTGTGTGAGTATTGCTCCCGAGCTTTTCCCAAACCTTCCAACTTAATGCGGCACAAGAAGAAACGAGTTTGTCGGAAagcgtag
- Protein Sequence
- MKIKSKKRRKSESGSKRSKSLKEELSSREVNELTCPDCFKILSCKTSLVAHMKLHNRDKKYDCKICNTTYSLKTSLDLHMKSHSEDGSVACELCFKTFDRNHKLLKHRRLYHEEKKFACEICNRLYSEKGILAKHMRASHTDVKKEKIYQCKECSKAFSQQGHLTRHVKLTHRGERSHLCEYCSKTFAQQCNLTIHMLRIHSDKTSGEKYVKKQVERRFVCKYCSKKFPTMDSLVIHTRTHTGEKPFFCEVCGKRFTQKAHLLLHTRTHSGEKPFCCQICFKRFSTKHELITHNRSHTGEKPFLCEYCSKSFGLQTNLLKHKKIYHTEKYLAAKEETKKRNAQVCQEIIVKPVFSCTDCTKTFTQECDLVSHAKAHEVIKAFIAAENLKKLLKKQKATPSNRKTVVDGSALKTEVIDAVVEARSTPSNKDLDPEVKKEILENSEILQDAFDYPCDDLPSGPNSPFDAVELKKSESESDEDSQPLAKVCKSSGIRNSVKNEETNISANCLTMSVPGIKEEETKLTPADNLSSDVGLDSKVKVETQPSYSTELESDNVKAVDDASTSWNLDSSDLTCKECYKTFTMRKSFIAHLKLHSKGKTYICKVCKTTYSLKSALDFHMKSHVDEGCFACEHCPKTFDKKINLARHEKTHGDKKFSCDKCGKSFSENNLLKKHLRTHLNLKREKTFHCEECPKSFTQNCHLVRHVKIVHKGEKSFLCEYCSKAFFEITLLSLHMMSAHKDKNLLANEEFKKFTERINMNKSRYSCKDCFRKFATVNKLAIHTRTHTGEKPFSCDVCDKKFAQISHLRIHSRIHTGIKPYSCEVCFKSFSQKPSLVSHARTHTGEKPFVCEYCSRAFPKPSNLMRHKKKRVCRKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -